Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of GcvA regulog to Escherichia coli B

Reference regulog properties
Source regulog: GcvA - Enterobacteriales
Regulator type: Transcription factor
Regulator family: LysR
Regulation mode: dual
Biological process: Glycine metabolism
Effector: Glycine
Phylum: Gammaproteobacteria
Propagated regulon:
Target genome Escherichia coli B
Orthologous TF(s) EcolBDRAFT_0597
Regulated genes 2
Built upon 34 sites [see more]
Predicted regulatory interactions in Escherichia coli B
Locus tag Position Score Sequence
Position: -338
Score: 5.1
Sequence: ATTATATTTTCTAAT
Locus tag: EcolBDRAFT_2406
EcolBDRAFT_2406 -338 5.1 ATTATATTTTCTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gcvT
Ortholog function: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
Citrobacter koseri ATCC BAA-895 CKO_04269 -371 5.3 TTGAAATAATCTAAT
-339 4.5 ATTAGTTTTTTTAAT
Edwardsiella tarda EIB202 ETAE_2941 -349 4.8 GTGAAATATTCTAAT
-316 4.2 ATTAGTTTTTCTCAT
Enterobacter sp. 638 Ent638_3324 -369 5.2 TTGAAATATTCTAAT
-337 5.1 ATTAGATTATCTAAT
Erwinia amylovora ATCC 49946 EAM_2791 -340 5.2 TTGAAATATTCTAAT
-308 4.5 ATTAGTTTAAATAAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0743 -338 5.2 TTGAAAAAATCTAAT
-306 5.1 ATTATATTATCTAAT
Escherichia coli str. K-12 substr. MG1655 b2905 -370 5.3 TTGAAATAAACTAAT
-338 5.1 ATTATATTTTCTAAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03341 -372 5.2 TTGAAATATTCTAAT
-340 4.8 ATTAGATTTATTAAT
Photorhabdus luminescens subsp. laumondii TTO1 plu3598 -372 5 CTGAAAAAATCTAAT
-340 4 ATAACTTTTTCTCAT
Proteus mirabilis HI4320 PMI2021 -427 5 CTGAAAAAATCTAAT
Salmonella typhimurium LT2 STM3055 -373 5.3 TTGAAATAATCTAAT
-341 5.1 ATTATATTTTCTAAT
Serratia proteamaculans 568 Spro_3916 -396 4.9 ATTAGTTTTTCTAAT
Yersinia pestis KIM y3294 -363 5.3 TTGAAATAATCTAAT
-304 4.4 TTTAAAAAGTTTAAT
Position: -71
Score: 5.5
Sequence: ATTAAAAAAACTAAT
Locus tag: EcolBDRAFT_0597
EcolBDRAFT_0597 -71 5.5 ATTAAAAAAACTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gcvA
Ortholog function: Glycine cleavage system transcriptional activator GcvA
Citrobacter koseri ATCC BAA-895 CKO_04171 -71 5.5 ATTAAAAAAACTAAT
Edwardsiella tarda EIB202 ETAE_0719 -67 5.4 ATAAAAAAAACTAAT
Enterobacter sp. 638 Ent638_3254 -71 5.4 ATAAAAAAAACTAAT
Erwinia amylovora ATCC 49946 EAM_2719 -71 5.4 ATAAAAAAAACTAAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1015 -193 5.3 ATTACAAAAACTAAT
Escherichia coli str. K-12 substr. MG1655 b2808 -71 5.5 ATTAAAAAAACTAAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03159 -72 5.4 ATAAAAAAAACTAAT
Photorhabdus luminescens subsp. laumondii TTO1 plu0652 -65 5.3 ATTACAAAAACTAAT
Proteus mirabilis HI4320 PMI2301 -66 5.4 ATAAAAAAAACTAAT
Salmonella typhimurium LT2 STM2982 -70 5.5 ATTAAAAAAACTAAT
Serratia proteamaculans 568 Spro_3805 -116 5.5 ATTAAAAAAACTAAT
Yersinia pestis KIM y3154 -70 5.3 ATTATAAAAACTAAT
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