Propagation of TyrR regulog to Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601
| Source regulog: | TyrR - Enterobacteriales |
| Regulator type: | Transcription factor |
| Regulator family: | TyrR |
| Regulation mode: | activator (repressor) |
| Biological process: | Aromatic amino acid metabolism |
| Effector: | Tyrosine; Phenylalanine |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601 |
| Orthologous TF(s) | SSPA3576, SSPA1116 |
| Regulated genes | 8 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -111
Score: 5.2 Sequence: TTGTAAATAAATCAATACAA
Locus tag: SSPA0150
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| SSPA0150 | -111 | 5.2 | TTGTAAATAAATCAATACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aroP | ||||
| Ortholog function: Aromatic amino acid transport protein AroP | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0112 | -89 | 5 | ATGTAAACAAATTAATACAA |
| Salmonella typhimurium LT2 | STM0150 | -108 | 5.2 | TTGTAAATAAATCAATACAA |
| Citrobacter koseri ATCC BAA-895 | CKO_03262 | -87 | 5 | GcGTAAAcaTAttaaTACAa |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00116 | -192 | 4.8 | CCGTAAACAAAACAATACAG |
| Enterobacter sp. 638 | Ent638_0658 | -87 | 4.4 | CCGTAACGAAATAAATACAT |
| -64 | 4.5 | ATGGAATTTCATAATTACAC | ||
| Erwinia amylovora ATCC 49946 | EAM_0745 | -187 | 4.4 | GCGTAAAGTTTCCAATACAC |
| Yersinia pestis KIM | y0765 | -234 | 5.3 | GTGTAATTAAATGATTACAT |
| Serratia proteamaculans 568 | Spro_4013 | -80 | 4.4 | CCGTAAATAAAACAAAACAC |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3791 | -93 | 5.4 | CCGTAAAAATAAAATTACAC |
| Edwardsiella tarda EIB202 | ETAE_0657 | -91 | 5.4 | ATGTAAAAATAAAATTACGA |
|
Position: -100
Score: 4.5 Sequence: CTGTAAACATTGTTTTCCAG
Locus tag: SSPA0422
|
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| SSPA0422 | -100 | 4.5 | CTGTAAACATTGTTTTCCAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ipdC | ||||
| Ortholog function: Indole-3-pyruvate decarboxylase (EC 4.1.1.74) | ||||
| Salmonella typhimurium LT2 | STM2405 | -100 | 4.5 | CTGTAAACATTGTTTTCCAG |
| Citrobacter koseri ATCC BAA-895 | CKO_00409 | -101 | 3.8 | CTGTAAATCCTGCTTTCCAC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02740 | -97 | 5 | GCGTAATTATTGCTTTACAC |
|
Position: -89
Score: 4.2 Sequence: CTGTCAATATTTGTTGACAG
Locus tag: SSPA1116
|
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| SSPA1116 | -89 | 4.2 | CTGTCAATATTTGTTGACAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: tyrR | ||||
| Ortholog function: Transcriptional regulator of aromatic amino acid biosynthesis | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1323 | -89 | 3.7 | GTGTCAATGATTGTTGACAG |
| Salmonella typhimurium LT2 | STM1683 | -89 | 4.2 | CTGTCAATATTTGTTGACAG |
| Citrobacter koseri ATCC BAA-895 | CKO_01393 | -90 | 4.2 | CTGTCAATAATTGTTGACAG |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01305 | -90 | 4.2 | CTGTCAATAATTGTTGACAG |
| Enterobacter sp. 638 | Ent638_2152 | -86 | 3.7 | CTGTCAATATCTGTTGACAG |
| Erwinia amylovora ATCC 49946 | EAM_1834 | -96 | 3.9 | CTGTCAACTTTTCATGACAG |
| Serratia proteamaculans 568 | Spro_2617 | -98 | 3.6 | CTGTCAACTTTTGCTGACAG |
| Proteus mirabilis HI4320 | PMI1369 | -96 | 3.7 | GTGTCAACTTTTGCTGACAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2580 | -178 | 3.7 | TTTTATAATCAATCTTACAA |
|
Position: -77
Score: 5.4 Sequence: CTGTAAAGTTTTATTTACGG
Locus tag: SSPA1672
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| SSPA1672 | -77 | 5.4 | CTGTAAAGTTTTATTTACGG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ompF | ||||
| Ortholog function: outer membrane porin F | ||||
| Salmonella typhimurium LT2 | STM0999 | -77 | 4.7 | CTGTAAAGTTTTATTGACGG |
| Enterobacter sp. 638 | Ent638_1448 | -77 | 4.5 | CCGGAAATATTTATTGACAG |
|
Position: -181
Score: 5.4 Sequence: CTGTAATGAAAAATTTACAG
Position: -107
Score: 5.8 Sequence: GTGTAAATTATTATTTACAT
Locus tag: SSPA2178
