Propagation of NarP regulog to Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601
| Source regulog: | NarP - Enterobacteriales |
| Regulator type: | Transcription factor |
| Regulator family: | LuxR |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrate and nitrite respiration |
| Effector: | Nitrate; Nitrite |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601 |
| Orthologous TF(s) | SSPA0580 |
| Regulated genes | 24 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -131
Score: 4.1 Sequence: TACCCATTATGAGTCA
Locus tag: SSPA0071
|
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| SSPA0071 | -131 | 4.1 | TACCCATTATGAGTCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: caiT | ||||
| Ortholog function: L-carnitine/gamma-butyrobetaine antiporter | ||||
| Salmonella typhimurium LT2 | STM0074 | -131 | 4.1 | TACCCATCATGAGTTA |
|
Position: -204
Score: 4.3 Sequence: TACCTCCAGGTGGGTA
Locus tag: SSPA0151
|
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| SSPA0151 | -204 | 4.3 | TACCTCCAGGTGGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pdhR | ||||
| Ortholog function: Pyruvate utilization transcriptional regulator PdhR, GntR family | ||||
| Salmonella typhimurium LT2 | STM0151 | -204 | 4.3 | TACCTCCTGGTGGGTA |
| Citrobacter koseri ATCC BAA-895 | CKO_03260 | -204 | 4.2 | TACTCCCAGGGGAGTA |
| Serratia proteamaculans 568 | Spro_4012 | -198 | 4.2 | TACCTCGTAAATGGTA |
|
Position: -22
Score: 4.2 Sequence: TACTTTTCAAGGAGTA
Locus tag: SSPA0370
|
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| SSPA0370 | -22 | 4.2 | TACTTTTCAAGGAGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: talA | ||||
| Ortholog function: Transaldolase (EC 2.2.1.2) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2464 | -22 | 4.2 | TACTTTTCAAGGAGTA |
| Salmonella typhimurium LT2 | STM2473 | -22 | 4.2 | TACTTTTCAAGGAGTA |
| Citrobacter koseri ATCC BAA-895 | CKO_00330 | -22 | 4.2 | TACTTTTCAAGGAGTA |
|
Position: -104
Score: 4.3 Sequence: TACCTGATAGTGGGTA
Locus tag: SSPA0492
|
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| SSPA0492 | -104 | 4.3 | TACCTGATAGTGGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yfbV | ||||
| Ortholog function: Predicted membrane protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2295 | -104 | 4.3 | TACCTGATAGTGGGTA |
| Salmonella typhimurium LT2 | STM2336 | -104 | 4.3 | TACCTGATAGTGGGTA |
| Citrobacter koseri ATCC BAA-895 | CKO_00500 | -105 | 4.3 | TACCTGATAGTGGGTA |
|
Position: -132
Score: 4.8 Sequence: TACCTCTATCGGGGTA
Locus tag: SSPA0567
|
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| SSPA0567 | -132 | 4.8 | TACCTCTATCGGGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: napF | ||||
| Ortholog function: Periplasmic nitrate reductase, ferredoxin-type protein NapF | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2208 | -129 | 4.6 | TACCCCGATCGGGGTA |
| Salmonella typhimurium LT2 | STM2261 | -132 | 4.8 | TACCTCTATCGGGGTA |
| Yersinia pestis KIM | y1442 | -158 | 4.3 | TACTCATTATTCGGTA |
| Serratia proteamaculans 568 | Spro_3488 | -322 | 4.7 | TACCCCTTTAGGGGGA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1898 | -111 | 4.4 | TACCTCTAAAGGGTGA |
| Edwardsiella tarda EIB202 | ETAE_1114 | -156 | 3.9 | TAACCCAAAAGAGGAA |
|
Position: -230
