Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of NarP regulog to Escherichia coli 536

Reference regulog properties
Source regulog: NarP - Enterobacteriales
Regulator type: Transcription factor
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrate; Nitrite
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Escherichia coli 536
Orthologous TF(s) ECP_2233
Regulated genes 21
Built upon 125 sites [see more]
Predicted regulatory interactions in Escherichia coli 536
Locus tag Position Score Sequence
Position: -122
Score: 4.4
Sequence: TACCCATTATGAGTTA
Locus tag: ECP_0040
ECP_0040 -122 4.4 TACCCATTATGAGTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: caiT
Ortholog function: L-carnitine/gamma-butyrobetaine antiporter
Escherichia coli str. K-12 substr. MG1655 b0040 -122 4.4 TACCCATTATGAGTTA
Position: -218
Score: 4.1
Sequence: TACCGCGTACTGGGTA
Locus tag: ECP_0122
ECP_0122 -218 4.1 TACCGCGTACTGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: aceF
Ortholog function: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
Salmonella typhimurium LT2 STM0153 -204 4.3 TACCTCCTGGTGGGTA
Citrobacter koseri ATCC BAA-895 CKO_03258 -204 4.2 TACTCCCAGGGGAGTA
Serratia proteamaculans 568 Spro_4010 -198 4.2 TACCTCGTAAATGGTA
Position: -143
Score: 4.5
Sequence: TACCTCTCTGGCGGTA
Locus tag: ECP_0888
ECP_0888 -143 4.5 TACCTCTCTGGCGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hcp
Ortholog function: Hydroxylamine reductase (EC 1.7.-.-)
Escherichia coli str. K-12 substr. MG1655 b0873 -143 4.5 TACCTCTCTGGCGGTA
Position: -180
Score: 3.4
Sequence: TACCGAACAATAATTA
Position: -163
Score: 3.4
Sequence: TCCTCACTTACAAGTA
Locus tag: ECP_0908
ECP_0908 -180 3.4 TACCGAACAATAATTA
-163 3.4 TCCTCACTTACAAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dmsA
Ortholog function: Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-)
Escherichia coli str. K-12 substr. MG1655 b0894 -180 3.4 TACCGAACAATAATTA
Salmonella typhimurium LT2 STM0964 -161 4.6 TACCCTATTAGGGGTA
Citrobacter koseri ATCC BAA-895 CKO_02177 -166 5.2 TACCCCTTTGGGGGTA
Position: -158
Score: 4.3
Sequence: TTATCCTAAAGGGGTA
Locus tag: ECP_1274
ECP_1274 -158 4.3 TTATCCTAAAGGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: narG
Ortholog function: Respiratory nitrate reductase, alpha chain (EC 1.7.99.4)
Escherichia coli str. K-12 substr. MG1655 b1224 -158 4.3 TTATCCTAAAGGGGTA
Salmonella typhimurium LT2 STM1764 -159 4.3 TCCTCCCAAAGGAGTA
Citrobacter koseri ATCC BAA-895 CKO_01301 -158 4.6 TCCTCCTTAAGGGGTA
Position: -215
Score: 4.7
Sequence: TACCCAGAAGTGAGTA
Locus tag: ECP_1287
ECP_1287 -215 4.7 TACCCAGAAGTGAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhE
Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
Escherichia coli str. K-12 substr. MG1655 b1241 -215 4.7 TACCCAGAAGTGAGTA
Salmonella typhimurium LT2 STM1749 -216 4.6 TACTCAGAAGTGAGTA
Citrobacter koseri ATCC BAA-895 CKO_01318 -216 4.6 TACTCAGAAGTGAGTA
Yersinia pestis KIM y2023 -260 4 TACCTAAGAATAGTTA
