Propagation of Crp regulog to Providencia rettgeri DSM 1131

Reference regulog properties
Source regulog:	Crp - Enterobacteriales
Regulator type:	Transcription factor
Regulator family:	CRP
Regulation mode:	activator (repressor)
Biological process:	Carbon catabolism
Effector:	Cyclic 3',5'-AMP
Phylum:	Proteobacteria/gamma
Propagated regulon:
Target genome	Providencia rettgeri DSM 1131
Orthologous TF(s)	PROVRETT_01371
Regulated genes	195

Built upon 2301 sites [see more]

Predicted regulatory interactions in *Providencia rettgeri DSM 1131*
	Locus tag	Position	Score	Sequence
Position: -37 Score: 3.7 Sequence: TGTTTTGATCTTATGCTTATTT Locus tag: PROVRETT_00003
	PROVRETT_00003	-37	3.7	TGTTTTGATCTTATGCTTATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: aceB
Ortholog function: malate synthase A
Escherichia coli str. K-12 substr. MG1655	b4014	-117	3.6	AATTGTTTTTGATTTTGCATTT
Salmonella typhimurium LT2	STM4183	-168	3.3	TTAATTTATATTGTTATCAATA
Citrobacter koseri ATCC BAA-895	CKO_03906	-166	3.3	TATTTTTATTGTTATCAATAAG
Yersinia pestis KIM	y0015	-254	3.3	ATGAGTTATAGCCATTAAAAAT
Serratia proteamaculans 568	Spro_4503	-228	3.5	TGTTGTTATGTTTATTAACCAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3991	-185	3.3	TTTTTTAATTTTAATCTTCATT
Proteus mirabilis HI4320	PMI2764	-68	3.7	ATTTTTGATTTTTGTAAAAACT
Photorhabdus luminescens subsp. laumondii TTO1	plu4396	-65	3.8	GTTTTTGATTTATTTTAAATAT

Position: -42 Score: 3.4 Sequence: AAATTCGATAAACCCTACATAT Locus tag: PROVRETT_00004
	PROVRETT_00004	-42	3.4	AAATTCGATAAACCCTACATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: aceA
Ortholog function: isocitrate lyase
Yersinia pestis KIM	y0016	-254	3.3	ATGAGTTATAGCCATTAAAAAT
Serratia proteamaculans 568	Spro_4502	-228	3.5	TGTTGTTATGTTTATTAACCAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3990	-185	3.3	TTTTTTAATTTTAATCTTCATT
Proteus mirabilis HI4320	PMI2763	-68	3.7	ATTTTTGATTTTTGTAAAAACT
Photorhabdus luminescens subsp. laumondii TTO1	plu4395	-65	3.8	GTTTTTGATTTATTTTAAATAT

Position: -95 Score: 4.7 Sequence: CAATTTGAGCCAGTTCACATTT Locus tag: PROVRETT_00163
	PROVRETT_00163	-95	4.7	CAATTTGAGCCAGTTCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: deaD
Ortholog function: ATP-independent RNA helicase
Salmonella typhimurium LT2	STM3280.S	-154	3.9	CTTTTTGATTGCCATCACCTTC
		-99	4.4	TACTTTGAGCCGGTTCACACTT
Citrobacter koseri ATCC BAA-895	CKO_04559	-103	3.9	CTTTTTGATTGCCATCACCTTC
		-48	4.4	TACTTTGAGCCGGTTCACACTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03570	-154	3.8	TTTTTTGCTTGCCATCACCTTC
		-99	4.4	TACTTTGAGCCGGTTCACACAT
Enterobacter sp. 638	Ent638_3599	-154	4.1	TCTTATGATTGCCATCACCTTA
		-99	4.4	TACTTTGAGCCGGTTCACACTT
Erwinia amylovora ATCC 49946	EAM_3065	-99	4.8	TAATTTGAGCCGGTTCACACTT
Yersinia pestis KIM	y0696	-96	4.8	TAATTTGAGCCGGTTCACACTT
Serratia proteamaculans 568	Spro_0495	-96	4.8	TAATTTGAGCCGGTTCACACTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0718	-96	4.4	CAATTTGAGCCGGTTCACACTT
Edwardsiella tarda EIB202	ETAE_0411	-96	4.8	TAATTTGAGCCGGTTCACACTT
Proteus mirabilis HI4320	PMI3424	-80	5	TAATTTGAGCCAGTTCACATTT
Photorhabdus luminescens subsp. laumondii TTO1	plu4523	-95	5	TAATTTGAGCCAGTTCACATTT

Position: 12 Score: 3.7 Sequence: ATTTGCGAATTAGCTCAAGAAG Locus tag: PROVRETT_00212
	PROVRETT_00212	12	3.7	ATTTGCGAATTAGCTCAAGAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: cysQ
Ortholog function: PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase
Escherichia coli str. K-12 substr. MG1655	b4214	-126	3.6	AACAGTGAAGAATGCCACAATT
Salmonella typhimurium LT2	STM4404	-144	3.9	TTTTTTGCGAGTGTTCACAGAA
Citrobacter koseri ATCC BAA-895	CKO_03615	-178	4.1	TTTTTAGATCTGAAACACAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04608	-178	4.1	TTTTATGAGCGATAGCACAGAA
		-126	3.7	AAATGTGAATCTTGCCAGAAAA
		-57	3.9	TGATGCGATATAAATAAAACAA
Enterobacter sp. 638	Ent638_0393	-167	3.9	TTTTTCGATCCAAGCCACAAAA
Erwinia amylovora ATCC 49946	EAM_0455	-158	4.2	AAATGTGACACAGCACGAATAA
Serratia proteamaculans 568	Spro_0454	-180	3.7	AACTGTGAAGTGTGGCAGAAAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3601	-258	3.7	TAAAGTGATTATCGTCTCTAAA

Position: -292 Score: 4.7 Sequence: TTATGTGATCTACTTTACCCTT Position: -262 Score: 4 Sequence: AGGTGTTAAATTGATCACGTTT Locus tag: PROVRETT_00267
	PROVRETT_00267	-292	4.7	TTATGTGATCTACTTTACCCTT
		-262	4	AGGTGTTAAATTGATCACGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cyaA
Ortholog function: Adenylate cyclase (EC 4.6.1.1)
Proteus mirabilis HI4320	PMI3333	-130	4	AGGTGTTAAATTGATCACGTTT
Photorhabdus luminescens subsp. laumondii TTO1	plu4643	-126	4	AGGTGTTAAATTGATCACGTTT

Position: -350 Score: 3.4 Sequence: ATTTGTGATAGCTGATGAAAAA Position: -181 Score: 3.9 Sequence: TCTTGTGAATGAATTAACATTG Locus tag: PROVRETT_00373
	PROVRETT_00373	-350	3.4	ATTTGTGATAGCTGATGAAAAA
		-181	3.9	TCTTGTGAATGAATTAACATTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: acnB
Ortholog function: Aconitate hydratase 2 (EC 4.2.1.3)
Escherichia coli str. K-12 substr. MG1655	b0118	-144	3.5	TTTTGTAAACAGATTAACACCT
Salmonella typhimurium LT2	STM0158	-157	3.9	TTTTGTAAACAGATTAACACTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00124	-260	3.5	TTTTGTAAACAGATTAACACCT
Yersinia pestis KIM	y0771	-276	4.3	TTATGTGAACGAATTAACACTG
Serratia proteamaculans 568	Spro_4008	-192	3.9	TTATGTGAACGAATTAACAACC
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3778	-163	4.3	TTATGTGAACGAATTAACAATC
Proteus mirabilis HI4320	PMI2040	-177	4.5	TTATGTGAACGAATTAACATAG
Photorhabdus luminescens subsp. laumondii TTO1	plu3619	-261	3.6	TTCTGTGAACGAATTAACATCG

Position: -218 Score: 3.4 Sequence: ATTTATGTTTCAATTGACAATA Position: -159 Score: 4.1 Sequence: AATTGTTTTTCCCGTCACAAAT Position: -122 Score: 4.1 Sequence: CAGTTTGATTTTAAACACATTT Position: -50 Score: 3.8 Sequence: TATAGTTATCTCAATTTCATTA Locus tag: PROVRETT_00419
	PROVRETT_00419	-218	3.4	ATTTATGTTTCAATTGACAATA
		-159	4.1	AATTGTTTTTCCCGTCACAAAT
		-122	4.1	CAGTTTGATTTTAAACACATTT
		-50	3.8	TATAGTTATCTCAATTTCATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: prpB
Ortholog function: Methylisocitrate lyase (EC 4.1.3.30)
Escherichia coli str. K-12 substr. MG1655	b0331	-153	3.7	AAACGTTAACTGAAACGCATAT
Salmonella typhimurium LT2	STM0368	-197	3.5	CAGGGTGATTCGTTTCATGAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu3542	-129	3.6	TAATTTAAAAACAATCATATAT

Position: -213 Score: 3.5 Sequence: AATTGTAATGAAATTGAGATAA Position: -208 Score: 3.4 Sequence: TAATGAAATTGAGATAACTATA Position: -136 Score: 4 Sequence: AAATGTGTTTAAAATCAAACTG Position: -99 Score: 4.3 Sequence: ATTTGTGACGGGAAAAACAATT Position: -40 Score: 3.4 Sequence: TATTGTCAATTGAAACATAAAT Locus tag: PROVRETT_00420
	PROVRETT_00420	-213	3.5	AATTGTAATGAAATTGAGATAA
		-208	3.4	TAATGAAATTGAGATAACTATA
		-136	4	AAATGTGTTTAAAATCAAACTG
		-99	4.3	ATTTGTGACGGGAAAAACAATT
		-40	3.4	TATTGTCAATTGAAACATAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: prpR
Ortholog function: Propionate catabolism operon regulatory protein PrpR
Escherichia coli str. K-12 substr. MG1655	b0330	-107	3.7	ATATGCGTTTCAGTTAACGTTT
Salmonella typhimurium LT2	STM0367	-89	3.5	TTTCATGAAACGAATCACCCTG
Citrobacter koseri ATCC BAA-895	CKO_02831	-179	3.4	AATTTTGTTTTTTCTTATAATT
Photorhabdus luminescens subsp. laumondii TTO1	plu3543	-225	4	ATATATGATTGTTTTTAAATTA

Position: -246 Score: 5.2 Sequence: AAACGTGATTTTTCTCACATAA Locus tag: PROVRETT_00421
	PROVRETT_00421	-246	5.2	AAACGTGATTTTTCTCACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ycaD
Ortholog function: Hypothetical MFS-type transporter protein ycaD
Escherichia coli str. K-12 substr. MG1655	b0898	-29	4.2	AAATTTGAACTTCCTCACGGTT
Salmonella typhimurium LT2	STM0968	-29	4.2	AAATTTGAACTTCCTCACGGTT
Citrobacter koseri ATCC BAA-895	CKO_02171	-29	4.2	AAATTTGAACTTCCTCACGGTT

Position: -240 Score: 4.2 Sequence: AAGTGTGAGCATTCTCAACTTA Locus tag: PROVRETT_00487
	PROVRETT_00487	-240	4.2	AAGTGTGAGCATTCTCAACTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fdrA
Ortholog function: membrane protein FdrA
Escherichia coli str. K-12 substr. MG1655	b0518	-213	3.8	TTATTTGATAATCCGCTCACTT
		-105	4.7	CTGTGTGATATTCATCACCTTA
Salmonella typhimurium LT2	STM0529	-120	4.4	TGATGTGACGTTAATCACTCTA
Proteus mirabilis HI4320	PMI2202	-191	4.2	AACTGTGACTTTAATCACTCTA

Position: -327 Score: 3.9 Sequence: TGATTTAAGCTATATCACCTTA Locus tag: PROVRETT_00609
	PROVRETT_00609	-327	3.9	TGATTTAAGCTATATCACCTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: metK
Ortholog function: S-adenosylmethionine synthetase (EC 2.5.1.6)
Escherichia coli str. K-12 substr. MG1655	b2942	-200	3.6	GAATGAGACACGATTCAAAAAA
Salmonella typhimurium LT2	STM3090	-200	3.9	CATTGCGACGGCCTTCAAAAAA
Citrobacter koseri ATCC BAA-895	CKO_04317	-199	3.5	CAACGAGAGTTGATTCAAAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03375	-199	4.3	AAATGCGACCGCCATCAAAAAA
Enterobacter sp. 638	Ent638_3346	-199	4.4	TAATGCGAGCGATATCAAAAAA
Proteus mirabilis HI4320	PMI2095	-275	3.5	CACTGTGATTCAGTTTTCACAG
Photorhabdus luminescens subsp. laumondii TTO1	plu3683	-205	3.3	GTTTATACTCGCAATCACATAA

Position: -83 Score: 3.8 Sequence: TTTTTTTAAACTATTCACAGTA Locus tag: PROVRETT_00654
	PROVRETT_00654	-83	3.8	TTTTTTTAAACTATTCACAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: coaE
Ortholog function: dephospho-CoA kinase
Erwinia amylovora ATCC 49946	EAM_0727	-75	4.4	TCGTGTGATCTGCGCCACATTA
Yersinia pestis KIM	y0757	-259	3.8	AAATGTGATCGGGCGTAAAACA
Serratia proteamaculans 568	Spro_0774	-158	3.8	CAGTGTGACCGCCCGCTCATTT
Edwardsiella tarda EIB202	ETAE_0650	-272	4	AAATGTGATCATACAAACGATT
Proteus mirabilis HI4320	PMI2052	-80	3.8	TCTTGTGATAAAAATCAGTTTA

Position: -112 Score: 3.6 Sequence: TTTTGCGAAGCTGCTCGAAGAA Position: -60 Score: 3.2 Sequence: AATCATAAATCGTTTCGCACTA Locus tag: PROVRETT_00658
	PROVRETT_00658	-112	3.6	TTTTGCGAAGCTGCTCGAAGAA
		-60	3.2	AATCATAAATCGTTTCGCACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ppdD
Ortholog function: predicted major pilin subunit
Escherichia coli str. K-12 substr. MG1655	b0108	-145	3.2	CTTCGTAACGCCTCGCAAATTT
Citrobacter koseri ATCC BAA-895	CKO_03268	-146	3.4	TTTTTCGAGCGGCCTCGCAAAC
Yersinia pestis KIM	y0761	-123	3.8	TTACGTTATTGCAATAACCTAA
Proteus mirabilis HI4320	PMI2049	-146	4.3	TAATGCGAACTTGCTCTCAATA

Position: -320 Score: 3.6 Sequence: TAATTTGATTTTAAATGCACTT Position: -181 Score: 3.1 Sequence: ATTCATGCTAAATTTTAAAAAA Position: -159 Score: 3.1 Sequence: AATTGTTAAGATTTGCAGGATT Position: -139 Score: 3.4 Sequence: TTTTATGATTTAGCGCAAGGTC Position: -96 Score: 3.5 Sequence: CTTTGTTACTTTATTAACCCAT Locus tag: PROVRETT_00661
	PROVRETT_00661	-320	3.6	TAATTTGATTTTAAATGCACTT
		-181	3.1	ATTCATGCTAAATTTTAAAAAA
		-159	3.1	AATTGTTAAGATTTGCAGGATT
		-139	3.4	TTTTATGATTTAGCGCAAGGTC
		-96	3.5	CTTTGTTACTTTATTAACCCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pdhR
Ortholog function: Transcriptional repressor for pyruvate dehydrogenase complex
Escherichia coli str. K-12 substr. MG1655	b0113	-156	3.7	AAACGTTATATATGTCAAGTTG
		-131	3.8	AAATGTGCACAGTTTCATGATT
Salmonella typhimurium LT2	STM0151	-157	3.5	AAACATGATTTCTGTAAAATTG
		-120	3.2	TTTACTGATTTCAATCAAAACC
		-79	3	CTTATTAAGCTTTCTCACGAAA
		-54	3.4	TAATGGGACAGGTTCCAGATAA
Citrobacter koseri ATCC BAA-895	CKO_03260	-180	3.2	ATTTGTGCATAGTTACATCTTT
		-157	3.1	AAACGTTATTTCTGTAATCTTG
		-148	3.3	TTCTGTAATCTTGTTAAAATGT
		-120	3.2	TTTACTGATTTCAATCAAAACC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00117	-155	3.2	AAATGTTATTTCTGTAAGGTTG
		-118	3.2	TTTACTGATTTCAATCAAAACC
Enterobacter sp. 638	Ent638_0659	-120	3.2	TTTACTGATTTCAATCAAAACC
		-77	3.1	TATTGTATTTTCTGGCGAAAAT
		-68	3	TTTAGCGATACGAATATGAAAT
Erwinia amylovora ATCC 49946	EAM_0746	-198	3.3	TAAAGCGATCGGATTTAACAAT
Yersinia pestis KIM	y0766	-151	4.2	AAATGTGCTGGGTTTCATGATT
		-139	3.3	TTTCATGATTTCGGTCAAGGTC
		-74	3.4	TTTTGAAATTGGTATTACCAAT
Serratia proteamaculans 568	Spro_4012	-132	3.1	AAATGTGCGGGTAACCTGATTT
		-56	3.4	TTTTGAAATTGGTATTACCAAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3790	-120	3.7	ATTGGTGATTTAGCTCAAGGTC
		-55	3.4	TTTTGAAATTGGTATTACCAAT
Edwardsiella tarda EIB202	ETAE_0658	-143	3.2	TTTCATGATTTACATCAATAGT
Proteus mirabilis HI4320	PMI2047	-218	3.1	TGTTTTTAATCTTTTCTAATAA
		-199	4.4	TAATGCGATCTAGTTATCAAAT
		-181	4.2	AAATTTGATGAATTTATCAAAT
		-158	3	ATTTGTTAAAATTTGCAGGTTT
		-138	3.9	TTTTATGATTTCGCTCAACAAC
		-95	3.1	CTTTGTTACTTTATTATCCATT
		-89	3.1	TACTTTATTATCCATTACATTA