Score: 3.9 Sequence: TTGCCCTTAATGAGTA
Position: -120
Score: 4.5 Sequence: TAACTCGTTATAGGTA
Locus tag: SSPA1033
|
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| SSPA1033 | -230 | 3.9 | TTGCCCTTAATGAGTA | |
| -120 | 4.5 | TAACTCGTTATAGGTA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: narX | ||||
| Ortholog function: Nitrate/nitrite sensor protein NarX (EC 2.7.3.-) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1222 | -228 | 4 | TTACCCATAGTGAGTA |
| -118 | 3.8 | TAACTCTTTCCGGGTA | ||
| Salmonella typhimurium LT2 | STM1766 | -230 | 4.3 | TTACCCTTAATGAGTA |
| -120 | 4.5 | TAACTCGTTATAGGTA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_01297 | -249 | 4.4 | TGCCCCTTAGTGAGTA |
| -139 | 4.5 | TAACTCGTTATAGGTA | ||
| Serratia proteamaculans 568 | Spro_2899 | -138 | 4.7 | TACTTCGTTAGAGGTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2029 | -217 | 4.2 | CACTCCTTAATGAGTA |
| -106 | 4.7 | TACTCACTAGTGGGTA | ||
| Proteus mirabilis HI4320 | PMI3569 | -73 | 4.5 | TACTCCCTTTGGAGTA |
|
Position: -236
Score: 4.2 Sequence: TACCTATAACGAGTTA
Locus tag: SSPA1034
|
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| SSPA1034 | -236 | 4.2 | TACCTATAACGAGTTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: narK | ||||
| Ortholog function: Nitrate/nitrite antiporter | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1223 | -236 | 4.1 | TACCCGGAAAGAGTTA |
| Salmonella typhimurium LT2 | STM1765 | -236 | 4.2 | TACCTATAACGAGTTA |
| -126 | 4 | TACTCATTAAGGGTAA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_01299 | -392 | 4.2 | TACCTATAACGAGTTA |
| -282 | 4.5 | TACTCACTAAGGGGCA | ||
|
Position: -159
Score: 4.5 Sequence: TCCTCCTAAAGGAGTA
Locus tag: SSPA1035
|
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| SSPA1035 | -159 | 4.5 | TCCTCCTAAAGGAGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: narG | ||||
| Ortholog function: Respiratory nitrate reductase, alpha chain (EC 1.7.99.4) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1224 | -158 | 4.3 | TTATCCTAAAGGGGTA |
| Salmonella typhimurium LT2 | STM1764 | -159 | 4.3 | TCCTCCCAAAGGAGTA |
| Citrobacter koseri ATCC BAA-895 | CKO_01301 | -158 | 4.6 | TCCTCCTTAAGGGGTA |
|
Position: -216
Score: 4.6 Sequence: TACTCAGAAGTGAGTA
Locus tag: SSPA1048
|
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| SSPA1048 | -216 | 4.6 | TACTCAGAAGTGAGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: adhE | ||||
| Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1241 | -215 | 4.7 | TACCCAGAAGTGAGTA |
| Salmonella typhimurium LT2 | STM1749 | -216 | 4.6 | TACTCAGAAGTGAGTA |
| Citrobacter koseri ATCC BAA-895 | CKO_01318 | -216 | 4.6 | TACTCAGAAGTGAGTA |
| Yersinia pestis KIM | y2023 | -260 | 4 | TACCTAAGAATAGTTA |
| Serratia proteamaculans 568 | Spro_2704 | -252 | 4 | TACCCAAGAGTAGTTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2326 | -289 | 4 | CACCCACAAATAGGTA |
| Edwardsiella tarda EIB202 | ETAE_1508 | -239 | 4.4 | TACCCAAGAATGAGTA |
|
Position: -55
Score: 4.7 Sequence: TACTTCATTGTGGGTA
Locus tag: SSPA1064
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| SSPA1064 | -55 | 4.7 | TACTTCATTGTGGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ompW | ||||