Serratia proteamaculans 568 Spro_2704 -252 4 TACCCAAGAGTAGTTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2326 -289 4 CACCCACAAATAGGTA
Edwardsiella tarda EIB202 ETAE_1508 -239 4.4 TACCCAAGAATGAGTA
Position: -7
Score: 4.9
Sequence: TACCCCAATGTGGGTA
Locus tag: ECP_1304
ECP_1304 -7 4.9 TACCCCAATGTGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompW
Ortholog function: Outer membrane protein W precursor
Escherichia coli str. K-12 substr. MG1655 b1256 -55 4.5 TACTCCAATGTAGGTA
Salmonella typhimurium LT2 STM1732 -55 4.7 TACTTCATTGTGGGTA
Citrobacter koseri ATCC BAA-895 CKO_01333 -55 4.5 TACTCCATTGTAGGTA
Yersinia pestis KIM y2044 -43 4.7 TACTCATTTGTAGGTA
Serratia proteamaculans 568 Spro_2674 -28 4.5 TACCCGTAAGTAGGTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2303 -56 4.9 TACCTACTTAGGGGTA
Edwardsiella tarda EIB202 ETAE_1528 -52 3.7 TCACTCAATATGGTTA
Proteus mirabilis HI4320 PMI1350 -59 4.9 TACTTATTAATGGGTA
Photorhabdus luminescens subsp. laumondii TTO1 plu2478 -55 3.8 TTCTAATATATGAGTA
Position: -141
Score: 4.3
Sequence: TACCGCTATTGAGGTA
Locus tag: ECP_1474
ECP_1474 -141 4.3 TACCGCTATTGAGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fdnG
Ortholog function: Formate dehydrogenase N, alpha subunit (EC 1.2.1.2)
Escherichia coli str. K-12 substr. MG1655 b1474 -141 4.3 TACCGCTATTGAGGTA
Salmonella typhimurium LT2 STM1570 -188 4.1 TACCTCCCTGGAGTTA
Position: -164
Score: 4.5
Sequence: TAACCATAAAGGATTA
Locus tag: ECP_1621
ECP_1621 -164 4.5 TAACCATAAAGGATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ydhY
Ortholog function: Predicted oxidoreductase, FeS cluster subunit
Escherichia coli str. K-12 substr. MG1655 b1674 -163 4.5 TAACCATAAAGGATTA
Citrobacter koseri ATCC BAA-895 CKO_01699 -111 4.4 TAACTCTTTGGGATTA
Position: -97
Score: 3.7
Sequence: TAACCAATAAATGGTA
Locus tag: ECP_1744
ECP_1744 -97 3.7 TAACCAATAAATGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yeaR
Ortholog function: Conserved hypothetical protein
Escherichia coli str. K-12 substr. MG1655 b1797 -97 3.7 TAACCAATAAATGGTA
Position: -91
Score: 4
Sequence: TACATAAAATGGGGTA
Locus tag: ECP_2233
ECP_2233 -91 4 TACATAAAATGGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: narP
Ortholog function: Nitrate/nitrite response regulator protein NarP, LuxR family
Escherichia coli str. K-12 substr. MG1655 b2193 -91 4 TACATAAAATGGGGTA
Serratia proteamaculans 568 Spro_3490 -243 4.8 TCCCCCTAAAGGGGTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1901 -257 4.3 TCACCCTTTAGAGGTA
Edwardsiella tarda EIB202 ETAE_1111 -169 4.1 TTCCTCTTTTGGGTTA
Position: -104
Score: 4.3
Sequence: TACCTGATAGTGGGTA
Locus tag: ECP_2334
ECP_2334 -104 4.3 TACCTGATAGTGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yfbV
Ortholog function: Predicted membrane protein
Escherichia coli str. K-12 substr. MG1655 b2295 -104 4.3 TACCTGATAGTGGGTA
Salmonella typhimurium LT2 STM2336 -104 4.3 TACCTGATAGTGGGTA
Citrobacter koseri ATCC BAA-895 CKO_00500 -105 4.3 TACCTGATAGTGGGTA
Position: -22
Score: 4.2
Sequence: TACTTTTCAAGGAGTA
Locus tag: ECP_2476
