Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of AraC regulog to Escherichia coli 536

Reference regulog properties
Source regulog: AraC - Enterobacterales
Regulator type: Transcription factor
Regulator family: AraC
Regulation mode: activator (repressor)
Biological process: Arabinose utilization
Effector: Arabinose
Phylum: Proteobacteria
Propagated regulon:
Target genome Escherichia coli 536
Orthologous TF(s) ECP_0065
Regulated genes 4
Built upon 56 sites [see more]
Predicted regulatory interactions in Escherichia coli 536
Locus tag Position Score Sequence
Position: -173
Score: 8.7
Sequence: TAACAAAAGTGTCTATA-(4)-CGGCAGAAAAGTCCACA
Position: -99
Score: 8.4
Sequence: TAGCATTTTTATCCATA-(4)-TAGCGGATCCAGCCTGA
Locus tag: ECP_0064
ECP_0064 -173 8.7 TAACAAAAGTGTCTATA-(4)-CGGCAGAAAAGTCCACA
-99 8.4 TAGCATTTTTATCCATA-(4)-TAGCGGATCCAGCCTGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: araB
Ortholog function: Ribulokinase (EC 2.7.1.16)
Citrobacter koseri ATCC BAA-895 CKO_03319 -174 8.3 TAACAAAAGTGTCTATA-(4)-CGACAGAAATGTCCACA
-100 8.1 TAGCATTTTAATCCATA-(4)-TAGCGGATCCTGCCTGA
Enterobacter sp. 638 Ent638_0610 -172 8.6 TAACAAAAGTGTCTATA-(4)-CGGCAGAAATGTCCACA
-98 8.1 CAGCAATTTAATCCATA-(4)-TAGCGGATCCTGCCTGA
Escherichia coli str. K-12 substr. MG1655 b0063 -173 8.7 TAACAAAAGTGTCTATA-(4)-CGGCAGAAAAGTCCACA
-99 8 TAGCATTTTTATCCATA-(4)-TAGCGGATCCTACCTGA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00062 -172 8.7 TAACAAAAGTGTCTATA-(4)-CGGCAGAAAAGTCCACA
-98 8.5 CAGCAAAATAATCCATA-(4)-TAGCGAATCCGGCCTGA
Salmonella typhimurium LT2 STM0103 -173 8.4 TAACAGAAGTGTCTATA-(4)-TGGCTGGAATGTCCACA
-99 8.1 TAGCATTTTTGTCCATA-(4)-TAGCGGATCCTGCCTGA
Position: -99
Score: 6.8
Sequence: TAGCAATTTAATCCATA-(4)-TGCTATTTCCGACCTGA
Locus tag: ECP_2854
ECP_2854 -99 6.8 TAGCAATTTAATCCATA-(4)-TGCTATTTCCGACCTGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: araE
Ortholog function: Low-affinity L-arabinose transport system proton symport protein
Enterobacter sp. 638 Ent638_3294 -179 4.6 TATAAATTAAGTATTTA-(4)-TAAATGATGATTATTCA
-158 4.8 TAAATGATGATTATTCA-(4)-AAGTTTAAATTGGAATA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03264 -159 7.5 CAGCAATATAGTCCATA-(4)-TGGCTTATCCTGCCTGA
-73 4.9 TGGCAGGAAAAAAATGA-(4)-AATCAGTAACGACTCTA
Salmonella typhimurium LT2 STM3016 -99 6.9 TAGCCATTTAATCCATA-(4)-TGCCGTTTCCAGCCTGA
Position: -188
Score: 7.8
Sequence: GAGCAGGAAAATCCATA-(4)-TAGCCGCATTTTTCATA
Locus tag: ECP_4477
ECP_4477 -188 7.8 GAGCAGGAAAATCCATA-(4)-TAGCCGCATTTTTCATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ytfQ
Ortholog function: Galactose/arabinose ABC transport system, periplasmic binding protein YtfQ precursor
Citrobacter koseri ATCC BAA-895 CKO_03603 -189 7.5 TGACAGGAAAATCCATA-(4)-CAGCTGCTTTTTTCATA
Enterobacter sp. 638 Ent638_0412 -189 7.3 TGACAGGAAAATCCATA-(4)-TAGCCACATATTCAATG
Escherichia coli str. K-12 substr. MG1655 b4227 -188 7.8 GAGCAGGAAAATCCATA-(4)-TAGCCGCATTTTTCATA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04622 -324 7.4 TGACATGAAAATCCATA-(4)-TAGCCACATCATGAATA
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