Position: -34 Score: 3.1 Sequence: ACATATAAAATAGATAACAGAT Position: 15 Score: 3.1 Sequence: AAAAATGACGTGGATCCGATTG Locus tag: PROVRETT_00662
	PROVRETT_00662	-34	3.1	ACATATAAAATAGATAACAGAT
		15	3.1	AAAAATGACGTGGATCCGATTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: aceE
Ortholog function: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
Escherichia coli str. K-12 substr. MG1655	b0114	-156	3.7	AAACGTTATATATGTCAAGTTG
		-131	3.8	AAATGTGCACAGTTTCATGATT
Salmonella typhimurium LT2	STM0152	-157	3.5	AAACATGATTTCTGTAAAATTG
		-120	3.2	TTTACTGATTTCAATCAAAACC
		-79	3	CTTATTAAGCTTTCTCACGAAA
		-54	3.4	TAATGGGACAGGTTCCAGATAA
Citrobacter koseri ATCC BAA-895	CKO_03259	-180	3.2	ATTTGTGCATAGTTACATCTTT
		-157	3.1	AAACGTTATTTCTGTAATCTTG
		-148	3.3	TTCTGTAATCTTGTTAAAATGT
		-120	3.2	TTTACTGATTTCAATCAAAACC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00118	-155	3.2	AAATGTTATTTCTGTAAGGTTG
		-118	3.2	TTTACTGATTTCAATCAAAACC
Enterobacter sp. 638	Ent638_0660	-120	3.2	TTTACTGATTTCAATCAAAACC
		-77	3.1	TATTGTATTTTCTGGCGAAAAT
		-68	3	TTTAGCGATACGAATATGAAAT
Erwinia amylovora ATCC 49946	EAM_0747	-198	3.3	TAAAGCGATCGGATTTAACAAT
Yersinia pestis KIM	y0767	-151	4.2	AAATGTGCTGGGTTTCATGATT
		-139	3.3	TTTCATGATTTCGGTCAAGGTC
		-74	3.4	TTTTGAAATTGGTATTACCAAT
Serratia proteamaculans 568	Spro_4011	-132	3.1	AAATGTGCGGGTAACCTGATTT
		-56	3.4	TTTTGAAATTGGTATTACCAAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3789	-120	3.7	ATTGGTGATTTAGCTCAAGGTC
		-55	3.4	TTTTGAAATTGGTATTACCAAT
Edwardsiella tarda EIB202	ETAE_0659	-143	3.2	TTTCATGATTTACATCAATAGT
Proteus mirabilis HI4320	PMI2046	-218	3.1	TGTTTTTAATCTTTTCTAATAA
		-199	4.4	TAATGCGATCTAGTTATCAAAT
		-181	4.2	AAATTTGATGAATTTATCAAAT
		-158	3	ATTTGTTAAAATTTGCAGGTTT
		-138	3.9	TTTTATGATTTCGCTCAACAAC
		-95	3.1	CTTTGTTACTTTATTATCCATT
		-89	3.1	TACTTTATTATCCATTACATTA

Position: -129 Score: 3.4 Sequence: GGTTGGGAGTTACATCACGAAA Locus tag: PROVRETT_00664
	PROVRETT_00664	-129	3.4	GGTTGGGAGTTACATCACGAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: lpdA
Ortholog function: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
Escherichia coli str. K-12 substr. MG1655	b0116	-224	3.3	AATTGTTAACAATTTTGTAAAA
Salmonella typhimurium LT2	STM0154	-153	3.5	GTTTGTGAGGTTATTAGCGAAA
Citrobacter koseri ATCC BAA-895	CKO_03256	-95	3.3	AATTGTTAACAATTTTGTAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00120	-105	3.3	AATTGTTAACAATTTTGTAAAA
Yersinia pestis KIM	y0769	-253	3.3	ATTGGTGATCTTGTTATTACTG
Serratia proteamaculans 568	Spro_4009	-246	3.6	TATGGTGATGTAATGAAAAAAG
Proteus mirabilis HI4320	PMI2044	-133	3.4	GGTTGTGAGATCTGTCATGTTA
Photorhabdus luminescens subsp. laumondii TTO1	plu3621	-131	3.9	TGTTGCGAGTTCTGTCACGTTA

Position: -305 Score: 4.3 Sequence: TTTTGTGGCATAGATCAAACTT Locus tag: PROVRETT_00723
	PROVRETT_00723	-305	4.3	TTTTGTGGCATAGATCAAACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ptsH
Ortholog function: PTS system phosphocarrier protein
Escherichia coli str. K-12 substr. MG1655	b2415	-209	3.9	TTTTATGATTTGGTTCAATTCT
Salmonella typhimurium LT2	STM2431	-209	4.4	TTTTATGATTTGGTTCAAATCT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02762	-206	4	TTTTATGATTTGGTTCAAGTCT
Enterobacter sp. 638	Ent638_2943	-271	4.4	TTTTGTGGTCCACTTCAAACTT
		-144	4	TTTTATGATTTGGTTCAAGTCT
Serratia proteamaculans 568	Spro_3448	-149	3.6	TTTTTTGATCTGAAGTGCCAAA
Proteus mirabilis HI4320	PMI1828	-275	4.4	TTTTGTGGTAGAGATCAAACTT
		-115	3.6	TAACGTAACATGGCTTATATTA

Position: -136 Score: 4 Sequence: AAACGTGATCCCCTTCTTCTTT Position: -84 Score: 4.9 Sequence: TAATGTGACCTCCGTCTCATTT Locus tag: PROVRETT_00728
	PROVRETT_00728	-136	4	AAACGTGATCCCCTTCTTCTTT
		-84	4.9	TAATGTGACCTCCGTCTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nupC
Ortholog function: Nucleoside permease NupC
Proteus mirabilis HI4320	PMI1822	-132	3.9	AAGTGTGATCAACCTATCTTAT
		-80	4.4	TATTGTGACAATAATCACATCG
		-58	3.8	TAATGTTACGCGTTACATAAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu1399	-213	3.8	TAATGTGATATCTATACTCTAT

Position: -301 Score: 5 Sequence: AATTGTGATGGTTGTCACCAAT Position: -257 Score: 4.9 Sequence: ATTTATGACTCAGATCACAAAA Position: -185 Score: 4.5 Sequence: TTTTGTGATCTTTGTCAATATA Locus tag: PROVRETT_00748
	PROVRETT_00748	-301	5	AATTGTGATGGTTGTCACCAAT
		-257	4.9	ATTTATGACTCAGATCACAAAA
		-185	4.5	TTTTGTGATCTTTGTCAATATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtlA
Ortholog function: PTS system, mannitol-specific IIC component (EC 2.7.1.69) / PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIA component (EC 2.7.1.69)
Escherichia coli str. K-12 substr. MG1655	b3599	-206	4.5	TTTTGTGATGAACGTCACGTCA
		-162	5.4	TTATGTGATTGATATCACACAA
		-113	3.3	TTCAGTGCCAGATTTCGCAGTA
Salmonella typhimurium LT2	STM3685	-207	4.8	CTTTGTGATCAATATCACATCA
		-163	5.4	TTATGTGACGCAAATCACATAA
Citrobacter koseri ATCC BAA-895	CKO_05054	-203	5.2	TTTTGTGATCAATATCACATCA
		-159	5	TCATGTGATCCAAATCACACAA
		-110	3.4	TTCAGTGCCAGATTTCGCACTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03942	-208	4.9	TTTTGTGATCATCATCACTAAA
		-164	5.2	TCATGTGATCCAAATCACATAA
		-115	3.4	TTCAGTGCCAGATTTCGCACTA
Enterobacter sp. 638	Ent638_0136	-224	3.4	TATTTTTTTCATACTCTCATTT
		-205	4.8	TTTTGTGATGGCGATCACCTCA
		-161	5.1	TTGCGTGATGCAGATCACACAA
Erwinia amylovora ATCC 49946	EAM_3416	-229	3.3	CATTGCGAATATCTTTACACTT
		-210	3.9	CTTCGTGACTCATGTCACTAAA
		-166	4.8	TTAAGTGACCCGCATCACACTT
		-95	3.2	CGTTTTGATCGTGATCCCTCAA
		-34	3.5	ACATGAGATTTGCATCATTAAT
Yersinia pestis KIM	y4087	-223	4.6	AGATGTGATCTTAATCAACAAA
		-179	4.5	TTGTGTGACTTTCGTCACGAAA
Serratia proteamaculans 568	Spro_0072	-195	5.2	AAATGTGATGTATATCACTATA
		-151	4.5	GTTGGTGATCTGCATCACAAAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0087	-230	5.1	TTTTGTGAAGTAAATCACCTAT
		-186	4.5	TTGTGTGATTTTTGTCACGTTG

Position: -189 Score: 4.5 Sequence: AATTTTGATTTAAATCATAATG Position: -137 Score: 4 Sequence: ATAATTGATAAATATCAAAGAA Locus tag: PROVRETT_00766
	PROVRETT_00766	-189	4.5	AATTTTGATTTAAATCATAATG
		-137	4	ATAATTGATAAATATCAAAGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: grcA
Ortholog function: Autonomous glycyl radical cofactor
Serratia proteamaculans 568	Spro_3682	-140	3.8	AAAATTGACTTTAATCAAAGAA

Position: -225 Score: 3.7 Sequence: TAATGAGAAGGGAATAGCAAAT Locus tag: PROVRETT_00816
	PROVRETT_00816	-225	3.7	TAATGAGAAGGGAATAGCAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glyA
Ortholog function: serine hydroxymethyltransferase
Escherichia coli str. K-12 substr. MG1655	b2551	-229	3.8	GAATGTGATGAAGTGAAAAATT
Proteus mirabilis HI4320	PMI1867	-210	3.8	TAGCGAGATGTGCCTCAAAAAG
Photorhabdus luminescens subsp. laumondii TTO1	plu3291	-178	3.8	TAGCGTAATTTTCATTACACTA

Position: -64 Score: 4.4 Sequence: CCTTGTGATGTCTATCGCAAAA Locus tag: PROVRETT_00911
	PROVRETT_00911	-64	4.4	CCTTGTGATGTCTATCGCAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ychH
Ortholog function: membrane protein
Escherichia coli str. K-12 substr. MG1655	b1205	-105	4.5	AATTGTGATCACGCCCGCACAT
Salmonella typhimurium LT2	STM1782	-105	4.4	ATTTGTGATCGCACCCGCACTT
Citrobacter koseri ATCC BAA-895	CKO_01260	-104	4.1	AATTGTGATCGCCCACGCACTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02241	-100	4.1	TAATGTGATCGTGGACGCACTC
Enterobacter sp. 638	Ent638_2343	-119	3.7	TGTTGTGACGAGAGTCATTAAT
		-101	4	TAATGTGATCATTCACGCAACT
Erwinia amylovora ATCC 49946	EAM_1581	-97	3.9	AAATGTGATCGCTGACTCATCA
Yersinia pestis KIM	y2296	-145	3.9	AGTTGTGATCGCTACCGCAACA
Serratia proteamaculans 568	Spro_1985	-117	4.2	ATTTGTGATCGCCTACGCAATC
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2185	-275	3.6	TAGCGTGATTATGAGAACGCTA
		-117	3.8	ATCTGTGATCCCTCCCGCAATC
Photorhabdus luminescens subsp. laumondii TTO1	plu2065	-189	4.1	AGTTGTGATCGTGTCCGCAATG

Position: -58 Score: 5.2 Sequence: TATTGTGATCTTAATCACTTAT Locus tag: PROVRETT_01067
	PROVRETT_01067	-58	5.2	TATTGTGATCTTAATCACTTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: aroH
Ortholog function: phospho-2-dehydro-3-deoxyheptonate aldolase
Escherichia coli str. K-12 substr. MG1655	b1704	-106	4.3	AGGTGTGACACACCTCGCACTT
		-64	4	TATCGTGATGCGCATCACTTCC
Salmonella typhimurium LT2	STM1347	-106	4.3	AGGTGTGACACGCCTCGCACTT
		-64	4	TATCGTGATGCCCATCACTTCC
Citrobacter koseri ATCC BAA-895	CKO_01728	-115	4.3	AGGTGTGAAACGCCTCGCATTT
		-64	4.3	TATTGTGATGCCCATCACTTCC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02162	-63	4	TATCGTGATGCGCATCACTTCC
Enterobacter sp. 638	Ent638_1743	-126	3.6	AGTTATGATCGCTTTCACTCTC
		-62	3.6	TAAGGTGATGCCCATCACTTCC
Yersinia pestis KIM	y1928	-64	4.3	TATTGTGATCGCCATCACTTCC
Serratia proteamaculans 568	Spro_2172	-135	3.9	TTTTGTGCTTTTTTTAGCGATT
		-64	4.3	TATTGTGATCGCCATCACTTCC
Edwardsiella tarda EIB202	ETAE_1792	-63	4	TATCGTGATCCCCATCACTTCC
Proteus mirabilis HI4320	PMI1423	-55	3.9	TATTGTGATCTTAATCACTGGG
Photorhabdus luminescens subsp. laumondii TTO1	plu2630	-62	3.8	TATTGTAATTTCCATTATCTAT

Position: -302 Score: 5.1 Sequence: AATCGTTATGTGGATCACATTT Locus tag: PROVRETT_01172
	PROVRETT_01172	-302	5.1	AATCGTTATGTGGATCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cstA2
Ortholog function: Carbon starvation protein A paralog
Escherichia coli str. K-12 substr. MG1655	b4354	-231	5.7	ATATGTGATATGAATCACATAT
Salmonella typhimurium LT2	STM4532	-229	5.4	TATCGTGATCTCAATCACATAA
Citrobacter koseri ATCC BAA-895	CKO_03443	-228	5.2	ATTAGTGATCTCAATCACATAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04776	-231	5.2	TATTGTGAGCTTAATCACACAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1187	-57	3.7	TATTTTTCTACAGCTAACAAAA
Proteus mirabilis HI4320	PMI0142	-279	3.6	ATTTTTTATGTAATTAATAGTT
		-234	5.2	ATTTGTTATCTCGATCACAAAA

Position: -16 Score: 3.7 Sequence: AAGTGTGAGGGCAATAATGAAA Locus tag: PROVRETT_01174
	PROVRETT_01174	-16	3.7	AAGTGTGAGGGCAATAATGAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yjiA
Ortholog function: ATP-binding protein
Escherichia coli str. K-12 substr. MG1655	b4352	-231	5.7	ATATGTGATATGAATCACATAT
Salmonella typhimurium LT2	STM4530	-229	5.4	TATCGTGATCTCAATCACATAA
Citrobacter koseri ATCC BAA-895	CKO_03445	-228	5.2	ATTAGTGATCTCAATCACATAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04774	-231	5.2	TATTGTGAGCTTAATCACACAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1189	-57	3.7	TATTTTTCTACAGCTAACAAAA
Proteus mirabilis HI4320	PMI0144	-279	3.6	ATTTTTTATGTAATTAATAGTT
		-234	5.2	ATTTGTTATCTCGATCACAAAA

Position: -163 Score: 4.6 Sequence: TTTTGTGACTAAGCTCAAAGTT Locus tag: PROVRETT_01176
	PROVRETT_01176	-163	4.6	TTTTGTGACTAAGCTCAAAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yhaM
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655	b4470	-228	4.6	TTTTGTGATCTGCCGCAAATAG
Salmonella typhimurium LT2	STM3238	-230	4.5	TGTTGTGATACGCGTCAAATAG
Citrobacter koseri ATCC BAA-895	CKO_04510	-180	4.7	TGTTGTGATCTGCTTCAAGAAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04419	-230	3.6	CGCTGTGAGCAGATTAACAAAA

Position: -124 Score: 4.6 Sequence: AAATGAGATCGCCATCAAATAA Position: -48 Score: 3.8 Sequence: TTCAGTTATATTAATAACAATT Locus tag: PROVRETT_01247
	PROVRETT_01247	-124	4.6	AAATGAGATCGCCATCAAATAA
		-48	3.8	TTCAGTTATATTAATAACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fsr
Ortholog function: fosmidomycin resistance protein
Escherichia coli str. K-12 substr. MG1655	b0479	-65	3.7	TAGTCTGGTAATAATCACAAAT
Salmonella typhimurium LT2	STM0493	-100	3.8	AATTGAGACTTCCTTCAAACAC
Citrobacter koseri ATCC BAA-895	CKO_02670	-102	3.8	AATTGAGACTTCCTTCAAACAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00460	-197	3.8	AATTGCGACTTCCTTCAAACCT
Enterobacter sp. 638	Ent638_0958	-92	4	AATTGCGACTTTCCTCAAATCT
Serratia proteamaculans 568	Spro_1146	-100	4.7	TTTTGCGATGTGCGTCAAATTA

Position: -232 Score: 3.8 Sequence: AATTGTTATTAATATAACTGAA Position: -156 Score: 4.7 Sequence: TTATTTGATGGCGATCTCATTT Locus tag: PROVRETT_01248
	PROVRETT_01248	-232	3.8	AATTGTTATTAATATAACTGAA
		-156	4.7	TTATTTGATGGCGATCTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ushA
Ortholog function: UDP-sugar hydrolase (EC 3.6.1.45); 5'-nucleotidase (EC 3.1.3.5)
Escherichia coli str. K-12 substr. MG1655	b0480	-174	4	ATTTGTGATTATTACCAGACTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00461	-125	3.9	AATTATTATCCAACTAACATAC
		-94	3.7	AGGTTTGAAGGAAGTCGCAATT
Enterobacter sp. 638	Ent638_0959	-95	3.9	AGATTTGAGGAAAGTCGCAATT
Serratia proteamaculans 568	Spro_1147	-103	4.6	TAATTTGACGCACATCGCAAAA
Edwardsiella tarda EIB202	ETAE_1034	-139	4.4	TTAGGTGAGTCACGTCACAATA
Proteus mirabilis HI4320	PMI2177	-111	3.7	ATATATAACCTACGTCATAAAA