ECP_2476 -22 4.2 TACTTTTCAAGGAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: talA
Ortholog function: Transaldolase (EC 2.2.1.2)
Escherichia coli str. K-12 substr. MG1655 b2464 -22 4.2 TACTTTTCAAGGAGTA
Salmonella typhimurium LT2 STM2473 -22 4.2 TACTTTTCAAGGAGTA
Citrobacter koseri ATCC BAA-895 CKO_00330 -22 4.2 TACTTTTCAAGGAGTA
Position: -118
Score: 4.5
Sequence: TACTCATTAATGAGCA
Locus tag: ECP_2670
ECP_2670 -118 4.5 TACTCATTAATGAGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: norV
Ortholog function: Nitric oxide reductase, flavorubredoxin (EC 1.18.1.-)
Escherichia coli str. K-12 substr. MG1655 b2710 -118 4.6 TACTCATTAATGGGCA
Citrobacter koseri ATCC BAA-895 CKO_04064 -118 4.2 TACCATTTTATGAGTA
Position: -101
Score: 5.2
Sequence: TACCCCTTAAGGAGTA
Locus tag: ECP_3456
ECP_3456 -101 5.2 TACCCCTTAAGGAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nirB
Ortholog function: Nitrite reductase large subunit (EC 1.7.1.4)
Escherichia coli str. K-12 substr. MG1655 b3365 -101 5.1 TACCCATTAAGGAGTA
Salmonella typhimurium LT2 STM3474 -101 5 TACCCATTAAGAGGTA
Citrobacter koseri ATCC BAA-895 CKO_04789 -101 5.2 TACCTCTTAAGGAGTA
Yersinia pestis KIM y3945 -100 4.5 TACCACCTTAGAGGTA
Serratia proteamaculans 568 Spro_4595 -197 4.5 TACTCCCGAATGGGTA
-101 4.5 TACCACATTAGAGGTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4079 -100 4.8 TACCCACAAAGAAGTA
Proteus mirabilis HI4320 PMI1479 -134 4.1 TACTACTTTGGTAGTA
Position: -19
Score: 4.6
Sequence: TACCTCGAAGGGAGCA
Locus tag: ECP_3938
ECP_3938 -19 4.6 TACCTCGAAGGGAGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: atpI
Ortholog function: ATP synthase maturation
Escherichia coli str. K-12 substr. MG1655 b3739 -31 4.6 TACCTCGAAGGGAGCA
Salmonella typhimurium LT2 STM3872 -30 4.5 TACCTCGAAGTGAGCA
Citrobacter koseri ATCC BAA-895 CKO_00079 -30 4.6 TACCTCGAAGGGAGCA
Serratia proteamaculans 568 Spro_0001 -33 4.6 TACCTCCTCAGGGGTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4519 -33 4.3 TACCTCTGAAAAGGTA
Edwardsiella tarda EIB202 ETAE_3526 -156 4.4 TACCTCCTGGGGGGTA
Position: -101
Score: 4.7
Sequence: TACCTATAAAGGAGCA
Locus tag: ECP_4400
ECP_4400 -101 4.7 TACCTATAAAGGAGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: frdA
Ortholog function: Fumarate reductase subunit A (EC 1.3.5.4)
Escherichia coli str. K-12 substr. MG1655 b4154 -101 4.7 TACCTATAAAGGAGCA
Salmonella typhimurium LT2 STM4343 -100 4.7 TACCCATAAAGGAGCA
Citrobacter koseri ATCC BAA-895 CKO_03678 -60 4.7 TACCTATAAAGGAGCA
Position: -79
Score: 3.7
Sequence: TGCTACGTAAGGGTTA
Locus tag: ECP_4463
ECP_4463 -79 3.7 TGCTACGTAAGGGTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dnrN
Ortholog function: Nitric oxide-dependent regulator DnrN
Escherichia coli str. K-12 substr. MG1655 b4209 -79 3.7 TGCTACGTAAGGGTTA
Salmonella typhimurium LT2 STM4399 -78 3.9 CACCCCGAAAGAGTTA
Citrobacter koseri ATCC BAA-895 CKO_03623 -78 3.9 TGACCCGAAAGGGTTA
Yersinia pestis KIM y0652 -108 4.4 TACCCACTTGGAGTTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3606 -81 4.8 TACCTCGTAAGCGGTA
© 2009-2020 RegPrecise