| Ortholog function: Outer membrane protein W precursor | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1256 | -55 | 4.5 | TACTCCAATGTAGGTA |
| Salmonella typhimurium LT2 | STM1732 | -55 | 4.7 | TACTTCATTGTGGGTA |
| Citrobacter koseri ATCC BAA-895 | CKO_01333 | -55 | 4.5 | TACTCCATTGTAGGTA |
| Yersinia pestis KIM | y2044 | -43 | 4.7 | TACTCATTTGTAGGTA |
| Serratia proteamaculans 568 | Spro_2674 | -28 | 4.5 | TACCCGTAAGTAGGTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2303 | -56 | 4.9 | TACCTACTTAGGGGTA |
| Edwardsiella tarda EIB202 | ETAE_1528 | -52 | 3.7 | TCACTCAATATGGTTA |
| Proteus mirabilis HI4320 | PMI1350 | -59 | 4.9 | TACTTATTAATGGGTA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2478 | -55 | 3.8 | TTCTAATATATGAGTA |
|
Position: -188
Score: 4.1 Sequence: TACCTCCCTGGAGTTA
Locus tag: SSPA1206
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| SSPA1206 | -188 | 4.1 | TACCTCCCTGGAGTTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fdnG | ||||
| Ortholog function: Formate dehydrogenase N, alpha subunit (EC 1.2.1.2) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1474 | -141 | 4.3 | TACCGCTATTGAGGTA |
| Salmonella typhimurium LT2 | STM1570 | -188 | 4.1 | TACCTCCCTGGAGTTA |
|
Position: -98
Score: 5 Sequence: TACTCCCAAAGGGGTA
Locus tag: SSPA1261
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| SSPA1261 | -98 | 5 | TACTCCCAAAGGGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ynfE | ||||
| Ortholog function: Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1587 | -92 | 4.7 | TAACCCAAAATGGGTA |
| Salmonella typhimurium LT2 | STM1499 | -95 | 5 | TACTCCCAAAGGGGTA |
| Citrobacter koseri ATCC BAA-895 | CKO_01581 | -93 | 4.8 | TACCTATAAGGGGTTA |
| -20 | 3.8 | TAACTATAATGGAGTG | ||
| Serratia proteamaculans 568 | Spro_1687 | -143 | 4.3 | TACCCACTTCTGAGTA |
|
Position: -99
Score: 3.7 Sequence: TAACCAATAAATGGTA
Locus tag: SSPA1463
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| SSPA1463 | -99 | 3.7 | TAACCAATAAATGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yeaR | ||||
| Ortholog function: Conserved hypothetical protein | ||||
| Salmonella typhimurium LT2 | STM1271 | -99 | 3.7 | TAACCAATAAATGGTA |
|
Position: -160
Score: 4.6 Sequence: TACCCTATTAGGGGTA
Locus tag: SSPA1706
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| SSPA1706 | -160 | 4.6 | TACCCTATTAGGGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dmsA | ||||
| Ortholog function: Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0894 | -180 | 3.4 | TACCGAACAATAATTA |
| Salmonella typhimurium LT2 | STM0964 | -161 | 4.6 | TACCCTATTAGGGGTA |
| Citrobacter koseri ATCC BAA-895 | CKO_02177 | -166 | 5.2 | TACCCCTTTGGGGGTA |
|
Position: -91
Score: 4.2 Sequence: TAATCGTTAATGGGTA
Locus tag: SSPA1838
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| SSPA1838 | -91 | 4.2 | TAATCGTTAATGGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: modA | ||||
| Ortholog function: Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0763 | -90 | 3.9 | TACCTCACAAAGGTTA |
| Salmonella typhimurium LT2 | STM0781 | -91 | 4.2 | TAATCGTTAATGGGTA |
| Citrobacter koseri ATCC BAA-895 | CKO_02372 | -90 | 4 | TAACCTCAATTGGGTA |
|
Position: -48
Score: 4.3 Sequence: TTCCCATAATTGGGTA
Locus tag: SSPA2983
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| SSPA2983 | -48 | 4.3 | TTCCCATAATTGGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: arcB | ||||