Position: -162 Score: 4.2 Sequence: AAATTTAACTTAGATCTCATTT Locus tag: PROVRETT_01273
	PROVRETT_01273	-162	4.2	AAATTTAACTTAGATCTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fruB
Ortholog function: PTS system, fructose-specific IIA/FPr component
Escherichia coli str. K-12 substr. MG1655	b2169	-178	4.3	AATTGTGCAGCACATCAAACTT
Salmonella typhimurium LT2	STM2206	-177	4.6	AAATGTGCTTCACCTCAAAAAA
Citrobacter koseri ATCC BAA-895	CKO_00613	-50	4.1	AAGTGTGCTTTATCTCTAAATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02600	-177	3.5	AAGTGTGCAGTACCTCTAAGTT
Enterobacter sp. 638	Ent638_2763	-178	4.3	AAATGTGCTGCACTTCTAAATT
Erwinia amylovora ATCC 49946	EAM_2223	-179	4.4	AAATGTGCTGGCTGTCAAAAAT
Yersinia pestis KIM	y2887	-178	4.1	AAATGTGCGGAATGTCAAAAAT
Serratia proteamaculans 568	Spro_3230	-177	4	AAGTGTGCGTGAGGTCAAAAAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2729	-180	4.1	AAATGTGCGTGATGTCAAAATT
Edwardsiella tarda EIB202	ETAE_2303	-199	4.1	AAATGTGCTGAAGGTCTAAAAT
Photorhabdus luminescens subsp. laumondii TTO1	plu1992	-180	4.7	AAATGTGAGTAATCTCAAAAAA

Position: -178 Score: 3.4 Sequence: AAACGTGACTTGACGCAGTAAT Locus tag: PROVRETT_01293
	PROVRETT_01293	-178	3.4	AAACGTGACTTGACGCAGTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hupA
Ortholog function: DNA-binding protein HU-alpha (HU-2)
Escherichia coli str. K-12 substr. MG1655	b4000	-179	3.4	AAACGTGATTTAACGCCTGATT
Citrobacter koseri ATCC BAA-895	CKO_02986	-179	3.4	AAACGTGATTTAACGCCTGATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04382	-179	3.4	AAACGTGATTTACCGCCTGAAT
Enterobacter sp. 638	Ent638_0213	-179	3.5	AAACGTGATTTAACGCCTGTTT
Yersinia pestis KIM	y0499	-181	3.4	AAACGTGATTTAACGCCTGATT
Serratia proteamaculans 568	Spro_0290	-181	3.4	AAACGTGATTTAACGCCTCATT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0238	-197	3.3	AAACGTGATTTAAGGCCTGAAA
Edwardsiella tarda EIB202	ETAE_0183	-182	3.3	AAACGTGATTTAACACCTGATT
Proteus mirabilis HI4320	PMI2771	-183	3.7	AAACGTGATTTAGTGCTTGAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu0492	-179	3.4	AAACGTGATTTAATGCTTTAAA

Position: -182 Score: 3.5 Sequence: TAATATGATCAATTAAACCGTT Position: -159 Score: 3.5 Sequence: AGTTTTGATCTTAATCCTATCA Locus tag: PROVRETT_01370
	PROVRETT_01370	-182	3.5	TAATATGATCAATTAAACCGTT
		-159	3.5	AGTTTTGATCTTAATCCTATCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yhfA
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655	b3356	-187	4.2	TAATGTGACGTCCTTTGCATAC
Salmonella typhimurium LT2	STM3465	-188	3.9	TAATGTGATGTCCTCTGCATAC
Citrobacter koseri ATCC BAA-895	CKO_04775	-187	3.3	GAATGTGATGTCCTCTGCATAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03742	-188	3.5	TAATGTGAACTCCTCTGCATAC
Serratia proteamaculans 568	Spro_4579	-280	3.3	GGTTTTGAGGCGTGTCATAAAT

Position: -249 Score: 3.4 Sequence: TTATTGGATATGCTACAAACAA Position: -219 Score: 3.2 Sequence: TGATAGGATTAAGATCAAAACT Position: -179 Score: 3.1 Sequence: TATTATAGTGTTGATATCAATT Position: -105 Score: 3 Sequence: TAAAGGTATATAAGGCAAATTA Locus tag: PROVRETT_01371
	PROVRETT_01371	-249	3.4	TTATTGGATATGCTACAAACAA
		-219	3.2	TGATAGGATTAAGATCAAAACT
		-179	3.1	TATTATAGTGTTGATATCAATT
		-105	3	TAAAGGTATATAAGGCAAATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: crp
Ortholog function: cyclic AMP receptor protein
Escherichia coli str. K-12 substr. MG1655	b3357	-154	3.3	TACATTGATGTACTGCATGTAT
		-136	3.3	GTATGCAAAGGACGTCACATTA
Salmonella typhimurium LT2	STM3466	-159	3.1	TACATTGACGTACTGCATGTAT
Citrobacter koseri ATCC BAA-895	CKO_04777	-160	3.1	TACATTGACGTACTGCATGTAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03743	-158	3.3	TACATTGATGTACTGCATGTAT
Enterobacter sp. 638	Ent638_3784	-128	2.9	AAACATTACAGGCTGCAAACAT
Yersinia pestis KIM	y3956	-309	3	AATTTAGACTACCCTTTCATTT
Serratia proteamaculans 568	Spro_4580	-121	3.5	ATTTATGACACGCCTCAAAACC
Proteus mirabilis HI4320	PMI2820	-135	3.3	TATTATAATCTATTCCTTATTA

Position: -37 Score: 3.7 Sequence: ATTCATGATCCACATCACCTCC Locus tag: PROVRETT_01480
	PROVRETT_01480	-37	3.7	ATTCATGATCCACATCACCTCC
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpG
Ortholog function: predicted intramembrane serine protease
Escherichia coli str. K-12 substr. MG1655	b3424	-95	4.7	TAGAGTGATATGTATAACATTA
Salmonella typhimurium LT2	STM3524	-104	4.7	TAGAGTGATATGTATAACATTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03790	-107	4.3	TGAAGTGATGGGTGTAACATAT
Enterobacter sp. 638	Ent638_3833	-257	3.8	ATGTTCGATATCGCTCATAATA
		-196	4.6	TTGAGTGATAGAGATAACATAA
Erwinia amylovora ATCC 49946	EAM_3263	-134	3.9	ATGCGTGATGCCGATAACGTCT
Photorhabdus luminescens subsp. laumondii TTO1	plu0196	-102	3.6	TAACGTATTACTGATAACAAAT

Position: -70 Score: 3.6 Sequence: TATTTTGACTACAATCAAATGA Locus tag: PROVRETT_01483
	PROVRETT_01483	-70	3.6	TATTTTGACTACAATCAAATGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpD
Ortholog function: glycerol-3-phosphate dehydrogenase
Escherichia coli str. K-12 substr. MG1655	b3426	-116	4.4	TAATGTTATACATATCACTCTA
Salmonella typhimurium LT2	STM3526	-116	4.4	TAATGTTATACATATCACTCTA
Citrobacter koseri ATCC BAA-895	CKO_04845	-116	4.5	TAATGTTATATGTATCACTCTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03792	-119	3.7	ATATGTTACACCCATCACTTCA
		-58	3.7	TATAGTGAGCGATATCGAGCAT
Enterobacter sp. 638	Ent638_3835	-116	4.4	TTATGTTATCTCTATCACTCAA
		-55	4	TATTATGAGCGATATCGAACAT
Erwinia amylovora ATCC 49946	EAM_3265	-124	4	AGACGTTATCGGCATCACGCAT
Yersinia pestis KIM	y3891	-129	4.4	AAATGTTACCTCCATCACGCAT
Serratia proteamaculans 568	Spro_4642	-129	3.6	AACTGTTACCTCTATCACGCCT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4141	-144	4.3	TAATGTGACAACTATCATCATA
		-124	4.4	TATTGTTAGCTTCATCACGCAT
Edwardsiella tarda EIB202	ETAE_3312	-124	4.3	TTGTGTTATCCGCATCGCGTAA
Proteus mirabilis HI4320	PMI2930	-129	4.4	AATTGTTATTTATATCACGCAG

Position: -232 Score: 4.7 Sequence: TTTTGCGATGCACTTCACAATC Locus tag: PROVRETT_01495
	PROVRETT_01495	-232	4.7	TTTTGCGATGCACTTCACAATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: paaN
Ortholog function: Phenylacetic acid degradation protein PaaN, ring-opening aldehyde dehydrogenase (EC 1.2.1.3)
Escherichia coli str. K-12 substr. MG1655	b1387	-261	3.6	TTTCGTGAATTAATTAAAAACA
		-175	3.7	AACTGTGACGGATTTCGCACCC
		-109	3.8	AGTTGCTATACAGATCGCATAG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01468	-246	3.3	TTATGTGAATCACTTTGTTTAT
		-177	4.4	TTTTGTGATAATCTCCGCAAAA
Serratia proteamaculans 568	Spro_3071	-277	3.8	AAATGTGAATCACGTTAACTAA
		-206	4	TTTTGCGATGTTACTCACAGGT

Position: -125 Score: 4.4 Sequence: GATTGTGAAGTGCATCGCAAAA Locus tag: PROVRETT_01496
	PROVRETT_01496	-125	4.4	GATTGTGAAGTGCATCGCAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: paaA
Ortholog function: predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation
Escherichia coli str. K-12 substr. MG1655	b1388	-97	4.3	ATTTGTGATTTTACTTAACTAT
		-76	3.6	TTGTGTAACTTTCATAAAACAA
		-45	3.6	TGTTTTTAATTAATTCACGAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01469	-197	3.8	CATTGTGATCGCGATGGCGTTA
		-131	3.7	TTTTGCGGAGATTATCACAAAA
Serratia proteamaculans 568	Spro_3072	-134	3.8	ACCTGTGAGTAACATCGCAAAA
		-63	3.8	TTAGTTAACGTGATTCACATTT

Position: -43 Score: 3.8 Sequence: TCACGTGAACTGGTGAACATAA Locus tag: PROVRETT_01506
	PROVRETT_01506	-43	3.8	TCACGTGAACTGGTGAACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: paaK
Ortholog function: phenylacetyl-CoA ligase
Escherichia coli str. K-12 substr. MG1655	b1398	-97	4.3	ATTTGTGATTTTACTTAACTAT
		-76	3.6	TTGTGTAACTTTCATAAAACAA
		-45	3.6	TGTTTTTAATTAATTCACGAAA
Serratia proteamaculans 568	Spro_3082	-134	3.8	ACCTGTGAGTAACATCGCAAAA
		-63	3.8	TTAGTTAACGTGATTCACATTT

Position: -109 Score: 4 Sequence: AGATGTGATCAAAGCAACACTT Locus tag: PROVRETT_01585
	PROVRETT_01585	-109	4	AGATGTGATCAAAGCAACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: uspA3
Ortholog function: Universal stress protein A
Enterobacter sp. 638	Ent638_3909	-195	3.8	AAAGTCGATCGGGTTCACGTTT
Yersinia pestis KIM	y3859	-151	3.6	ATTAGTGATCATTGTCAAAACC
Serratia proteamaculans 568	Spro_4691	-123	4	CAGTGTGATCGCCTCAACATAT
Proteus mirabilis HI4320	PMI3009	-290	3.6	AGTTGTTCGCTTTTTCAAAAAA
		-113	3.8	AGTTGTGATCAAGGCAACATCT

Position: -132 Score: 4.3 Sequence: TTACGTGCTCTAAGTCTCATTA Position: -46 Score: 3.8 Sequence: AATTATGATCATCCGCAGATTA Locus tag: PROVRETT_01591
	PROVRETT_01591	-132	4.3	TTACGTGCTCTAAGTCTCATTA
		-46	3.8	AATTATGATCATCCGCAGATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pck
Ortholog function: Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
Escherichia coli str. K-12 substr. MG1655	b3403	-240	4.2	GAATGCGATTCCACTCACAATA
		-137	4	TTTCGTGACAGGAATCACGGAG
Salmonella typhimurium LT2	STM3500	-241	4	GAATGCGATTACAGTCACATTA
		-107	3.9	AATCGTGATTTTGTCCAGATAC
Citrobacter koseri ATCC BAA-895	CKO_04825	-107	3.9	AATCGTGATTTTGTCCAGATAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03773	-242	3.7	GAAAGCGATTACATTCACATTT
		-138	3.7	CTTCGTGACAGGAGTCACCGTT
Enterobacter sp. 638	Ent638_3816	-241	4.1	GTATGCGATTACATTCACATTA
Yersinia pestis KIM	y3918	-130	4.2	ATTCGTGTTCCATCTCTCATAA
		-80	3.8	ATATTTGATAGCTATCGCTGTT
Serratia proteamaculans 568	Spro_4617	-80	4.1	ATATTTGATACCTATCGCGGTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4106	-81	4	TTTTATGATTGCTATCGCGGTT
Edwardsiella tarda EIB202	ETAE_3277	-82	3.9	TTTTTTGATGACTATCTCGGTT
Proteus mirabilis HI4320	PMI3015	-131	4	ATTTGTGCATTAGTTCTCGTTA
Photorhabdus luminescens subsp. laumondii TTO1	plu0100	-86	3.8	TTTTTTGATAACTATCGCTGTT

Position: -220 Score: 4.3 Sequence: AACTATGACCTATATCAAAATA Locus tag: PROVRETT_01594
	PROVRETT_01594	-220	4.3	AACTATGACCTATATCAAAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: igaA
Ortholog function: IgaA: a membrane protein that prevents overactivation of the Rcs regulatory system
Escherichia coli str. K-12 substr. MG1655	b3398	-288	3.6	TTGTGCGATATCGGACACGCTT
		-123	3.8	TACTGTGATGTGCTTAATGATG
Salmonella typhimurium LT2	STM3495	-238	3.6	TTATGTAACGTAATAAAAATTA
Citrobacter koseri ATCC BAA-895	CKO_04821	-290	3.9	TTGTGCGATATACAGCACGGTT
		-238	3.7	TTATGTAACGTAGTAAAAATTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03769	-282	3.8	TTGTGCGATACGCAACACGCTT
Enterobacter sp. 638	Ent638_3811	-287	3.7	TTGTGCGATATGACGCACGGTT
Yersinia pestis KIM	y3922	-186	3.7	TATTGTGACTGCGTTAGCTTTG

Position: -127 Score: 4.5 Sequence: TATTTTGATATAGGTCATAGTT Locus tag: PROVRETT_01595
	PROVRETT_01595	-127	4.5	TATTTTGATATAGGTCATAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nudE
Ortholog function: ADP compounds hydrolase NudE (EC 3.6.1.-)
Escherichia coli str. K-12 substr. MG1655	b3397	-53	3.7	AAGCGTGTCCGATATCGCACAA
Citrobacter koseri ATCC BAA-895	CKO_04820	-54	4.1	AACCGTGCTGTATATCGCACAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03768	-54	4	AAGCGTGTTGCGTATCGCACAA
Enterobacter sp. 638	Ent638_3810	-55	3.6	AACCGTGCGTCATATCGCACAA
Yersinia pestis KIM	y3923	-247	4.5	CAATGTGATCAAGTTCTAATAT
Serratia proteamaculans 568	Spro_4612	-135	4.4	CAATGTGATCAAGATCGGATTT
Edwardsiella tarda EIB202	ETAE_3268	-116	3.6	AAATATGAGCATCTGCGCACAA

Position: -194 Score: 3.9 Sequence: TTTTGCGCGGAAGATCACGTAT Position: -126 Score: 3.7 Sequence: AATTGATATATAAATCTAAAAA Locus tag: PROVRETT_01616
	PROVRETT_01616	-194	3.9	TTTTGCGCGGAAGATCACGTAT
		-126	3.7	AATTGATATATAAATCTAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sodA
Ortholog function: Manganese superoxide dismutase (EC 1.15.1.1)
Escherichia coli str. K-12 substr. MG1655	b3908	-161	3.8	GTGGGTGATTTGCTTCACATCT
Citrobacter koseri ATCC BAA-895	CKO_03093	-150	4.4	ACGGGTGATTTGGCTCACATAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04217	-150	4	TTAGTTGTTCTACATCACAAAA
Enterobacter sp. 638	Ent638_4063	-160	3.6	CCGCGTGAGCAGACTCACAATT
Proteus mirabilis HI4320	PMI3036	-292	3.7	TTTTGCGCATAAGATCACGAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu0075	-297	3.7	TTTTGCGCGGAAGATCACGCAA

Position: -98 Score: 4.4 Sequence: ATACGTGATCTTCCGCGCAAAA Position: -60 Score: 4.1 Sequence: AATCGTGCTTTAGTTAACCATT Locus tag: PROVRETT_01617
	PROVRETT_01617	-98	4.4	ATACGTGATCTTCCGCGCAAAA
		-60	4.1	AATCGTGCTTTAGTTAACCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: acs
Ortholog function: acetyl-coenzyme A synthetase
Escherichia coli str. K-12 substr. MG1655	b4069	-100	4.1	TTGCGTGATCTGTCGCCCAAAT
Salmonella typhimurium LT2	STM4275	-100	4.1	TTGCGTGATCTGTCGCCCAAAT
Citrobacter koseri ATCC BAA-895	CKO_03816	-101	4.3	TTGCGTGATCTGCCGCGCAAAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04478	-101	3.9	TTGCGTGATCTGCCCCCCAATT
Enterobacter sp. 638	Ent638_0276	-101	4.1	TTGCGTGATCTGTCGCCCAAAT
Yersinia pestis KIM	y0510	-97	4.2	ATACGTGATCTGCCGCCCAAAA
Serratia proteamaculans 568	Spro_0297	-97	4	TTGCGTGATCTGCCGCCCAAAA
Proteus mirabilis HI4320	PMI3037	-97	4.5	TTTCGTGATCTTATGCGCAAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu0074	-98	4.2	TTGCGTGATCTTCCGCGCAAAA

Position: -145 Score: 4.5 Sequence: TTTAGTGATGTAACACACACTT Locus tag: PROVRETT_01783
	PROVRETT_01783	-145	4.5	TTTAGTGATGTAACACACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpF
Ortholog function: facilitator for glycerol uptake
Proteus mirabilis HI4320	PMI3211	-132	4	TTTCATGATGGGACACACAAAA