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| SSPA2178 | -181 | 5.4 | CTGTAATGAAAAATTTACAG | |
| -107 | 5.8 | GTGTAAATTATTATTTACAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aroL | ||||
| Ortholog function: Shikimate kinase III (EC 2.7.1.71) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0388 | -182 | 5.6 | ATGTAATTTATTATTTACAC |
| -106 | 5 | GTGGAATTTTTTCTTTACAA | ||
| Salmonella typhimurium LT2 | STM0388 | -181 | 5.4 | ATGTAATGAAAAATTTACAG |
| -107 | 5.8 | GTGTAAATTATTATTTACAT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_02783 | -238 | 5.4 | ATGTAATGTTATTTTTACAC |
| -163 | 5 | GTGGAATGATTTATTTACAT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00332 | -165 | 4.6 | ATGCAATGATAAGTTTACAT |
| -101 | 5.3 | GTGTAATTTTTTCTTTACGT | ||
| Enterobacter sp. 638 | Ent638_0859 | -182 | 4.5 | ATGCAATGATTTCTTTACAG |
| -108 | 4.9 | CTGTAATCCAATTTTTACAA | ||
| Erwinia amylovora ATCC 49946 | EAM_0932 | -126 | 4.5 | CTGTAAATAAAACGTTACTG |
| Yersinia pestis KIM | y0972 | -174 | 5 | GTGTATTATTAATTTTACGT |
| Serratia proteamaculans 568 | Spro_1018 | -122 | 4.9 | TCGTAAATATTGAAATACAG |
| Proteus mirabilis HI4320 | PMI0371 | -57 | 5.5 | TTGTAAATTTTAGATTACAC |
|
Position: -113
Score: 5.3 Sequence: GTGTAAAGTTTATTTTACGT
Locus tag: SSPA2354
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| SSPA2354 | -113 | 5.3 | GTGTAAAGTTTATTTTACGT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aroF | ||||
| Ortholog function: 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (EC 2.5.1.54) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2601 | -165 | 5.4 | GTGTAAATTTATCTATACAG |
| -113 | 5.4 | GTGTAAATAAAAATGTACGA | ||
| -90 | 4 | ATGGATTGAAAACTTTACTT | ||
| Salmonella typhimurium LT2 | STM2670 | -164 | 4.5 | GTGTAAAGTTTTTGATACGA |
| -113 | 5.3 | GTGTAAAGTTTATTTTACGT | ||
| -90 | 4 | ATGGATTGAAATCTTTACTT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03921 | -165 | 5.3 | ATGTAAATTTTTATGTACGA |
| -112 | 5.4 | ATGTAAAGTAAAATTTACGG | ||
| -89 | 4 | GTGGATTGAAATCTTTACCG | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02923 | -166 | 4.9 | GTGTAAATATTGTTATACGC |
| -113 | 5.7 | GTGTAAATTAAAATTTACGG | ||
| -90 | 4 | ATGGATTGAATTCTTTACTT | ||
| Enterobacter sp. 638 | Ent638_3080 | -165 | 5.4 | CTGTAATTTTATGTTTACGA |
| -112 | 5.7 | GTGTAAATTAAAATTTACGG | ||
| -89 | 4 | TTGGATTGAAATCTTTACTG | ||
| Erwinia amylovora ATCC 49946 | EAM_2621 | -202 | 5.3 | CTGTAATCTTTTATTTACGC |
| -106 | 4.1 | CTGGTAATTAATGTGTACAC | ||
| -73 | 4 | ATGTACTCATTATGGTACAG | ||
| Yersinia pestis KIM | y0903 | -114 | 5.2 | TAGTAATTATTTATTTACAA |
| -92 | 4.5 | ATGGATTGAAAACTTTACAT | ||
| Serratia proteamaculans 568 | Spro_0879 | -122 | 5.1 | TGGTAATTTTTTATTTACAG |
| -99 | 4.6 | TCGGATTTAAAACTTTACAT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3352 | -156 | 5.2 | TGGTAATTTTTTATTTACAC |
| -133 | 4.6 | GTGGATTTAAATCTTTACGG | ||
| Edwardsiella tarda EIB202 | ETAE_2837 | -129 | 4.6 | GTGTAAAGATGAATGTACGA |
| -117 | 4.6 | ATGTACGATATTGTTTACAT | ||
| -95 | 4 | ATGGATTGAAAAGTTTACTG | ||
| Proteus mirabilis HI4320 | PMI0387 | -244 | 5.6 | GTGTAAAATTAAAATTACAG |
| -127 | 5.2 | ATGTAAACATATGATTACGA | ||
| -85 | 4.5 | ATGGATTGATTTCTTTACAT | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1262 | -140 | 5.5 | TTGTAAACAATAATTTACAG |
| -98 | 4.3 | TTGGATTGTATTCTTTACGA | ||
|
Position: -213
Score: 5.2 Sequence: GCGTAAAGTAAAATATACAG
Locus tag: SSPA2937
|
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| SSPA2937 | -213 | 5.2 | GCGTAAAGTAAAATATACAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mtr | ||||
| Ortholog function: Tryptophan-specific transport protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3161 | -129 | 5.3 | CTGTAAAATAATATATACAG |
| Salmonella typhimurium LT2 | STM3279 | -129 | 5.2 | GCGTAAAGTAAAATATACAG |
| Citrobacter koseri ATCC BAA-895 | CKO_04558 | -129 | 5.1 | CCGTAAAGTAAAATATACAG |
| Enterobacter sp. 638 | Ent638_3598 | -128 | 5.2 | GCGTAAAGTAATATATACAG |