Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of YiaJ regulog to Salmonella typhimurium LT2

Reference regulog properties
Source regulog: YiaJ - Enterobacteriales
Regulator type: Transcription factor
Regulator family: IclR
Regulation mode: repressor
Biological process: L-lyxose utilization
Effector: Ascorbate-6-phosphate
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Salmonella typhimurium LT2
Orthologous TF(s) STM3667
Regulated genes 2
Built upon 8 sites [see more]
Predicted regulatory interactions in Salmonella typhimurium LT2
Locus tag Position Score Sequence
Position: -168
Score: 6.2
Sequence: ATGCGAAATCTAGTTCCAAAT
Locus tag: STM3667
STM3667 -168 6.2 ATGCGAAATCTAGTTCCAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yiaJ
Ortholog function: transcriptional regulator of L-lyxose catabolism, IclR family
Escherichia coli str. K-12 substr. MG1655 b3574 -151 6.3 ATGCGAAACTTGATTTCAAAT
Salmonella typhimurium LT2 STM3667 -168 6.2 ATGCGAAATCTAGTTCCAAAT
Citrobacter koseri ATCC BAA-895 CKO_05032 -167 6.5 ATGCGAAATCTGATTTCAAAT
Position: -82
Score: 6
Sequence: ATTTGGAACTAGATTTCGCAT
Locus tag: STM3668
STM3668 -82 6 ATTTGGAACTAGATTTCGCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yiaK
Ortholog function: 2,3-diketo-L-gulonate dehydrogenase, NADH-dependent
Escherichia coli str. K-12 substr. MG1655 b3575 -70 6.4 ATTTGAAATCAAGTTTCGCAT
Salmonella typhimurium LT2 STM3668 -82 6 ATTTGGAACTAGATTTCGCAT
Citrobacter koseri ATCC BAA-895 CKO_05033 -72 6.5 ATTTGAAATCAGATTTCGCAT
Serratia proteamaculans 568 Spro_3933 -74 6.1 ATTTGAAATGCAATTCCGCAT
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