Position: -156 Score: 4 Sequence: ATTTGCGAAGTAGCTCTAAAAA Position: -138 Score: 4.3 Sequence: AAAAATGACGCAAGTCACATTT Locus tag: PROVRETT_01790
	PROVRETT_01790	-156	4	ATTTGCGAAGTAGCTCTAAAAA
		-138	4.3	AAAAATGACGCAAGTCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cytR
Ortholog function: transcriptional repressor
Escherichia coli str. K-12 substr. MG1655	b3934	-128	3.9	AAATTCAATATTCATCACACTT
Citrobacter koseri ATCC BAA-895	CKO_03060	-129	3.8	AAATTAAATATCCATCACACTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04229	-162	3.6	TCTTGCGAGCCGGATCGAAAAA
		-143	3.9	AAATTTAACAAGCATCACGTTT
Yersinia pestis KIM	y0297	-177	3.7	TTCTGCGAGCCAGTTCGAAAAA
		-135	3.6	TTATGCAAATTAGGTAACAAAT
Edwardsiella tarda EIB202	ETAE_3434	-258	4.2	AAGTGCGATCGGGATCGAAAAA
		-175	3.6	ATATGTGATCATATACTCATCG
Proteus mirabilis HI4320	PMI3218	-207	4.3	TTTTGCGAACTACCTCATAAAA
		-189	3.9	AAAAACGATTGGTATCACACTT
Photorhabdus luminescens subsp. laumondii TTO1	plu4760	-213	4.2	ATTTGCGAGCCATATCGAATAA
		-195	4.6	ATAAATGATTTATATCACACTT

Position: -134 Score: 3.7 Sequence: TTTAGCGGCCTGCATCACAAAA Locus tag: PROVRETT_01796
	PROVRETT_01796	-134	3.7	TTTAGCGGCCTGCATCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fsaB
Ortholog function: fructose 6-phosphate aldolase 2
Enterobacter sp. 638	Ent638_4030	-214	3.7	ACGCATGATCCCCATCACATTC

Position: -237 Score: 3.7 Sequence: TTGAGTGATTTTTAGCATCATT Position: -217 Score: 3.6 Sequence: TTTTATGAACATAATCAGCTAT Position: -133 Score: 3.7 Sequence: AATTATGACGGTTTTCATTAAA Locus tag: PROVRETT_01799
	PROVRETT_01799	-237	3.7	TTGAGTGATTTTTAGCATCATT
		-217	3.6	TTTTATGAACATAATCAGCTAT
		-133	3.7	AATTATGACGGTTTTCATTAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gadB
Ortholog function: Glutamate decarboxylase (EC 4.1.1.15)
Escherichia coli str. K-12 substr. MG1655	b1493	-297	3.6	TTTTATAAATGCGTTCAAAATA
		-158	3.3	TATTGTATTGTTTTTCAATGAA
		-128	3.3	ATTCGCGTAATATCTCACGATA
Edwardsiella tarda EIB202	ETAE_2868	-186	3.7	TAGCGTTATTTTTCTCATCATT

Position: -65 Score: 3.8 Sequence: ATGTGTATTTTTATTCAAATAA Locus tag: PROVRETT_01801
	PROVRETT_01801	-65	3.8	ATGTGTATTTTTATTCAAATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: argE
Ortholog function: acetylornithine deacetylase
Escherichia coli str. K-12 substr. MG1655	b3957	-66	3.7	TAGTGTATTTTTATTCATAAAT
Salmonella typhimurium LT2	STM4120	-66	3.9	TAATGTATTTTTATTCATAATT
Citrobacter koseri ATCC BAA-895	CKO_03037	-27	4.3	TAATGTATTTTTATTCACAAAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04246	-27	4	TATTGTATTTTTATTCAAAATA
Enterobacter sp. 638	Ent638_4029	-66	4.2	TAGTGTATTTTTATTCACATTT
Erwinia amylovora ATCC 49946	EAM_0137	-66	3.8	TATTGTATTTTTATTCACTATT
Yersinia pestis KIM	y0309	-223	3.6	TATTTTTATTTATGTCAATAAA
Serratia proteamaculans 568	Spro_4782	-71	4.3	TATTGTATTTTTATTCACAATA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0191	-65	4	TATTGTATTTTTATTCAAAATA
Edwardsiella tarda EIB202	ETAE_3483	-65	3.9	TATTGTATTTTTATTCATAATT
Proteus mirabilis HI4320	PMI3236	-65	3.9	TAATGTATTTTTATTCAAAAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu4745	-65	3.9	TAATGTATTTTTATTCAAAAAA

Position: -59 Score: 3.4 Sequence: TTATTTGAATAAAAATACACAT Locus tag: PROVRETT_01802
	PROVRETT_01802	-59	3.4	TTATTTGAATAAAAATACACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: argC
Ortholog function: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Salmonella typhimurium LT2	STM4121	-44	3.5	AATTATGAATAAAAATACATTA
Citrobacter koseri ATCC BAA-895	CKO_03036	-110	4	ATTTGTGAATAAAAATACATTA
Enterobacter sp. 638	Ent638_4028	-44	3.8	AAATGTGAATAAAAATACACTA
Yersinia pestis KIM	y0310	-43	3.7	TTTATTGACATAAATAAAAATA
Serratia proteamaculans 568	Spro_4781	-167	4	TATTGTGAATAAAAATACAATA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0192	-159	3.5	TATTTTGAATAAAAATACAATA
Edwardsiella tarda EIB202	ETAE_3482	-160	3.4	AATTATGAATAAAAATACAATA
Proteus mirabilis HI4320	PMI3237	-57	3.6	TTTTTTGAATAAAAATACATTA
Photorhabdus luminescens subsp. laumondii TTO1	plu4744	-59	3.6	TTTTTTGAATAAAAATACATTA

Position: -242 Score: 3.5 Sequence: TTTAAAGATGCTTATCAAAATA Position: -158 Score: 3.7 Sequence: TTTTGTGATATTGGCTATGTAT Locus tag: PROVRETT_01804
	PROVRETT_01804	-242	3.5	TTTAAAGATGCTTATCAAAATA
		-158	3.7	TTTTGTGATATTGGCTATGTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: argB
Ortholog function: Acetylglutamate kinase (EC 2.7.2.8)
Salmonella typhimurium LT2	STM4122	-44	3.5	AATTATGAATAAAAATACATTA
Citrobacter koseri ATCC BAA-895	CKO_03035	-110	4	ATTTGTGAATAAAAATACATTA
Enterobacter sp. 638	Ent638_4027	-44	3.8	AAATGTGAATAAAAATACACTA
Erwinia amylovora ATCC 49946	EAM_0138	-121	3.5	AATAGTGAATAAAAATACAATA
Yersinia pestis KIM	y0311	-43	3.7	TTTATTGACATAAATAAAAATA
Serratia proteamaculans 568	Spro_4780	-167	4	TATTGTGAATAAAAATACAATA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0193	-159	3.5	TATTTTGAATAAAAATACAATA
Edwardsiella tarda EIB202	ETAE_3481	-160	3.4	AATTATGAATAAAAATACAATA
Proteus mirabilis HI4320	PMI3238	-57	3.6	TTTTTTGAATAAAAATACATTA
Photorhabdus luminescens subsp. laumondii TTO1	plu4743	-59	3.6	TTTTTTGAATAAAAATACATTA

Position: 29 Score: 4 Sequence: TTTTTTGCTAGCAATCAAAAAA Locus tag: PROVRETT_02093
	PROVRETT_02093	29	4	TTTTTTGCTAGCAATCAAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mlc
Ortholog function: ROK family transcriptional regulatory protein
Escherichia coli str. K-12 substr. MG1655	b1594	-108	4.1	AAATGTGCTGTTAATCACATGC
Salmonella typhimurium LT2	STM1488	-65	3.8	AGTATTGAAGTGTTTCACCATA
Citrobacter koseri ATCC BAA-895	CKO_01593	-107	3.6	AAaTGTGcagTAaATCACAcgg
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01574	-104	3.8	AAATGTGCGGTAAATCACAAGG
Enterobacter sp. 638	Ent638_1919	-107	3.8	AAATGTGCGGTAAATCACAAGG
Erwinia amylovora ATCC 49946	EAM_1710	-143	4.9	TTATGTGCTGTAAATCACATTC
Yersinia pestis KIM	y2110	-146	4.8	TTATGTGCAGCAAATCACATAA
Serratia proteamaculans 568	Spro_2283	-111	4.8	ATTTGTGCAGCAAATCACATAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2258	-226	4.4	ATATGCGCGCTAAATCACATAA
Edwardsiella tarda EIB202	ETAE_1713	-113	4.8	ATTTGTGCACTTAATCACATAA
Proteus mirabilis HI4320	PMI1292	-126	4.7	ATATGTGCTTTCCATCACGATT
Photorhabdus luminescens subsp. laumondii TTO1	plu2226	-119	4.8	TTTCGTGCTGAATATCACATAT

Position: -242 Score: 4.1 Sequence: ATTAATGGTCTAGTTCACATTA Position: -191 Score: 4.4 Sequence: TTATGAGATGTTTGTCTCATTT Position: -137 Score: 4.9 Sequence: TTATGAGATGTAACTCACAAAA Locus tag: PROVRETT_02138
	PROVRETT_02138	-242	4.1	ATTAATGGTCTAGTTCACATTA
		-191	4.4	TTATGAGATGTTTGTCTCATTT
		-137	4.9	TTATGAGATGTAACTCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: aphA
Ortholog function: acid phosphatase/phosphotransferase
Escherichia coli str. K-12 substr. MG1655	b4055	-130	3.6	CATCCTGCTTTTCATCACAAAA
		-57	4	TTTTGCAACAAATCTCACAATA
Salmonella typhimurium LT2	STM4249	-139	3.7	TGTTGTGATCATCCTCTTTTTT
Citrobacter koseri ATCC BAA-895	CKO_03845	-255	3.9	TATTGTGAATGCGTGTACAGAA
		-224	3.7	GTGTGTGTGGTTTATCACACAT
Enterobacter sp. 638	Ent638_0259	-57	3.8	TTTTTTGACCATTCGCTCAATT
Edwardsiella tarda EIB202	ETAE_3469	-150	5	TTTTGTGATGAATGTCACGTAT
		-98	3.7	AACATAGATCATGATCACATTA
Proteus mirabilis HI4320	PMI0729	-148	4.3	AAGTGTTAGATAGATCAAAAAA
		-87	4.3	TAACGTGCGCTATATCTCATTT
		-34	4.3	TTCTGTGATTAATATAAAAATT

Position: -169 Score: 3.8 Sequence: TTTTGTTAGTTACTTTATAAAA Position: -150 Score: 4.5 Sequence: AAAATTGATTTAAATCAAAAAT Locus tag: PROVRETT_02150
	PROVRETT_02150	-169	3.8	TTTTGTTAGTTACTTTATAAAA
		-150	4.5	AAAATTGATTTAAATCAAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompW
Ortholog function: outer membrane protein W
Escherichia coli str. K-12 substr. MG1655	b1256	-166	4.9	AAAATTGATTTAAATCACATTA
		-82	3.8	TAATGTGATCTATGTAGGATCA
Salmonella typhimurium LT2	STM1732	-82	4.2	AAATGTGATCTGTATTAGATCA
Citrobacter koseri ATCC BAA-895	CKO_01333	-82	3.9	TAATGTGATCTGTATTGGATCA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01248	-101	3.9	CATTGCGATCGGTAGCAAAAAT
		-45	4	TAGTGTGATCTAAAACAGATCA
Enterobacter sp. 638	Ent638_2283	-121	3.7	AAAATTAATCTGGATCAACAAA
Yersinia pestis KIM	y2044	-69	3.9	AGATGTGATCTCGATTAGATCA
Serratia proteamaculans 568	Spro_2674	-135	3.8	TTTTTTGATTCAGATCAATCCT
Edwardsiella tarda EIB202	ETAE_1528	-161	3.9	CTGATTGATGTCTATCAAATTT
Proteus mirabilis HI4320	PMI1350	-168	4.6	AAATTTGATGTGGATCAATTAT
		-85	3.8	AGTTGTGATCGGCATTAGATCA
Photorhabdus luminescens subsp. laumondii TTO1	plu2478	-164	4.3	AACTTTGATTTGGATCAAGTTA
		-39	3.8	TATTTTGATTGACTTTAAATCA

Position: -270 Score: 4.8 Sequence: TAAAGTGATCTATGTCACGAAA Locus tag: PROVRETT_02168
	PROVRETT_02168	-270	4.8	TAAAGTGATCTATGTCACGAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ychE
Ortholog function: putative channel protein
Escherichia coli str. K-12 substr. MG1655	b1242	-257	5.1	TTACGTGATCCAAATCAAATTT
Salmonella typhimurium LT2	STM1748	-256	4.8	TTGTGTGATCTAAATCAAGATT
Citrobacter koseri ATCC BAA-895	CKO_01319	-167	5	TTGCGTGATCCAGATCAAATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02198	-261	4.8	TTACGTGATTTAGATCAAGTAT
Enterobacter sp. 638	Ent638_2303	-256	4	AAACATGATCTGAATCAATTTA
Erwinia amylovora ATCC 49946	EAM_1899	-158	3.8	AAAGATGATGCAGATCATCAAT
Serratia proteamaculans 568	Spro_2703	-268	5.2	TTTTGTGATTTAAATCATAAAA
Proteus mirabilis HI4320	PMI1485	-290	5.3	TAAAGTGATCTACATCACAATA
Photorhabdus luminescens subsp. laumondii TTO1	plu2495	-295	4.9	TATATTGATCTTAATCACATAA

Position: -234 Score: 4.7 Sequence: TTTCGTGACATAGATCACTTTA Locus tag: PROVRETT_02169
	PROVRETT_02169	-234	4.7	TTTCGTGACATAGATCACTTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhE
Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
Escherichia coli str. K-12 substr. MG1655	b1241	-241	5	AAATTTGATTTGGATCACGTAA
Salmonella typhimurium LT2	STM1749	-242	4.9	AATCTTGATTTAGATCACACAA
Citrobacter koseri ATCC BAA-895	CKO_01318	-242	4.9	AAATTTGATCTGGATCACGCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02199	-237	4.7	ATACTTGATCTAAATCACGTAA
Enterobacter sp. 638	Ent638_2304	-253	4.1	TAAATTGATTCAGATCATGTTT
Erwinia amylovora ATCC 49946	EAM_1900	-223	3.9	ATTGATGATCTGCATCATCTTT
Yersinia pestis KIM	y2023	-286	5.3	TTTTGTGATTTAAATCACGAAA
Serratia proteamaculans 568	Spro_2704	-278	5.1	TTTTATGATTTAAATCACAAAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2326	-315	4.5	AAGTTCGATGTTGATCACAAAA
Edwardsiella tarda EIB202	ETAE_1508	-265	5	TTTCGTGACCTTAATCACAAAA
Proteus mirabilis HI4320	PMI1486	-246	5.4	TATTGTGATGTAGATCACTTTA
		-187	3.7	AAAGGAGATCTTTTTAAAATAT
Photorhabdus luminescens subsp. laumondii TTO1	plu2496	-237	3.7	TATTTTTATTAGATTAAAAATT
		-138	4.6	TTATGTGATTAAGATCAATATA

Position: -150 Score: 5.6 Sequence: ATATGTGATACGGTTCACAAAT Locus tag: PROVRETT_02187
	PROVRETT_02187	-150	5.6	ATATGTGATACGGTTCACAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: msrB
Ortholog function: methionine sulfoxide reductase B
Escherichia coli str. K-12 substr. MG1655	b1778	-137	5.2	AAATGTGATTTTCATCACGATT
Salmonella typhimurium LT2	STM1291	-107	4.7	TAATGTGACATCAGTCACGATT
Citrobacter koseri ATCC BAA-895	CKO_01799	-107	4.9	AAACGTGATTCCGATCACGATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01198	-135	5.1	AAACGTGATTTAAGTCACAATT
Enterobacter sp. 638	Ent638_1676	-137	5.2	ATATGTGAGAAAGATCACAATT
Erwinia amylovora ATCC 49946	EAM_1930	-137	5.2	AATGGTGATCTGCATCACAATT
Yersinia pestis KIM	y2164	-85	5.1	ATTTGCGATTTTTATCACATTT
Serratia proteamaculans 568	Spro_2727	-143	5.7	ATATGTGATCGGTATCACATAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2343	-135	5.6	TTATGTGATACACATCACAATT
Edwardsiella tarda EIB202	ETAE_1484	-91	4.9	GTTTGTGATGCTCATCACAAAA
Proteus mirabilis HI4320	PMI1503	-137	5.3	TTATGTGAAATGTATCACATTT
Photorhabdus luminescens subsp. laumondii TTO1	plu2557	-267	4.6	ATATGCGAGTCACATCACAATA

Position: -227 Score: 5.3 Sequence: ATTTGTGAACCGTATCACATAT Locus tag: PROVRETT_02188
	PROVRETT_02188	-227	5.3	ATTTGTGAACCGTATCACATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gapA
Ortholog function: glyceraldehyde-3-phosphate dehydrogenase
Escherichia coli str. K-12 substr. MG1655	b1779	-226	5.3	AATCGTGATGAAAATCACATTT
Salmonella typhimurium LT2	STM1290	-226	4.8	AATCGTGACTGATGTCACATTA
Citrobacter koseri ATCC BAA-895	CKO_01800	-226	5	AATCGTGATCGGAATCACGTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01197	-225	5.2	AATTGTGACTTAAATCACGTTT
Enterobacter sp. 638	Ent638_1675	-225	5.7	AATTGTGATCTTTCTCACATAT
Erwinia amylovora ATCC 49946	EAM_1931	-215	5.4	AATTGTGATGCAGATCACCATT
Yersinia pestis KIM	y2165	-218	5.1	AAATGTGATAAAAATCGCAAAT
Serratia proteamaculans 568	Spro_2728	-227	5.6	ATATGTGATACCGATCACATAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2344	-235	5.8	AATTGTGATGTGTATCACATAA
Edwardsiella tarda EIB202	ETAE_1483	-227	5.1	TTTTGTGATGAGCATCACAAAC
Proteus mirabilis HI4320	PMI1504	-226	5.6	AAATGTGATACATTTCACATAA
Photorhabdus luminescens subsp. laumondii TTO1	plu2558	-224	5.4	TATTGTGATGTGACTCGCATAT