| Ortholog function: Aerobic respiration control sensor protein arcB (EC 2.7.3.-) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3210 | -112 | 4.6 | TACCTCCAACGGAGTA |
| Salmonella typhimurium LT2 | STM3328 | -48 | 4.3 | TTCCCATAATTGGGTA |
| Citrobacter koseri ATCC BAA-895 | CKO_04614 | -49 | 3.8 | TGCTCAGAATTGAGTA |
|
Position: -101
Score: 5 Sequence: TACCCATTAAGAGGTA
Locus tag: SSPA3118
|
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| SSPA3118 | -101 | 5 | TACCCATTAAGAGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nirB | ||||
| Ortholog function: Nitrite reductase large subunit (EC 1.7.1.4) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3365 | -101 | 5.1 | TACCCATTAAGGAGTA |
| Salmonella typhimurium LT2 | STM3474 | -101 | 5 | TACCCATTAAGAGGTA |
| Citrobacter koseri ATCC BAA-895 | CKO_04789 | -101 | 5.2 | TACCTCTTAAGGAGTA |
| Yersinia pestis KIM | y3945 | -100 | 4.5 | TACCACCTTAGAGGTA |
| Serratia proteamaculans 568 | Spro_4595 | -197 | 4.5 | TACTCCCGAATGGGTA |
| -101 | 4.5 | TACCACATTAGAGGTA | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4079 | -100 | 4.8 | TACCCACAAAGAAGTA |
| Proteus mirabilis HI4320 | PMI1479 | -134 | 4.1 | TACTACTTTGGTAGTA |
|
Position: -30
Score: 4.5 Sequence: TACCTCGAAGTGAGCA
Locus tag: SSPA3466
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| SSPA3466 | -30 | 4.5 | TACCTCGAAGTGAGCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: atpI | ||||
| Ortholog function: ATP synthase maturation | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3739 | -31 | 4.6 | TACCTCGAAGGGAGCA |
| Salmonella typhimurium LT2 | STM3872 | -30 | 4.5 | TACCTCGAAGTGAGCA |
| Citrobacter koseri ATCC BAA-895 | CKO_00079 | -30 | 4.6 | TACCTCGAAGGGAGCA |
| Serratia proteamaculans 568 | Spro_0001 | -33 | 4.6 | TACCTCCTCAGGGGTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4519 | -33 | 4.3 | TACCTCTGAAAAGGTA |
| Edwardsiella tarda EIB202 | ETAE_3526 | -156 | 4.4 | TACCTCCTGGGGGGTA |
|
Position: -100
Score: 4.7 Sequence: TACCCATAAAGGAGCA
Locus tag: SSPA3864
|
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| SSPA3864 | -100 | 4.7 | TACCCATAAAGGAGCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: frdA | ||||
| Ortholog function: Fumarate reductase subunit A (EC 1.3.5.4) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4154 | -101 | 4.7 | TACCTATAAAGGAGCA |
| Salmonella typhimurium LT2 | STM4343 | -100 | 4.7 | TACCCATAAAGGAGCA |
| Citrobacter koseri ATCC BAA-895 | CKO_03678 | -60 | 4.7 | TACCTATAAAGGAGCA |
|
Position: -78
Score: 3.9 Sequence: CACCCCGAAAGAGTTA
Locus tag: SSPA3917
|
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| SSPA3917 | -78 | 3.9 | CACCCCGAAAGAGTTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dnrN | ||||
| Ortholog function: Nitric oxide-dependent regulator DnrN | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4209 | -79 | 3.7 | TGCTACGTAAGGGTTA |
| Salmonella typhimurium LT2 | STM4399 | -78 | 3.9 | CACCCCGAAAGAGTTA |
| Citrobacter koseri ATCC BAA-895 | CKO_03623 | -78 | 3.9 | TGACCCGAAAGGGTTA |
| Yersinia pestis KIM | y0652 | -108 | 4.4 | TACCCACTTGGAGTTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3606 | -81 | 4.8 | TACCTCGTAAGCGGTA |