Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of NtrC regulog to Providencia rettgeri DSM 1131

Reference regulog properties
Source regulog: NtrC - Enterobacteriales
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Providencia rettgeri DSM 1131
Orthologous TF(s) PROVRETT_01434
Regulated genes 4
Built upon 130 sites [see more]
Predicted regulatory interactions in Providencia rettgeri DSM 1131
Locus tag Position Score Sequence
Position: -257
Score: 5.7
Sequence: AGCACCAAAATAGTGCA
Position: -226
Score: 5.7
Sequence: AGCACCAAAATAGTGCA
Locus tag: PROVRETT_01432
PROVRETT_01432 -257 5.7 AGCACCAAAATAGTGCA
-226 5.7 AGCACCAAAATAGTGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnA
Ortholog function: Glutamine synthetase type I (EC 6.3.1.2)
Escherichia coli str. K-12 substr. MG1655 b3870 -221 5.9 TGCACCAACATGGTGCT
-189 5.4 AGCACTATATTGGTGCA
Salmonella typhimurium LT2 STM4007 -224 5.5 TGCACCAATGTGGTGCT
-192 5.2 AGCACTATTTTGGTGCA
Citrobacter koseri ATCC BAA-895 CKO_03140 -202 5.9 TGCACCAACATGGTGCT
-170 5.4 AGCACTATATTGGTGCA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04178 -251 6 TGCACCAAAATGGTGCT
-219 5.2 AGCACTATTTTGGTGCA
Enterobacter sp. 638 Ent638_4096 -237 5.3 CGCACCATTATGGTGCT
-205 5.6 AGCACTATAATGGTGCA
Erwinia amylovora ATCC 49946 EAM_0032 -288 5.1 TGCACCAAAATGGTGAC
-256 5.3 AGCACCAGAATGGTGCG
Yersinia pestis KIM y3804 -384 5.6 TGCACCAAAATAGTGCC
-353 5.5 GGCACCAAAATAGTGCA
Serratia proteamaculans 568 Spro_4881 -220 5.2 TGCACCATTACAGTGCT
-188 5.2 TGCACCATTTAAGTGCA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0029 -218 5.3 TGCACCAAACAAGTGCA
-186 5.4 AGCACCAACTTGGTGCT
Edwardsiella tarda EIB202 ETAE_3493 -220 5.5 TGCACCAAGATTGTGCG
-188 5.2 TGCACCATTATGGAGCA
Proteus mirabilis HI4320 PMI2882 -223 5.9 TGCACCAAAATTGTGCA
-189 5.8 TGCACCAAATTTGTGCA
Photorhabdus luminescens subsp. laumondii TTO1 plu0237 -303 5.1 CGCACTAATATTGTGCG
-272 5.9 TGCACCAATATAGTGCA
Position: -30
Score: 6.1
Sequence: TGCACCAAAATAGTGCA
Locus tag: PROVRETT_01433
PROVRETT_01433 -30 6.1 TGCACCAAAATAGTGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ntrB
Ortholog function: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Escherichia coli str. K-12 substr. MG1655 b3869 -38 6.1 TGCACTAAAATGGTGCA
Salmonella typhimurium LT2 STM4006 -39 6.1 TGCACTAAAATGGTGCA
Citrobacter koseri ATCC BAA-895 CKO_03143 -40 6 TGCACTAAATTGGTGCA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04177 -39 6 TGCACTAAATTGGTGCA
Enterobacter sp. 638 Ent638_4097 -38 5.8 TGCACTAAATTAGTGCA
Erwinia amylovora ATCC 49946 EAM_0031 -40 5.7 TGCACTAAGTTGGTGCA
Yersinia pestis KIM y3805 -29 5.3 TGCACCGAAACTGTGCA
Serratia proteamaculans 568 Spro_4882 -29 5.8 TGCACTAAAAAGGTGCA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0028 -29 5.2 TGCACCATGCTGGTGCG
Edwardsiella tarda EIB202 ETAE_3494 -28 6.1 TGCACCAAAATAGTGCA
Proteus mirabilis HI4320 PMI2883 -32 6.1 TGCACTAAAATGGTGCA
Photorhabdus luminescens subsp. laumondii TTO1 plu0236 -26 5.7 TGCACCAAAAAAGTGCA
Position: -344
Score: 4.8
Sequence: TGCACCTTAACAGTGCG
Position: -294
Score: 4.3
Sequence: ATCACCATGTTAGTGCG
Locus tag: PROVRETT_03217
PROVRETT_03217 -344 4.8 TGCACCTTAACAGTGCG
-294 4.3 ATCACCATGTTAGTGCG
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltI
Ortholog function: Glutamate-aspartate ABC transporter, substrate-binding component
Yersinia pestis KIM y1189 -278 4.2 TGCCTCTATTTGGTGCG
Serratia proteamaculans 568 Spro_1214 -212 4.8 GGCACCATAAGGGTGCA
-183 5 TGCATTAATTTGGTGCG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1314 -300 5.3 CGCACCAAATTGGTGCC
Photorhabdus luminescens subsp. laumondii TTO1 plu1307 -239 4.2 TGCACCAAAAAAATGAT
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