Position: -124 Score: 4.7 Sequence: AAATGTGATGAAATTTAAATTT Locus tag: PROVRETT_02193
	PROVRETT_02193	-124	4.7	AAATGTGATGAAATTTAAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dadA
Ortholog function: D-amino acid dehydrogenase small subunit
Escherichia coli str. K-12 substr. MG1655	b1189	-116	4.7	AGATGTGAGCCAGCTCACCATA
Salmonella typhimurium LT2	STM1803	-107	4.6	ATATGTGAAGCACGTCACCATA
Citrobacter koseri ATCC BAA-895	CKO_01193	-107	4.5	AGATGTGAGGTGCGTCACCATA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02309	-106	4.1	TGCTGTGAGTTAAGTCACCATA
Enterobacter sp. 638	Ent638_2363	-107	4.3	AGGTGTGAGGTAAGTCACCATA
Serratia proteamaculans 568	Spro_2746	-113	4.6	AATTGTGAATGTTGTCACGTTT
Proteus mirabilis HI4320	PMI1509	-121	4.7	AAATGTGATTTGACTCTAAAAT
Photorhabdus luminescens subsp. laumondii TTO1	plu2561	-114	5.4	AATTGTGATCTAAATCATAAAT

Position: -48 Score: 3.9 Sequence: TTCTATGATTTGCCTCACTCTT Locus tag: PROVRETT_02195
	PROVRETT_02195	-48	3.9	TTCTATGATTTGCCTCACTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadR
Ortholog function: fatty acid metabolism regulator
Escherichia coli str. K-12 substr. MG1655	b1187	-21	3.9	CTGTGTTATGGAAATCTCACTA
Salmonella typhimurium LT2	STM1805	-21	3.8	CTGTGTAATGGAAATCTCACTA
Enterobacter sp. 638	Ent638_2365	-21	3.8	CTGTGTAATGGAAATCTCACTA
Yersinia pestis KIM	y2177	-113	3.8	CTTTATGACTGCTTTCACCATT
Proteus mirabilis HI4320	PMI1510	-111	4.4	TTTTATGATGCCATTCACTATT
		-84	3.8	ATGGTTGAGCTATATCAAAATT

Position: -120 Score: 5.6 Sequence: AAATGTGATACAATTCACATAA Locus tag: PROVRETT_02202
	PROVRETT_02202	-120	5.6	AAATGTGATACAATTCACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sotB
Ortholog function: Probable sugar efflux transporter
Escherichia coli str. K-12 substr. MG1655	b1528	-94	4.9	AAACGCGATCCAGATCACAAAT
Salmonella typhimurium LT2	STM1522	-94	4.5	AAATGAGAAGCAGGTCACAAAA
Citrobacter koseri ATCC BAA-895	CKO_01548	-94	4.8	TAATGAGACATACATCACAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01628	-94	4.8	AAATGAGACGCAGATCACAAAA
Enterobacter sp. 638	Ent638_2000	-95	4.9	TTTTGAGATCTGCGTCACATAA

Position: -58 Score: 3.7 Sequence: AATTTTAATCCATTACTCAAAA Locus tag: PROVRETT_02229
	PROVRETT_02229	-58	3.7	AATTTTAATCCATTACTCAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: manY
Ortholog function: PTS system, mannose/fructose/sorbose family, IIC subunit
Escherichia coli str. K-12 substr. MG1655	b1818	-60	3.8	TATTGTGTTGATTATCACTCAG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02334	-163	3.8	TTAACGGATCTTCATCACATTA
Enterobacter sp. 638	Ent638_2387	-166	3.8	ATTACGGATCTTCATCACATAA
Yersinia pestis KIM	y2552	-231	3.9	ATAGATGAGCAATGTCACATAA
Edwardsiella tarda EIB202	ETAE_1558	-267	3.9	ATTAACGATGGGCGTCACATAA

Position: -202 Score: 3.6 Sequence: TTAAGTGTTGCCTTTAATATAA Locus tag: PROVRETT_02232
	PROVRETT_02232	-202	3.6	TTAAGTGTTGCCTTTAATATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: b1821
Ortholog function: hypothetical protein
Salmonella typhimurium LT2	STM1834	-276	3.7	AATTGTTATTTAATTTAACGTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2389	-267	3.8	TAGTGTTGTTTGCATCATAAAT
Proteus mirabilis HI4320	PMI1608	-272	3.8	AATTATTATCAATATCATCTTT
		-237	3.9	TAATATGTTGCCTTTCATAAAT
Photorhabdus luminescens subsp. laumondii TTO1	plu2701	-281	3.9	TATTGTGCTATCTTTTAAATTG
		-179	3.7	AAACGTGGTGCGGGTAACCTTA

Position: -258 Score: 4.1 Sequence: TAATGTGATTAATTTTTTATAT Position: -44 Score: 3.7 Sequence: TACTGTTATCGCTCTTACCTTA Locus tag: PROVRETT_02327
	PROVRETT_02327	-258	4.1	TAATGTGATTAATTTTTTATAT
		-44	3.7	TACTGTTATCGCTCTTACCTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: maeB
Ortholog function: malic enzyme
Escherichia coli str. K-12 substr. MG1655	b2463	-257	3.9	ATGAGTGCGTTAATTCACACTT
Salmonella typhimurium LT2	STM2472	-240	3.8	ATGAGTGTGTTGATTCACACTT
Enterobacter sp. 638	Ent638_2958	-231	4.1	ATACATGACGTACTTAACAAAA
Yersinia pestis KIM	y1449	-92	3.7	GATTGTGATAAATCACTCACTA
Serratia proteamaculans 568	Spro_3472	-209	3.6	CTTTGTTATCAAACTCACTATC
		-90	4.1	GTTTGTGACGTTTCTCTCACTA
Photorhabdus luminescens subsp. laumondii TTO1	plu2719	-74	4	TGTTATGATTTGACACACAGTA

Position: -120 Score: 3.9 Sequence: TTATTATATATTTCTCACATTT Position: 15 Score: 3.7 Sequence: AACTGTGACACCATTAAAAAAG Locus tag: PROVRETT_02329
	PROVRETT_02329	-120	3.9	TTATTATATATTTCTCACATTT
		15	3.7	AACTGTGACACCATTAAAAAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: yffB
Ortholog function: FIG138056: a glutathione-dependent thiol reductase
Escherichia coli str. K-12 substr. MG1655	b2471	-246	3.8	GTATGTGATACACAGCAACATT
Salmonella typhimurium LT2	STM2482	-282	4	TTATGTGACTTACTGCAATATT
Citrobacter koseri ATCC BAA-895	CKO_00317	-276	4	TTATGTGACTTACTGCAATATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02804	-218	4	TAATGTGACGTAGAGCAACCTC
		-179	4	TAATGTTAAAGCCCTCACATCA
Enterobacter sp. 638	Ent638_2966	-254	4	TTATGTGACCAATAGCAATATT
		-77	3.6	ATATGTTATGTTTTGCCAAATA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1292	-138	3.7	TTCTGCAACGCAGTTCACAGTA

Position: -171 Score: 4.4 Sequence: AAGTATGATGCACGTCAAATAA Locus tag: PROVRETT_02375
	PROVRETT_02375	-171	4.4	AAGTATGATGCACGTCAAATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yjjI
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655	b4380	-183	3.9	CACTTCGATACACATCACAATT
		-130	5	TAATGCGATCTGGTTCAAATAA
Salmonella typhimurium LT2	STM4566	-183	3.7	CACTTCGATATACATCACAGTT
		-130	4.8	TAATGAGATCTGAATCAAATTA
Citrobacter koseri ATCC BAA-895	CKO_03411	-75	3.7	CACTTCGATATACATCACAGTT
		-22	4.4	TAACGAGATCCACTTCAAATAA
Enterobacter sp. 638	Ent638_0540	-133	4.7	TAATGAGATCCACTTCAAATTT
Proteus mirabilis HI4320	PMI2509	-159	3.7	TTATTTTAGATATATCTAATTT

Position: -50 Score: 4.2 Sequence: ATCTGTGATCTTTCCCATAATA Locus tag: PROVRETT_02427
	PROVRETT_02427	-50	4.2	ATCTGTGATCTTTCCCATAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pepT
Ortholog function: peptidase T
Escherichia coli str. K-12 substr. MG1655	b1127	-73	3.6	AAAAGTGACCTGACGCAATATT
Salmonella typhimurium LT2	STM1227	-73	3.6	AAAAGTGACCTGACGCAATATT
Citrobacter koseri ATCC BAA-895	CKO_01926	-73	3.6	AAAAGTGACCTGACGCAATATT
Enterobacter sp. 638	Ent638_1640	-31	3.6	AAAAGTGACCTGACGCAATATT
Yersinia pestis KIM	y1791	-27	3.7	ATATTTGATCATGATCACTTCC
Serratia proteamaculans 568	Spro_2009	-188	4.1	CGTCGTGAAGAAGATCACACAT

Position: -178 Score: 4.2 Sequence: GAATGTGATCGTAGTCATAATA Position: -150 Score: 3.9 Sequence: TAAATTGATGTGAATCAATATT Position: -88 Score: 3.7 Sequence: TAGTGTGAGTTGTGGCTAATTA Position: -50 Score: 3.6 Sequence: TTTTATGAGAAACCTTAAATAA Locus tag: PROVRETT_02438
	PROVRETT_02438	-178	4.2	GAATGTGATCGTAGTCATAATA
		-150	3.9	TAAATTGATGTGAATCAATATT
		-88	3.7	TAGTGTGAGTTGTGGCTAATTA
		-50	3.6	TTTTATGAGAAACCTTAAATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndh
Ortholog function: NADH dehydrogenase (EC 1.6.99.3)
Escherichia coli str. K-12 substr. MG1655	b1109	-154	3.9	AAACTTGATTAACATCAATTTT
Salmonella typhimurium LT2	STM1211	-154	4.1	AAACTTGATGCACATCAATTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01106	-152	4.1	AAACTTGATGCACATCAATTTT
Enterobacter sp. 638	Ent638_1624	-153	4	AAACTTGATTCATATCAATTTT
Erwinia amylovora ATCC 49946	EAM_1473	-55	3.7	TAAGGTTATTTTATTAACCTTT
Yersinia pestis KIM	y1777	-152	3.8	AAAGTTGATATATATCAATTTT
Serratia proteamaculans 568	Spro_1926	-153	4.3	AAGTTTGATGTACATCAATTTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1815	-153	4	TAAATTGATATATATCAATTTT
Edwardsiella tarda EIB202	ETAE_2070	-166	4.3	TTATTTGATTTGAATCAATTTT
Proteus mirabilis HI4320	PMI0875	-157	4.6	TTTTTTGATATAAATCAACTTT
Photorhabdus luminescens subsp. laumondii TTO1	plu2821	-154	3.8	GAATTTGATGTTGTTCAATTTT

Position: -139 Score: 5 Sequence: TATTGTGATAACCGTCACACAT Position: -98 Score: 5 Sequence: ATTAGTGATTAACATCACAATT Locus tag: PROVRETT_02476
	PROVRETT_02476	-139	5	TATTGTGATAACCGTCACACAT
		-98	5	ATTAGTGATTAACATCACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: scrT
Ortholog function: Sucrose permease, major facilitator superfamily
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03262	-135	4.4	ATTTTTGATCGCGATCGCATCT
		-94	5.1	TTTTGTGATTAACATCATATAT
		-46	3.6	TTTTGTTAACGTTACCATAATT
Serratia proteamaculans 568	Spro_2083	-139	4.1	TTCGGTGATTTCGATCACACTC
		-98	4.7	TTTTGTGATTAACATCGCAATC
Proteus mirabilis HI4320	PMI0850	-223	3.7	AAACGTGAAATATCTAATGAAT
		-141	4.4	AATAGCGATCTATCGCACATAA
		-100	4.4	TTTAGTGCGTTAAATCACATAA

Position: -61 Score: 4.1 Sequence: TTTTGTGTCTTTTTACACAATA Locus tag: PROVRETT_02500
	PROVRETT_02500	-61	4.1	TTTTGTGTCTTTTTACACAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: spr
Ortholog function: predicted peptidase, outer membrane lipoprotein
Escherichia coli str. K-12 substr. MG1655	b2175	-130	4.1	TTTTGTGCGTTAGTCCACAGAT
Salmonella typhimurium LT2	STM2214	-128	3.7	ATTTGTGCGTTCCGCCACAGAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02608	-292	3.6	TAGGGTAATCTCGTTCTCGTTT
		-234	4.2	AATTGTGCGTGACTGCACAAAT
Enterobacter sp. 638	Ent638_2771	-250	3.6	AATCGCTTTGTCTATCACAATT
Yersinia pestis KIM	y2908	-128	3.7	GAATGTGCGTTCATGCACATTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2735	-159	3.9	TAATGTGCATTCTGGCACACTT
Edwardsiella tarda EIB202	ETAE_2298	-131	4.4	AAGTGTGTTCTGCTGCACAATT
Proteus mirabilis HI4320	PMI0831	-129	4.2	TTACGTGCTTTAGAGCACGTTT

Position: -208 Score: 3.8 Sequence: TGCAATGATTTATGTCACAAAA Locus tag: PROVRETT_02501
	PROVRETT_02501	-208	3.8	TGCAATGATTTATGTCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yejG
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655	b2181	-158	3.7	AAACGTGACCACGCCCGCAGAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02614	-204	3.8	AAAGTTGTTTTGGATCACAGAA
Erwinia amylovora ATCC 49946	EAM_2233	-177	3.6	AAATGAGCATTACTTCTCAAAA
Yersinia pestis KIM	y2914	-238	4.4	AAATGGGATCTGAATCCCAAAT
Serratia proteamaculans 568	Spro_3250	-214	4.2	AAATGCGAGCTGAGTCGCAAAA
		-121	4.1	GCTTGTGATGTTTTTTACATTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2740	-178	4	ATTCGTGATCAGTTTGGCATTA
		-101	3.8	TGTTGTTTTTTTGTTCACGAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu2865	-185	4.1	AAATGAGAGATTGATCTCACTT
		-183	3.6	ATGAGAGATTGATCTCACTTTT
		-141	3.8	TAATGTAATACTATAAACACAA

Position: -244 Score: 3.3 Sequence: TAAAGTGACTAAAGGTAAATTT Position: -189 Score: 3.8 Sequence: TTGATTGATTTTTATCAAAATG Position: -129 Score: 4.3 Sequence: TTATGTGATGAGGTCAAAATAA Position: 5 Score: 3.8 Sequence: CTTTATGATTCAACTCGCCATT Locus tag: PROVRETT_02553
	PROVRETT_02553	-244	3.3	TAAAGTGACTAAAGGTAAATTT
		-189	3.8	TTGATTGATTTTTATCAAAATG
		-129	4.3	TTATGTGATGAGGTCAAAATAA
		5	3.8	CTTTATGATTCAACTCGCCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dcuB
Ortholog function: C4-dicarboxylate transporter DcuB
Escherichia coli str. K-12 substr. MG1655	b4123	-53	3.5	GACTGTGATCTATTCAGCAAAA
Salmonella typhimurium LT2	STM4301	-53	3.5	GGCTGTGATCCATTTATCAAAA
Citrobacter koseri ATCC BAA-895	CKO_03748	-52	3.9	GACTGTGATCTATTTATCAAAA
Enterobacter sp. 638	Ent638_2479	-81	3.3	AAATCTGATCTGGCTCCCAGCC
Serratia proteamaculans 568	Spro_3863	-77	3.6	GTTTGTGATCGCTATCCCTCAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1533	-296	3.5	TATTGCGAGCGAGATCTTTTAT
		-247	3.5	TTAATAGATTTAGATCAAGAAA
Edwardsiella tarda EIB202	ETAE_2844	-194	3.6	ATACTTTATTCAGATCAATTTT
Proteus mirabilis HI4320	PMI0389	-138	3.3	AACTATAACAACGATCAAAAAA

Position: -125 Score: 3.6 Sequence: TAACATGATATCAATCATGATG Position: -62 Score: 3.6 Sequence: ATATCTGAGTCTTTTCATGTTT Locus tag: PROVRETT_02638
	PROVRETT_02638	-125	3.6	TAACATGATATCAATCATGATG
		-62	3.6	ATATCTGAGTCTTTTCATGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ackA
Ortholog function: acetate kinase
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02687	-95	3.8	AGGCATGATGTTAATCATAAAT
Enterobacter sp. 638	Ent638_2840	-96	3.8	TGGCATGATGTTAATCATAAAT
Serratia proteamaculans 568	Spro_3316	-125	3.8	TCACATGATGTTAATCATAAAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3039	-95	4.2	AGGTATGATGTTAATCATAAAT
Proteus mirabilis HI4320	PMI1771	-123	3.6	AAGCATGATGCGTATCATTAAT
Photorhabdus luminescens subsp. laumondii TTO1	plu3095	-121	3.6	TAGCATGATGTTAATCATTTAA

Position: -213 Score: 4.4 Sequence: AAATGTGATCCAACAAGCATAT Locus tag: PROVRETT_02680
	PROVRETT_02680	-213	4.4	AAATGTGATCCAACAAGCATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hutU
Ortholog function: urocanate hydratase
Citrobacter koseri ATCC BAA-895	CKO_02357	-123	3.8	AAGCGTGATTGCTGACGCAATA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00795	-124	4	AAACGTGATTGCTGACGCAATA
Enterobacter sp. 638	Ent638_1263	-120	4	AAGCGTGATAGCTAACGCAATA
Erwinia amylovora ATCC 49946	EAM_1253	-121	3.8	TTTTGTGACAAAGCTGGCACAA
Yersinia pestis KIM	y4038	-261	4.9	ATATGTGATTTGGTGCGCAAAT
Serratia proteamaculans 568	Spro_0805	-196	4.8	TATTGTGATTTGACGCGCAAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu3193	-203	4.7	ATTTGTGATTATAAACACAAAA

Position: -192 Score: 4.3 Sequence: TTTTGTTAAATATGTCGCATTT Locus tag: PROVRETT_02688
	PROVRETT_02688	-192	4.3	TTTTGTTAAATATGTCGCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadL
Ortholog function: Long-chain fatty acid transport protein
Escherichia coli str. K-12 substr. MG1655	b2344	-269	4.8	ATAAGTGACCGAAATCACACTT
		-247	3.9	AAAAATGATCTAAAACAAAATT
Salmonella typhimurium LT2	STM2391	-262	4.8	TTAAGTGACCGAAATCACACTT
		-240	3.9	AAAAATGATCTAAAACAAAAAT
Citrobacter koseri ATCC BAA-895	CKO_00446	-263	4.8	ATAAGTGACCGAAATCACACTT
		-241	3.9	AAAAATGATCTAAAACAAAAAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02726	-264	4.7	TTAAGTGACAGAAATCACACTT
		-242	3.9	AAAAATGATCTAAAACAAAAAT
Enterobacter sp. 638	Ent638_2884	-269	4.2	GTAAGTGACCGATATCACACTA
		-247	4	AAAAATGATCTAGCGCAAAAAT
		-214	3.7	ATGAGTGCGACGGCTCGCATTT
Erwinia amylovora ATCC 49946	EAM_2348	-194	3.9	TTTTGTTAAGCAGATCTCTTTT
Serratia proteamaculans 568	Spro_3381	-271	5.1	TTAAGTGATGGAAATCACAAAT
		-196	3.8	TTTTGTTAGCCAGATCTCTCTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3081	-332	3.8	AATTTTTATCTTCCTTATATTT
		-262	4.9	TTTAGTGATATCAGTCACATTA
Proteus mirabilis HI4320	PMI1810	-326	3.7	AAGTGTTAATTATCTATCATAA
		-186	4.2	TAATGTTAACTAAATCCCAAAT

Position: -336 Score: 3.5 Sequence: TTTTATGATGAAAAAAACAACA Position: -188 Score: 3.8 Sequence: AAATTAGATACGGGTCAAAGTT Position: -53 Score: 3.8 Sequence: TAACGTGATGACTCAAAAATTT Locus tag: PROVRETT_02789
	PROVRETT_02789	-336	3.5	TTTTATGATGAAAAAAACAACA
		-188	3.8	AAATTAGATACGGGTCAAAGTT
		-53	3.8	TAACGTGATGACTCAAAAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hexR
Ortholog function: Phosphogluconate repressor HexR, RpiR family
Escherichia coli str. K-12 substr. MG1655	b1853	-151	3.9	AAATCTGACACTGATCATGTTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02368	-134	3.6	AAATACGACCCTGATCATGTAA
Yersinia pestis KIM	y2245	-152	3.7	AAATTAGACACAGGTCATATTA
Proteus mirabilis HI4320	PMI1156	-58	3.6	AACCGTTATAGATTTCTCCTTT
Photorhabdus luminescens subsp. laumondii TTO1	plu2121	-132	3.7	TTTTATGAAAAACATTAAATTA

Position: -306 Score: 3.9 Sequence: AACTTTGACCCGTATCTAATTT Position: -158 Score: 3.7 Sequence: TGTTGTTTTTTTCATCATAAAA Position: -137 Score: 4.1 Sequence: AACTGTGATCGGTATCATGAAC Position: -71 Score: 3.6 Sequence: TAATTTTAACAAAATTACAATA Locus tag: PROVRETT_02790
	PROVRETT_02790	-306	3.9	AACTTTGACCCGTATCTAATTT
		-158	3.7	TGTTGTTTTTTTCATCATAAAA
		-137	4.1	AACTGTGATCGGTATCATGAAC
		-71	3.6	TAATTTTAACAAAATTACAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: zwf
Ortholog function: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
Escherichia coli str. K-12 substr. MG1655	b1852	-208	3.9	TAACATGATCAGTGTCAGATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02367	-225	3.8	TTACATGATCAGGGTCGTATTT
Yersinia pestis KIM	y2244	-231	4.1	TAATATGACCTGTGTCTAATTT
Proteus mirabilis HI4320	PMI1157	-225	3.7	AAGTATGACCTGTGTCTAACTT
Photorhabdus luminescens subsp. laumondii TTO1	plu2122	-234	4.2	TAATTTAATGTTTTTCATAAAA

Position: -118 Score: 3.7 Sequence: TTTAGTGATAGACCTCTCAACC Locus tag: PROVRETT_02800
	PROVRETT_02800	-118	3.7	TTTAGTGATAGACCTCTCAACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadD
Ortholog function: long-chain-fatty-acid--CoA ligase
Escherichia coli str. K-12 substr. MG1655	b1805	-131	3.7	AATAGTGACGCGCTTCGCAACC
Salmonella typhimurium LT2	STM1818	-131	3.7	AATAGTGACGCGCTTCGCAACC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02322	-97	3.7	AATAGTGACGCGCTTCGCAACC
Erwinia amylovora ATCC 49946	EAM_1956	-130	3.9	TTTAGTGATGCGCTTCGCAACC
Yersinia pestis KIM	y2236	-80	4.1	AATAGTGATGTATATCTCAACC
Serratia proteamaculans 568	Spro_2760	-99	3.9	ATTAGTGACGTACATCGCAACC
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2372	-132	3.8	ATTAGTGATCGTTCTCGCAACC
		-75	3.7	TAAAATAATGTTAATAACAATA
Proteus mirabilis HI4320	PMI1166	-121	4.4	TTTAGTGATACACTTCGCATCT
Photorhabdus luminescens subsp. laumondii TTO1	plu2134	-288	3.8	AAATGCTATCTTAAGCAAAAAA
		-137	4	ATTAGTGATGTGTATCTCAACC

Position: -33 Score: 4.4 Sequence: CATTGTGATGAAAATAACAAAG Locus tag: PROVRETT_02801
	PROVRETT_02801	-33	4.4	CATTGTGATGAAAATAACAAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: rnd
Ortholog function: ribonuclease D
Escherichia coli str. K-12 substr. MG1655	b1804	-131	3.7	AATAGTGACGCGCTTCGCAACC
Salmonella typhimurium LT2	STM1817	-131	3.7	AATAGTGACGCGCTTCGCAACC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02321	-97	3.7	AATAGTGACGCGCTTCGCAACC
Erwinia amylovora ATCC 49946	EAM_1955	-130	3.9	TTTAGTGATGCGCTTCGCAACC
Yersinia pestis KIM	y2235	-73	3.7	TGTTGTGTTTGTTATCGAACTA
Serratia proteamaculans 568	Spro_2759	-99	3.9	ATTAGTGACGTACATCGCAACC
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2371	-132	3.8	ATTAGTGATCGTTCTCGCAACC
		-75	3.7	TAAAATAATGTTAATAACAATA
Proteus mirabilis HI4320	PMI1167	-121	4.4	TTTAGTGATACACTTCGCATCT
Photorhabdus luminescens subsp. laumondii TTO1	plu2135	-288	3.8	AAATGCTATCTTAAGCAAAAAA
		-137	4	ATTAGTGATGTGTATCTCAACC

Position: -159 Score: 5.3 Sequence: AAATGTGATGTAAATCACTTAA Locus tag: PROVRETT_02937
	PROVRETT_02937	-159	5.3	AAATGTGATGTAAATCACTTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: udp
Ortholog function: Uridine phosphorylase (EC 2.4.2.3)
Escherichia coli str. K-12 substr. MG1655	b3831	-144	5.2	TTATGTGATTTGCATCACTTTT
		-92	4.2	CATGGTGATGAGTATCACGAAA
Salmonella typhimurium LT2	STM3968	-144	5.1	TATTGTGATGAACATCACTTTT
		-92	4.1	CATAGTGATGGCTGTCACGAAA
Citrobacter koseri ATCC BAA-895	CKO_00173	-143	5.2	TTATGTGATGTAAATCACTATT
		-91	3.9	CATGGTGATGAGCGTCACGAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04327	-143	5.2	TAATGTGATGTGTATCACTATT
		-91	4.1	CTTGGTGACTATCATCACAAAA
Enterobacter sp. 638	Ent638_3962	-143	4.7	TAGTGTGATGCATGTCACTATT
Erwinia amylovora ATCC 49946	EAM_0200	-143	4.6	AATTGCGACTTGTATCACCTTT
		-90	4	ATTAAGGATGTTCATCACATAA
Yersinia pestis KIM	y0444	-149	5.4	ATGTGTGATTTAAATCACAATT
		-97	4	CAAGGTGACATAAATCACGAAA
Serratia proteamaculans 568	Spro_0244	-143	5.3	TTTTGTGACTTTAATCACAAAA
		-125	3.7	AAAAGTTATGTAGATTGCATTC
		-91	4.1	CATAGTGATGGTTGTCACGAAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0185	-197	5.1	AAAAGTGATTTAAGTCACATTT
Edwardsiella tarda EIB202	ETAE_0143	-148	4.7	TATTGTGAAAATAATCACAGTT
Proteus mirabilis HI4320	PMI3532	-145	5.1	ATTTGTGATAACTATCACGTTT
		-93	3.6	ACAGGTGACGTCAATCACTAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu4417	-271	5.2	TTTTGTGATTTATATCTCAAAA
		-219	4	TGAAGTGACATTTATCACTAAA

Position: -331 Score: 4.6 Sequence: AAATGAGATCGAAATCATATTT Locus tag: PROVRETT_02994
	PROVRETT_02994	-331	4.6	AAATGAGATCGAAATCATATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: uxuB
Ortholog function: D-mannonate oxidoreductase (EC 1.1.1.57)
Escherichia coli str. K-12 substr. MG1655	b4323	-271	3.8	TGTTGCGATGAATGTCACATCC
		-186	4.5	TCTTGTGATGTGGTTAACCAAT
Salmonella typhimurium LT2	STM3136	-205	4.3	AAAATTGACACAGATCAAATAA
		-155	4.6	ATTTGTGATTTGGTTAGCCAAT

Position: -31 Score: 3.5 Sequence: AGGTGTTATTTAATTCTGAATT Locus tag: PROVRETT_03018
	PROVRETT_03018	-31	3.5	AGGTGTTATTTAATTCTGAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ybiH
Ortholog function: putative transcriptional regulator
Escherichia coli str. K-12 substr. MG1655	b0796	-123	4.5	TTTTGTGACGCAGCGCATAAAT
Salmonella typhimurium LT2	STM0819	-124	4.7	TTTTGTGATGCGGCGCATAAAT
Citrobacter koseri ATCC BAA-895	CKO_02331	-124	4.5	TTTTGTGACATACCGCATAAAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00824	-224	3.6	AAATGAAACGGTATTCAAAAAA
		-118	4.7	AATTGTTAAGCCCATCACAAAT
Enterobacter sp. 638	Ent638_1287	-126	4.4	TTTTGTGACACGGCGCATAAAA
Serratia proteamaculans 568	Spro_1330	-146	4.6	TTAAGTGACGCAGAGCACAATA
Proteus mirabilis HI4320	PMI0619	-160	3.6	AATTTTTAAATAAATCATGTTT

Position: -76 Score: 4.8 Sequence: AATAGTGACAATCATCACATAT Locus tag: PROVRETT_03053
	PROVRETT_03053	-76	4.8	AATAGTGACAATCATCACATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cdd
Ortholog function: cytidine deaminase
Escherichia coli str. K-12 substr. MG1655	b2143	-128	4.3	ATTTGCGATGCGTCGCGCATTT
		-78	5.1	TAATGAGATTCAGATCACATAT
Salmonella typhimurium LT2	STM2183	-128	4.2	ATTTGCGATACGTCGCGCATTT
		-78	4.8	CAATGAGATTTAGATCACATAT
Citrobacter koseri ATCC BAA-895	CKO_00646	-128	4.3	ATTTGCGATGCGTCGCGCATTT
		-78	4.8	CAATGAGATTTGGATCACATAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02584	-78	4.4	GAATGAGATATTCATCACATAT
Enterobacter sp. 638	Ent638_2746	-127	4.2	ATTTGCGATGCGTCGCGCAATT
		-77	4.9	TAATGAGAACTGGATCACATAT
Erwinia amylovora ATCC 49946	EAM_2202	-124	3.9	ACTTGCGATAAGTCTCTCATTT
		-104	4.1	TTTGGTGATGCATTTCATTTAT
		-74	4.7	TAGAGCGATTTAGATCACATAT
Yersinia pestis KIM	y2657	-75	5	TAATGAGATATAAATCACAATT
Serratia proteamaculans 568	Spro_1568	-127	4.1	ACTTGCGATACATCTCGCAATT
		-77	4.5	TAAAGAGATTTACATCACACTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2830	-130	4.6	AATTGAGATACATCTCGCATTT
		-79	4.5	TAAAGAGATTCCGATCACAATT
Edwardsiella tarda EIB202	ETAE_1162	-76	4.9	AAAAGTGATTATTATCACAAAT
Proteus mirabilis HI4320	PMI0643	-132	4.4	ATTTGAGATGTATCTCCCAATT
		-82	5.1	AAATATGATTTTAATCACATAT
Photorhabdus luminescens subsp. laumondii TTO1	plu1547	-75	4.7	CTATATGATATTTATCACATTA

Position: -71 Score: 5.2 Sequence: TATTGTGATCGGTAGCACAATA Locus tag: PROVRETT_03055
	PROVRETT_03055	-71	5.2	TATTGTGATCGGTAGCACAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yohJ
Ortholog function: LrgA family protein
Escherichia coli str. K-12 substr. MG1655	b2141	-68	4.9	TAATGTGATCGGTAGCACGTTT
Salmonella typhimurium LT2	STM2181	-68	4.6	TGATGTGATCGGTAGCACGTTT
Citrobacter koseri ATCC BAA-895	CKO_00648	-68	4.6	TGATGTGATCGGTAGCACGTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02582	-68	5	TGATGTGATCGGTAGCACATTT
Enterobacter sp. 638	Ent638_2744	-68	4.7	TGATGTGATCCGTAGCACGTTT
Yersinia pestis KIM	y2654	-32	4.7	TAGTGTGATGGGTAGCACAGAA
Serratia proteamaculans 568	Spro_1570	-62	4.3	ATTTGTGGCGGAGGTCACAGTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2828	-69	4.5	ATTCGTGATCTGTGGCACGTAA
Edwardsiella tarda EIB202	ETAE_1164	-68	4.9	TGATGTGATCAGTAGCACATTT
Proteus mirabilis HI4320	PMI0645	-71	5.2	TATTGTGATCCATAGCACACTT

Position: -193 Score: 4.5 Sequence: TTCTGTTAACGGGATCACATAT Locus tag: PROVRETT_03063
	PROVRETT_03063	-193	4.5	TTCTGTTAACGGGATCACATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yegH
Ortholog function: putative membrane protein
Escherichia coli str. K-12 substr. MG1655	b2063	-43	4.6	AATTGTGACATTTGTCATACAA
Salmonella typhimurium LT2	STM2119	-42	4.5	AATTGTGACAATTGTCATATTA
Citrobacter koseri ATCC BAA-895	CKO_00719	-42	4.5	AATTGTGACAACTGTCATATAA
Enterobacter sp. 638	Ent638_2677	-42	4.4	AAGTGTGACAAATGTCATATAA
Photorhabdus luminescens subsp. laumondii TTO1	plu1559	-193	3.9	ATTTGTTAATGTGATCACATGT

Position: -71 Score: 4.9 Sequence: ATATGTGATCCCGTTAACAGAA Locus tag: PROVRETT_03064
	PROVRETT_03064	-71	4.9	ATATGTGATCCCGTTAACAGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gnd
Ortholog function: hypothetical protein
Enterobacter sp. 638	Ent638_2642	-116	4	CAGTGTGACATAGATCAGCAAA
Yersinia pestis KIM	y2629	-78	3.8	AGTTGTGCTATCTATCGCACCA
		-76	3.6	TTGTGCTATCTATCGCACCAAT
Serratia proteamaculans 568	Spro_1608	-297	3.7	ATGCTTGAAGTGGCTCTCACTT
		-72	4.2	ACATGTGTGCCACATCACAAAA
Proteus mirabilis HI4320	PMI0655	-71	4.7	CTATGTGATCAGGTTAACAAAT
Photorhabdus luminescens subsp. laumondii TTO1	plu1560	-74	4.4	ACATGTGATCACATTAACAAAT

Position: -216 Score: 4.7 Sequence: ATCTGTGAGCCATATCAAATAT Locus tag: PROVRETT_03113
	PROVRETT_03113	-216	4.7	ATCTGTGAGCCATATCAAATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cspD
Ortholog function: cold shock-like protein
Escherichia coli str. K-12 substr. MG1655	b0880	-180	4	TAGCGTTAACTGCTTCAAATTT
Salmonella typhimurium LT2	STM0943	-181	4	TAGCGTTAACTGCTTCAAATTT
Citrobacter koseri ATCC BAA-895	CKO_02200	-210	3.9	ATCCGCGACATCTGTCACATTA
		-181	4	TAGCGTTAACTGCTTCAAATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00913	-270	4.2	AGAGGTTATGCTCATCACAAAT
		-180	4	TAGCGTTAACTGCTTCAAATTT
Enterobacter sp. 638	Ent638_1397	-209	3.8	ATCCGCGATATCTGTCACATTC
		-180	3.9	TAGCGTTAACTGCTTCAAAAAT
Serratia proteamaculans 568	Spro_1672	-205	4	TAGCGTTACCTGCTTCAAACTT
		-49	3.9	TTCAGTTATTCATCTCACCTAA
Proteus mirabilis HI4320	PMI0688	-163	3.8	AAGCGTTAGCTACATCAAAGTT
Photorhabdus luminescens subsp. laumondii TTO1	plu1592	-194	4.6	TATCGTTATCTATATCAAACTT

Position: -199 Score: 4.9 Sequence: ATATTTGATATGGCTCACAGAT Locus tag: PROVRETT_03114
	PROVRETT_03114	-199	4.9	ATATTTGATATGGCTCACAGAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: clpS
Ortholog function: ATP-dependent Clp protease adaptor protein
Escherichia coli str. K-12 substr. MG1655	b0881	-164	4	AAATTTGAAGCAGTTAACGCTA
Salmonella typhimurium LT2	STM0944	-164	4	AAATTTGAAGCAGTTAACGCTA
		-104	3.6	AGATGTTAGTTATCTATCAATT
Citrobacter koseri ATCC BAA-895	CKO_02199	-164	4	AAATTTGAAGCAGTTAACGCTA
		-135	4.2	TAATGTGACAGATGTCGCGGAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00914	-167	4	AAATTTGAAGCAGTTAACGCTA
		-77	4.3	ATTTGTGATGAGCATAACCTCT
Enterobacter sp. 638	Ent638_1398	-161	3.9	ATTTTTGAAGCAGTTAACGCTA
		-132	3.8	GAATGTGACAGATATCGCGGAT
Erwinia amylovora ATCC 49946	EAM_1320	-161	4	AAATTTGAAGCAGTTAACGCTA
		-132	4.5	TTTTGTGATAGAGGTCGCTATT
Serratia proteamaculans 568	Spro_1673	-176	3.6	AAGTTTGAAGCAGGTAACGCTA
Edwardsiella tarda EIB202	ETAE_2208	-164	3.8	AAGTTTGAGGCAGTTAACGCAA
		-144	3.6	AATTGTGCGGCAGTGCGCTTTT
Proteus mirabilis HI4320	PMI0689	-268	3.7	TGTCTTTATTTACTTAACATTA
		-148	4.1	AACTTTGATGTAGCTAACGCTT
Photorhabdus luminescens subsp. laumondii TTO1	plu1593	-170	4.3	AAGTTTGATATAGATAACGATA

Position: -89 Score: 4 Sequence: GTTCATGATCCATATCAAATTT Locus tag: PROVRETT_03134
	PROVRETT_03134	-89	4	GTTCATGATCCATATCAAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: focA
Ortholog function: formate transporter
Escherichia coli str. K-12 substr. MG1655	b0904	-156	3.6	TATTTTTATTTGGATAATCAAA
		-78	3.8	AGATATGATCTATATCAATTTC
Salmonella typhimurium LT2	STM0974	-78	4.4	AGATATGATCTATATCAAATTC
Citrobacter koseri ATCC BAA-895	CKO_02167	-198	3.6	TATTTTTATTTGGATAATCAAA
		-120	4.4	AGATATGATCTATATCAAATTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00932	-121	3.8	AGATATGATCTATATCAATTTC
Enterobacter sp. 638	Ent638_1424	-78	3.8	AGATATGATCTATATCAATTTC
Yersinia pestis KIM	y2789	-84	4	CAATATGATCCATATCAATTTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2596	-79	4.5	CAATATGATCCACATCAAATTT
Proteus mirabilis HI4320	PMI0706	-188	4	TTTTTTGATAAAATTTAAAAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu1614	-88	4.7	AATTATGATCTATATCAAATTC

Position: -187 Score: 3.6 Sequence: TATTGTTAATTTCTCCATAAAA Position: -152 Score: 3.8 Sequence: GAGTGTGACAAGATTAACAAAA Locus tag: PROVRETT_03155
	PROVRETT_03155	-187	3.6	TATTGTTAATTTCTCCATAAAA
		-152	3.8	GAGTGTGACAAGATTAACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: serC
Ortholog function: Phosphoserine aminotransferase (EC 2.6.1.52)
Escherichia coli str. K-12 substr. MG1655	b0907	-155	4.8	TTGTGTGATGCAAGCCACATTT
Salmonella typhimurium LT2	STM0977	-142	4.2	TTGTGTGACGCATGCCGCATTT
Citrobacter koseri ATCC BAA-895	CKO_02165	-171	4.6	TTGTGTGACGTAGCGCGCATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00935	-145	3.7	TTGTGTGACGGCGGCCGCGTTT
Enterobacter sp. 638	Ent638_1427	-119	4.4	TTGTGTGACGGTGGACACATTT
Yersinia pestis KIM	y2784	-39	3.3	TATAACGATGGCAATCTCAGTA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2594	-78	3.5	AAGTATGACGGGTATAAAAATG
Proteus mirabilis HI4320	PMI0711	-119	3.5	TATTTTTGTGTGCTACACATAA

Position: -103 Score: 3.2 Sequence: TTTTATGCAATCCCTGACATTA Locus tag: PROVRETT_03156
	PROVRETT_03156	-103	3.2	TTTTATGCAATCCCTGACATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: aroA
Ortholog function: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)
Escherichia coli str. K-12 substr. MG1655	b0908	-155	4.8	TTGTGTGATGCAAGCCACATTT
Salmonella typhimurium LT2	STM0978	-142	4.2	TTGTGTGACGCATGCCGCATTT
Citrobacter koseri ATCC BAA-895	CKO_02164	-171	4.6	TTGTGTGACGTAGCGCGCATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00936	-145	3.7	TTGTGTGACGGCGGCCGCGTTT
Enterobacter sp. 638	Ent638_1428	-119	4.4	TTGTGTGACGGTGGACACATTT
Yersinia pestis KIM	y2783	-39	3.3	TATAACGATGGCAATCTCAGTA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2593	-78	3.5	AAGTATGACGGGTATAAAAATG
Edwardsiella tarda EIB202	ETAE_2177	-104	3.8	TATAGTGACAGCGCTCAATAAA

Position: -173 Score: 3.9 Sequence: TTTTGCGAAGCGCTTCGCAAAC Locus tag: PROVRETT_03162
	PROVRETT_03162	-173	3.9	TTTTGCGAAGCGCTTCGCAAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: ycaI
Ortholog function: hypothetical protein
Salmonella typhimurium LT2	STM0983	-120	4.1	TTTTTTGCTGCGTCTTACATTT
Proteus mirabilis HI4320	PMI0717	-212	3.6	TTACGTGATCTTTCTCTATTTG
		-152	3.6	TTTTTAGAACAACTTCGCAAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu1629	-230	3.7	ATTTGATATCAGTATCGCAATG
		-152	4.4	ATTTGCGAAGCTGTTCGCATAT

Position: 17 Score: 3.6 Sequence: TAACGTTAAGTGGTTCAACGAA Locus tag: PROVRETT_03198
	PROVRETT_03198	17	3.6	TAACGTTAAGTGGTTCAACGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cspE
Ortholog function: cold shock protein E
Escherichia coli str. K-12 substr. MG1655	b0623	-114	4	TAACGCGACTTTTATCACTTTT
Salmonella typhimurium LT2	STM0629	-114	4.3	TAACGCGATATTTATCACTTTT
Citrobacter koseri ATCC BAA-895	CKO_02534	-21	4.3	TAACGCGATATTTATCACTTTT
Enterobacter sp. 638	Ent638_1159	-114	3.8	TAACGCGACTTTTGTCACTTTT
Erwinia amylovora ATCC 49946	EAM_1116	-113	3.6	AAAAACGATATTTATCACTTTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1294	-113	3.9	TTTAGCGACTTTTATCACTTTT

Position: -136 Score: 3.5 Sequence: TAACTTGAAGTATGGCAAACAT Locus tag: PROVRETT_03200
	PROVRETT_03200	-136	3.5	TAACTTGAAGTATGGCAAACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lipB
Ortholog function: Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase
Escherichia coli str. K-12 substr. MG1655	b0630	-94	3.6	AAGTGTAATTTCCGTCCCCATA
Salmonella typhimurium LT2	STM0635.S	-93	4.2	AAGTGTGATTTTCGTCCCCATA
		-35	3.9	AGTTGTTATTTTTTTTACGTAA
Citrobacter koseri ATCC BAA-895	CKO_02528	-91	4.4	AAGTGTGATTTCCATCCCCATA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00662	-97	4.4	AAGTGTGATTTCCATCCCCATA
Enterobacter sp. 638	Ent638_1165	-90	4.4	AAGTGTGATTTCCATCCCCATA
Yersinia pestis KIM	y1173	-146	4.2	TATTGTGATTAATCTTATATTG

Position: -348 Score: 4 Sequence: ATTTTTGATTTATTTATTATAT Position: -248 Score: 4.2 Sequence: ATTTGTGATATGGATTCTATTT Locus tag: PROVRETT_03368
	PROVRETT_03368	-348	4	ATTTTTGATTTATTTATTATAT
		-248	4.2	ATTTGTGATATGGATTCTATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: putP
Ortholog function: Proline/sodium symporter PutP (TC 2.A.21.2.1)
Escherichia coli str. K-12 substr. MG1655	b1015	-207	3.6	AAATGTGAGAGAGTGCAACCTG
Salmonella typhimurium LT2	STM1125	-204	3.6	AAATGTGAGAGAGTGCAACCTG
Citrobacter koseri ATCC BAA-895	CKO_02041	-80	3.6	AAATGTGAGAGAGTGCAACCTG
Enterobacter sp. 638	Ent638_1542	-249	3.7	TTTTATGCGGCACTTAACACTT
Serratia proteamaculans 568	Spro_2930	-211	3.9	AAATGTGACGCAGGGTAAACTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4218	-130	3.7	TTGTGCAACCTTGTTAACAAAT
Proteus mirabilis HI4320	PMI1615	-220	3.8	TAGTGTGAAGTTACATACAAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu1958	-243	4.4	AAATGTGATTCAGTAAACGTTT

Position: -98 Score: 4.8 Sequence: AATTGAGATTTGTGTCACAATA Locus tag: PROVRETT_03369
	PROVRETT_03369	-98	4.8	AATTGAGATTTGTGTCACAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cycA2
Ortholog function: D-alanine/D-serine/glycine permease
Escherichia coli str. K-12 substr. MG1655	b4208	-198	4.7	TTTTGTGAGCTGTTTCGCGTTA
Salmonella typhimurium LT2	STM4398	-193	5.1	TTTTGTGAGCTAATTCGCATTA
		-170	3.9	CAAAGTGATATAACACTCATTT
Citrobacter koseri ATCC BAA-895	CKO_03624	-199	4.4	TTTTGTGAGCTAATTCGCGTTG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04601	-192	4.7	TTTTGTGAGCTATTTCGCGTTA
		-169	3.8	ATGAGTGATATAACACTCACTT
Enterobacter sp. 638	Ent638_0378	-201	4.2	TTTTGTGAGCTGTTTTGCATTG
Yersinia pestis KIM	y2447	-199	4.5	CACTGTGATGTACTTAACAAAA
		-118	3.7	TAATATTAAATTATTCGCAAAT
Proteus mirabilis HI4320	PMI1614	-102	4.4	TTCTGAGATTTGTGTCACAATA
Photorhabdus luminescens subsp. laumondii TTO1	plu1965	-102	4.6	TATAGTAATCTGTGTCACAATA

Position: -252 Score: 4.4 Sequence: AATCGTGATCCTTCTCACTGTT Locus tag: PROVRETT_03534
	PROVRETT_03534	-252	4.4	AATCGTGATCCTTCTCACTGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdhC
Ortholog function: Succinate dehydrogenase cytochrome b-556 subunit
Enterobacter sp. 638	Ent638_1222	-295	4.2	TATCGTGACTGTGATCACTGTT
Erwinia amylovora ATCC 49946	EAM_1168	-249	4.4	AAGTGTGATTTTTGTCACTGTT
		-190	3.6	TAATGAGATTGTGATCCACTTA
Yersinia pestis KIM	y3071	-254	4.5	AATCGTGATCCTAATCACTGTT
Serratia proteamaculans 568	Spro_1263	-253	4.3	ATCCGTGATCTAAATCACTGTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1357	-265	4.7	ATTCGTGATCTAAATCACTGTT
Edwardsiella tarda EIB202	ETAE_2588	-261	3.7	ATGCGTGACCGTTGTCACTGTT
Proteus mirabilis HI4320	PMI0565	-264	4.3	AAAAGTGATCCCTCTCACTGTT

Position: -228 Score: 3.9 Sequence: AGAAGTGACATAGTTCAAGCAA Position: -20 Score: 4.1 Sequence: TTTCTTGATATGGCTTAAATAT Locus tag: PROVRETT_03663
	PROVRETT_03663	-228	3.9	AGAAGTGACATAGTTCAAGCAA
		-20	4.1	TTTCTTGATATGGCTTAAATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yafK
Ortholog function: hypothetical protein
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00238	-208	3.7	AAATGCGAGCTATTGCGCAAAG
Yersinia pestis KIM	y0949	-217	3.7	TTATTTTATACAAAACATATAT
Serratia proteamaculans 568	Spro_0952	-136	4.2	TTTTTTTATACACAACACATAT
Proteus mirabilis HI4320	PMI0351	-297	3.7	AATTGTTACTATTTTCTCTTAT
		-228	3.7	TCGAGTGATTTAGCTCAAGCAA
Photorhabdus luminescens subsp. laumondii TTO1	plu1195	-232	3.9	TCAAGTGATTTAGTTCAAGCAA

Position: -4 Score: 4.7 Sequence: AGATGTGATCTACATCAATTTT Locus tag: PROVRETT_03709
	PROVRETT_03709	-4	4.7	AGATGTGATCTACATCAATTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: raiA
Ortholog function: stationary phase translation inhibitor and ribosome stability factor
Escherichia coli str. K-12 substr. MG1655	b2597	-81	4.8	TTATGAGATTTTCATCACACAT
Citrobacter koseri ATCC BAA-895	CKO_03918	-40	5.2	TAATGTGATTTAAATCACGCTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02919	-88	5.6	AAATGTGATTTATATCACACAT
Enterobacter sp. 638	Ent638_3076	-81	5.4	ATGTGTGATTTAGATCACACAT
Erwinia amylovora ATCC 49946	EAM_2617	-83	5.2	AAATGTGATTTCAATCACGATT
Serratia proteamaculans 568	Spro_0882	-83	4.8	ATACGTGATTTTCATCACGCAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3349	-86	4	AAAAGCGATCAATCTCACGCTT
Edwardsiella tarda EIB202	ETAE_2834	-82	3.8	ATCCGTGATTTTCCTCTCACAC
Proteus mirabilis HI4320	PMI0391	-82	4.6	AAAAGTGATCTTGATCATGTTT
Photorhabdus luminescens subsp. laumondii TTO1	plu1266	-87	5.1	AATAGTGATTTAGATCACCTTT

Position: -105 Score: 5.2 Sequence: TTATTTGATCTTCTTCACAAAT Locus tag: PROVRETT_03771
	PROVRETT_03771	-105	5.2	TTATTTGATCTTCTTCACAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nanE
Ortholog function: N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9)
Salmonella typhimurium LT2	STM3337	-113	4.4	TTTAGTGAAGCAGATCGCACTA
Citrobacter koseri ATCC BAA-895	CKO_04626	-116	4.2	TTTAGTGAAGTAGATCGCACTC

Position: -32 Score: 3.9 Sequence: TAACGTTATTAACATAACGTAA Locus tag: PROVRETT_03953
	PROVRETT_03953	-32	3.9	TAACGTTATTAACATAACGTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: chbC
Ortholog function: N,N'-diacetylchitobiose-specific PTS system , EIIC component
Escherichia coli str. K-12 substr. MG1655	b1737	-201	3.7	AAATGTGAAGAGGGTCATAACC
Salmonella typhimurium LT2	STM1313	-250	3.9	TTTTGTGCCTGCCATAACCTTA
		-203	3.9	AAATGTGAGGGGGGTCATAACG
Citrobacter koseri ATCC BAA-895	CKO_01762	-188	4.1	AAATGTGAGAGGGGTCATAACA
Enterobacter sp. 638	Ent638_1707	-129	3.9	AATTTTGATTAACCGCGAATTA
Yersinia pestis KIM	y1252	-214	4.5	TTTTGCGATAACCATCACATTG
Serratia proteamaculans 568	Spro_0835	-177	4.6	ATTTGCGAGACAGATCACACTA
		-143	3.6	AAATGTGAAGAGGGTCAATCAG

Position: -263 Score: 4.8 Sequence: ATCTGTGATGAATGTCACACAA Locus tag: PROVRETT_03984
	PROVRETT_03984	-263	4.8	ATCTGTGATGAATGTCACACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: aspA
Ortholog function: aspartate ammonia-lyase
Escherichia coli str. K-12 substr. MG1655	b4139	-206	4.5	AGCGGTGATCTATTTCACAAAT
		-156	4.2	TAAAGTGATCCAGATTACGGTA
Salmonella typhimurium LT2	STM4326	-209	4.2	AGCGGTGACCTATTTCACAAAA
		-159	4.2	TTAAGTGATCCAGATTACGGTA
Citrobacter koseri ATCC BAA-895	CKO_03696	-54	4.2	AGCGGTGACCTATTTCACAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04529	-204	3.9	AGCGGTGACCCATTTCACAGAT
		-154	3.8	ATAAGTGATCAAGCTTACTGAT
Enterobacter sp. 638	Ent638_0326	-205	4.1	AGCGGTGATTCATTTCACAGAT
Erwinia amylovora ATCC 49946	EAM_0416	-228	4.2	CAATGTGACCTGGAACAGATAT
Yersinia pestis KIM	y0606	-224	4.6	AAGTGTGAGAGCAATCACAGAT
Serratia proteamaculans 568	Spro_0406	-205	4.7	AAACGTGAATGAGATCACAGAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0621	-272	4	ACTCGTGACTACAATCACAGTT
Edwardsiella tarda EIB202	ETAE_0311	-197	4.4	ATCTGTGAGTATTATCACAGAT
Proteus mirabilis HI4320	PMI2546	-206	4.1	ATCCATGAGATAGATCACAAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu4137	-274	3.8	AGATATAATTGGGGTCACAGTT
		-211	5.6	AATTGTGATAAATATCACATAT

Position: -27 Score: 3.7 Sequence: ATATGTATTCTCGTTTACATTG Locus tag: PROVRETT_03986
	PROVRETT_03986	-27	3.7	ATATGTATTCTCGTTTACATTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: fxsA
Ortholog function: suppressor of F plamsid exlusion of phage T7
Escherichia coli str. K-12 substr. MG1655	b4140	-202	4.1	TACCGTAATCTGGATCACTTTA
		-152	4.3	ATTTGTGAAATAGATCACCGCT
Salmonella typhimurium LT2	STM4327	-203	4.1	TACCGTAATCTGGATCACTTAA
		-153	4.1	TTTTGTGAAATAGGTCACCGCT
Citrobacter koseri ATCC BAA-895	CKO_03695	-156	4.1	TTTTGTGAAATAGGTCACCGCT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04530	-140	3.7	ATCTGTGAAATGGGTCACCGCT
Enterobacter sp. 638	Ent638_0327	-151	3.8	ATCTGTGAAATGAATCACCGCT
Erwinia amylovora ATCC 49946	EAM_0417	-161	3.9	ATATCTGTTCCAGGTCACATTG
Yersinia pestis KIM	y0607	-245	4.8	ATCTGTGATTGCTCTCACACTT
Serratia proteamaculans 568	Spro_0407	-117	4.9	TTCTGTGATCTCATTCACGTTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0623	-245	3.7	AACTGTGATTGTAGTCACGAGT
		-185	3.6	AAATGTGCAAAGGCGCACCCAT
Edwardsiella tarda EIB202	ETAE_0312	-189	4.6	ATCTGTGATAATACTCACAGAT
Proteus mirabilis HI4320	PMI2545	-188	4.7	TTTTGTGATCTATCTCATGGAT
Photorhabdus luminescens subsp. laumondii TTO1	plu4136	-188	5.6	ATATGTGATATTTATCACAATT

Position: -269 Score: 4.2 Sequence: ATCTGTAATCCAACGCACAATT Position: -177 Score: 5.1 Sequence: TTTTGTGATTCTCATCACGATT Locus tag: PROVRETT_04010
	PROVRETT_04010	-269	4.2	ATCTGTAATCCAACGCACAATT
		-177	5.1	TTTTGTGATTCTCATCACGATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpA
Ortholog function: sn-glycerol-3-phosphate dehydrogenase subunit A
Escherichia coli str. K-12 substr. MG1655	b2241	-165	4.6	AAATGTGAATTGCCGCACACAT
Salmonella typhimurium LT2	STM2284	-163	5	TAATGTGAATTACAGCACATAT
Citrobacter koseri ATCC BAA-895	CKO_00536	-163	4.7	TAATGTGAATTACAGCACAGAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02647	-165	4.3	TACTGTGAAACATCGCACAATT
		-115	3.8	ATGTGAGCACGAAATCACATAA
Enterobacter sp. 638	Ent638_2805	-163	4.1	TACTGTGAATCAACGCACAGAT
Yersinia pestis KIM	y0404	-231	3.6	AATTGTTACCTATTTTATGAAA
		-155	4.4	ACCTGTGATTTTGATCACAATC
Serratia proteamaculans 568	Spro_0200	-231	3.6	CGCTGTGATGGATGGCGCAATT
		-138	4.9	AATCGTGATTATGATCACATTC
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4165	-148	5.1	TTTAGTGATGCAAATCACACTT
Edwardsiella tarda EIB202	ETAE_3115	-247	4	TACTGTGAGAGATCGCTCATAT
		-142	4.8	TAGAGTGATTTTGATCACATTG
Proteus mirabilis HI4320	PMI3592	-262	3.7	TACTGTGAAGTAATACTCAGTT
		-170	5.5	ATTTGTGATTAGTATCACATAT

Position: -49 Score: 4.6 Sequence: TTTTTTAATCAAAATCACATAA Locus tag: PROVRETT_04107
	PROVRETT_04107	-49	4.6	TTTTTTAATCAAAATCACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltD
Ortholog function: glutamate synthase, small subunit
Escherichia coli str. K-12 substr. MG1655	b3213	-199	4.2	AATTTTGCGCTAAAGCACATTT
Salmonella typhimurium LT2	STM3331	-288	3.7	ATCTGTGCTACAGCACACTTTT
Enterobacter sp. 638	Ent638_3657	-298	3.9	GATAGTGAGTCAGATCACACTC
Edwardsiella tarda EIB202	ETAE_0526	-278	4.9	AACTGTGATGCAGCCCACATTT
Photorhabdus luminescens subsp. laumondii TTO1	plu4010	-241	4	ATATTTGACCTGATTTATATTT

Position: -227 Score: 4.3 Sequence: TATTGTTATTCACATCTTATTT Locus tag: PROVRETT_04126
	PROVRETT_04126	-227	4.3	TATTGTTATTCACATCTTATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: CKO_03591
Ortholog function: hypothetical protein
Salmonella typhimurium LT2	STM4440	-229	4.5	AACTGTAATACCCATCACACTT
		-162	3.8	TGCCGCGATAGATCTCACACTT
		-111	4.1	TTCTGTGGCGCAGATCACCTAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04633	-172	4.3	TGTTGTGATACATCTCACGCCA
		-121	4.2	ATATGTGGAGTCGATCACCTAA
Enterobacter sp. 638	Ent638_0424	-265	3.8	AAACCTTATCCGCGTCACACTT
		-189	4.6	TAGCGTGATATTCATCACGCAA
Erwinia amylovora ATCC 49946	EAM_0469	-156	3.8	TGATGTGAGTTGTCTCGCTTTG

Position: -109 Score: 4.3 Sequence: ACATATGATAAAAATCACAAAA Locus tag: PROVRETT_04141
	PROVRETT_04141	-109	4.3	ACATATGATAAAAATCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadH
Ortholog function: 2,4-dienoyl-CoA reductase [NADPH] (2,4-dienoyl coenzyme A reductase)
Escherichia coli str. K-12 substr. MG1655	b3081	-112	3.9	CTTTTTGAATCCCATCACAAAC
Salmonella typhimurium LT2	STM3219	-113	4.3	TTTTTTGAATCCCATCACAATC
Citrobacter koseri ATCC BAA-895	CKO_04487	-113	4.3	TTTTTTGAATCCCATCACAATC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03510	-111	3.9	TTCTTTGAATCCCATCACAATC
Enterobacter sp. 638	Ent638_3539	-111	3.9	ATCTTTGAATCCCATCACATTC
Erwinia amylovora ATCC 49946	EAM_0507	-169	3.8	AACCGTGACTGAGATCGCTAAA
Yersinia pestis KIM	y3589	-131	4	ATTCATGACGGCTATCACAATC
Serratia proteamaculans 568	Spro_4309	-126	4.2	ATTCATGACATCTATCACATTC
Proteus mirabilis HI4320	PMI3702	-213	3.8	TATTATTATATGATTAAAAAAT
		-103	3.8	TTCCATGATTAAGATCACAACT
Photorhabdus luminescens subsp. laumondii TTO1	plu3990	-161	4.3	TTTCATGACCTTCATCACATTC

Position: -208 Score: 4 Sequence: TTATGTATCCAGGGTCACATTT Locus tag: PROVRETT_04163
	PROVRETT_04163	-208	4	TTATGTATCCAGGGTCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhaS
Ortholog function: L-rhamnose operon regulatory protein RhaS
Escherichia coli str. K-12 substr. MG1655	b3905	-182	4.5	GAACGTGATGATGTTCACAATT
		-147	4.5	TGATGTGATGCTCACCGCATTT
Salmonella typhimurium LT2	STM4048	-182	4.3	GAACGTGATAGCGTTCACAGTT
		-147	4	CGGTGTGATGTCGTCCGCATTT
		-62	3.8	TAAGGTGAGGCCGATAACCCTT
Citrobacter koseri ATCC BAA-895	CKO_03099	-194	4.5	GAACGTGATAGCGTTCACAATT
		-34	4.3	ATTTCTGACATGTTTCTCATAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04214	-204	3.8	GACCGTGAGGGACATCACAGTT
Enterobacter sp. 638	Ent638_4066	-194	4.2	GAACGTGAGGGAGTTCACAGTT
Yersinia pestis KIM	y0590	-214	3.9	GAAAGTGAAACAGCTCACAGTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0441	-144	3.9	CGGTGTGATCCTTGCCACACTT

Position: -114 Score: 4.5 Sequence: AGGTGTGATATTAGTCATATAA Locus tag: PROVRETT_04305
	PROVRETT_04305	-114	4.5	AGGTGTGATATTAGTCATATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dsdC
Ortholog function: DNA-binding transcriptional dual regulator
Escherichia coli str. K-12 substr. MG1655	b2364	-115	3.9	TGGAGTGATTTACATCTAAAAA
		-85	4.6	AATTGAGATATGGTTCACTTTA
Salmonella typhimurium LT2	STM3800	-142	3.8	TGATGTAAATTGAATCAACTAT
		-124	4.5	CTATGTGATTTCCATCTAATAT
		-94	4.2	TTTTGCGATATGGTTCATTTTA
Citrobacter koseri ATCC BAA-895	CKO_00019	-32	3.9	AAGGGTGATTTGCATCCAATAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04079	-125	3.9	AAAGGTGATTTAGCTCTAAAAG
		-95	4.2	AAATATGCTATGGGTCAAATTA
Serratia proteamaculans 568	Spro_2451	-76	3.6	TTTAGCGACATGGGTCAACTTT
Proteus mirabilis HI4320	PMI0184	-199	3.6	TATTGTTAAACATATTGAATAT
		-117	4.4	ATAGGTGATCAGATGCACAAAT
Photorhabdus luminescens subsp. laumondii TTO1	plu1968	-124	4.4	TTCAGTGATACCGATCAAAATT
		-94	4.5	ATTTGCGATTTAAATCACTAAA

Position: -328 Score: 5.3 Sequence: AATTGTGATCTCATTAACATAA Locus tag: PROVRETT_04405
	PROVRETT_04405	-328	5.3	AATTGTGATCTCATTAACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hpaR
Ortholog function: 4-hydroxyphenylacetate catabolism
Yersinia pestis KIM	y2548	-253	5	ATTCGTGATCTTGATAACAATT
Serratia proteamaculans 568	Spro_0624	-224	5.2	ATTTGTGATCGTGATAACAAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu0991	-285	3.9	AATTTTAATTGTGATCTCAGTA
		-279	5	AATTGTGATCTCAGTAACAATA

Position: -125 Score: 4.7 Sequence: TTATGTTAATGAGATCACAATT Locus tag: PROVRETT_04406
	PROVRETT_04406	-125	4.7	TTATGTTAATGAGATCACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hpaG
Ortholog function: 4-hydroxyphenylacetate catabolism
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04789	-125	4.4	TTGTGTTAATCCGATCACAAAA
Serratia proteamaculans 568	Spro_0625	-123	5	TTTTGTTATCACGATCACAAAT
Photorhabdus luminescens subsp. laumondii TTO1	plu0990	-159	3.7	AATAATGATAAAAAACAAATTT
		-129	4.9	TATTGTTACTGAGATCACAATT

Position: -58 Score: 3.6 Sequence: TGGTGTGAGTCAGTTATCCTTA Locus tag: PROVRETT_04448
	PROVRETT_04448	-58	3.6	TGGTGTGAGTCAGTTATCCTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: epd
Ortholog function: D-erythrose 4-phosphate dehydrogenase
Escherichia coli str. K-12 substr. MG1655	b2927	-213	4.7	AAGTGTGATGTGAGTCAGATAA
Salmonella typhimurium LT2	STM3070	-213	5	AAATGTGATGCAGGTCAGATAA
Citrobacter koseri ATCC BAA-895	CKO_04297	-213	4.8	AAGTGTGATGCAGGTCAGATAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03356	-213	4.8	AAATGTGATGTGAGTCATATAG
Enterobacter sp. 638	Ent638_3340	-215	4.5	AAATGTGACGCAAGTCATATAG
Erwinia amylovora ATCC 49946	EAM_2813	-208	4.1	TTTTGTGACGCAGATCGAAAGT
Yersinia pestis KIM	y3309	-216	3.7	AATTGTGCCCTTTTTCAGGGAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3913	-194	4.1	TTTTATGACGCAGGTCACTCTT
Edwardsiella tarda EIB202	ETAE_2958	-233	4.9	AATTGTGATGCAATGCACGTTT
Proteus mirabilis HI4320	PMI0241	-253	4.4	AAATGTTAACAAGAGCACATTT

Position: -136 Score: 4.5 Sequence: ACATGTGATCATATTAACATAA Locus tag: PROVRETT_04491
	PROVRETT_04491	-136	4.5	ACATGTGATCATATTAACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cyoA
Ortholog function: cytochrome o ubiquinol oxidase subunit II
Yersinia pestis KIM	y1021	-137	4.5	ATCTGTGACCCCCTTAACATAA
Serratia proteamaculans 568	Spro_1090	-135	4.2	ATCTGTGACCCCCTTAACAGAA
Proteus mirabilis HI4320	PMI0108	-194	3.6	AAATTATAGTTAATTCACAATA
		-147	3.6	TTAATTACTTGTGATCACATTA
		-141	4.3	ACTTGTGATCACATTAACACAA

Position: -271 Score: 3.8 Sequence: TAATATGAACTTTGTCACTGTA Locus tag: PROVRETT_04508
	PROVRETT_04508	-271	3.8	TAATATGAACTTTGTCACTGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: caiF
Ortholog function: transcriptional activator for carnitine metabolism
Escherichia coli str. K-12 substr. MG1655	b0034	-134	3.8	AAGCAGGATTTAGCTCACACTT
Salmonella typhimurium LT2	STM0068	-134	3.8	AAGCACGATATTGCTCACACTA
Citrobacter koseri ATCC BAA-895	CKO_03349	-144	3.8	AAGCACGATTTCGCTCACACTA

Position: -327 Score: 4.2 Sequence: CTCAGTGATATAAATCACAGTT Position: -223 Score: 4.3 Sequence: TTTTGTGAGCTATATAAAAATC Position: -129 Score: 3.7 Sequence: AAAATTGACGTCATGCACATAG Locus tag: PROVRETT_04547
	PROVRETT_04547	-327	4.2	CTCAGTGATATAAATCACAGTT
		-223	4.3	TTTTGTGAGCTATATAAAAATC
		-129	3.7	AAAATTGACGTCATGCACATAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: cpdB
Ortholog function: 2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor
Escherichia coli str. K-12 substr. MG1655	b4213	-118	3.8	AACTGTGATAGTGTCATCATTT
		-85	3.8	AATTGTGGCATTCTTCACTGTT
Salmonella typhimurium LT2	STM4403	-145	3.7	TTCTGTGAACACTCGCAAAAAA
Citrobacter koseri ATCC BAA-895	CKO_03616	-25	4.2	TTTTGTGTTTCAGATCTAAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04607	-156	3.8	TTGTTTTATTTATATCGCATCA
		-87	3.7	TTTTCTGGCAAGATTCACATTT
		-35	4.2	TTCTGTGCTATCGCTCATAAAA
Enterobacter sp. 638	Ent638_0392	-34	4	TTTTGTGGCTTGGATCGAAAAA
Yersinia pestis KIM	y0653	-148	3.6	AACTGTGAGCGTCTACGCGTTA
		-116	3.8	TTTTCTGCCAAACTTCACACTT
		-63	4.4	TTTTGCGATACATATCGAATAT
Serratia proteamaculans 568	Spro_0453	-95	3.8	TTTTCTGCCACACTTCACAGTT

Position: -281 Score: 5.3 Sequence: TAATTTGATGGATATCACATTT Position: -229 Score: 5.3 Sequence: TAATGTGATTTGTAGCACATAA Locus tag: PROVRETT_04626
	PROVRETT_04626	-281	5.3	TAATTTGATGGATATCACATTT
		-229	5.3	TAATGTGATTTGTAGCACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: deoC
Ortholog function: 2-deoxyribose-5-phosphate aldolase
Escherichia coli str. K-12 substr. MG1655	b4381	-149	4.6	TTATTTGAACCAGATCGCATTA
		-96	4.5	AATTGTGATGTGTATCGAAGTG
Salmonella typhimurium LT2	STM4567	-133	4.9	TAATTTGATTCAGATCTCATTA
		-80	4.2	AACTGTGATGTATATCGAAGTG
Citrobacter koseri ATCC BAA-895	CKO_03410	-134	4.2	TTATTTGAAGTGGATCTCGTTA
		-81	4.2	AACTGTGATGTATATCGAAGTG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04837	-158	5.2	ATTTGTGATTTTAATCACGTTA
		-105	3.7	AACTGTGATGAATGTCGAAGTG
Enterobacter sp. 638	Ent638_0541	-151	4.6	AAATTTGAAGTGGATCTCATTA
		-98	3.7	AACTGTGATGAATGTCGAAGTG
Erwinia amylovora ATCC 49946	EAM_0615	-233	4.6	TGATGTGATAATTCTAACATTA
Yersinia pestis KIM	y3743	-169	3.7	TGCGGTGAGATGGATCTCAATT
Serratia proteamaculans 568	Spro_0660	-262	4.6	ATTTGTGAACGATATCGCGTTA
		-240	5.5	TTTTGTGATGGTCTTCACATAT
		-188	3.8	TAGTGTGACTGTGAACGCGAAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0727	-282	4.4	AAGTGTGAATGAATGCACAAAA
Proteus mirabilis HI4320	PMI2416	-267	4.4	ATATGTGAGTTACTTCGCAACT
		-135	5.6	TTTTGTGATTCTGATCACAATT
		-83	4.5	TATTGTGACAGAAAGCACATCT

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of Crp regulog to Providencia rettgeri DSM 1131

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --