Propagation of LexA regulog to Salmonella enterica subsp. enterica serovar Typhi str. E98-0664
| Source regulog: | LexA - Enterobacteriales |
| Regulator type: | Transcription factor |
| Regulator family: | LexA |
| Regulation mode: | repressor |
| Biological process: | SOS response |
| Effector: | DNA damage |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Salmonella enterica subsp. enterica serovar Typhi str. E98-0664 |
| Orthologous TF(s) | SentesTyph_010100020373, SentesTyph_010100014024 |
| Regulated genes | 20 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -39
Score: 6.1 Sequence: AACTGTATATATATCCAGTA
Locus tag: SentesTyph_010100000105
|
||||
| SentesTyph_010100000105 | -39 | 6.1 | AACTGTATATATATCCAGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dinI | ||||
| Ortholog function: DNA damage-inducible protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1061 | -39 | 5.6 | ACCTGTATAAATAACCAGTA |
| Salmonella typhimurium LT2 | STM1162 | -39 | 6.1 | AACTGTATATATATCCAGTA |
| Citrobacter koseri ATCC BAA-895 | CKO_02002 | -39 | 5.9 | AACTGTATAAATACACAGTA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01073 | -39 | 5.9 | TACTGTATAAATAACCAGTA |
| Enterobacter sp. 638 | Ent638_1575 | -39 | 5.8 | GACTGTATAAATAAACAGTA |
| Erwinia amylovora ATCC 49946 | EAM_1429 | -38 | 5.8 | AACTGTATATATTTACAGTT |
| Yersinia pestis KIM | y1747 | -41 | 6.1 | TACTGTATAAATAAACAGTA |
| Serratia proteamaculans 568 | Spro_1895 | -39 | 6 | AACTGTATAAATATCCAGTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1786 | -38 | 5.9 | AACTGTATAAATAAACAGTT |
| Edwardsiella tarda EIB202 | ETAE_2072 | -42 | 5.7 | AGCTGTATATATTTACAGTA |
|
Position: -84
Score: 5.7 Sequence: TACTGTATGAGCATACAGTA
Locus tag: SentesTyph_010100001296
|
||||
| SentesTyph_010100001296 | -84 | 5.7 | TACTGTATGAGCATACAGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: recA | ||||
| Ortholog function: Recombinase A | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2699 | -79 | 5.7 | TACTGTATGAGCATACAGTA |
| Salmonella typhimurium LT2 | STM2829 | -84 | 5.7 | TACTGTATGAGCATACAGTA |
| Citrobacter koseri ATCC BAA-895 | CKO_04050 | -96 | 5.5 | TACTGTATGACTGTACAGTA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03031 | -90 | 5.8 | TACTGTATGACCATACAGTA |
| Enterobacter sp. 638 | Ent638_3174 | -92 | 5.9 | TACTGTATGACTATACAGTA |
| Erwinia amylovora ATCC 49946 | EAM_2640 | -88 | 6.1 | TACTGTATGATTATACAGTA |
| Yersinia pestis KIM | y0881 | -102 | 5.6 | TACTGTATGATTGTACAGTA |
| Serratia proteamaculans 568 | Spro_0841 | -100 | 5.8 | TACTGTATGACCATACAGTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3369 | -101 | 5.7 | TGCTGTATGTGTATACAGTA |
| Edwardsiella tarda EIB202 | ETAE_2861 | -63 | 5.7 | TACTGTATGAGCATACAGTA |
| Proteus mirabilis HI4320 | PMI0375 | -102 | 6.1 | TACTGTATGATTATACAGTA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1249 | -100 | 5.8 | TGCTGTATGATTATACAGTA |
|
Position: -71
Score: 4.8 Sequence: ATCTGGATAAACATCCAGTC
Locus tag: SentesTyph_010100004260
|
||||
| SentesTyph_010100004260 | -71 | 4.8 | ATCTGGATAAACATCCAGTC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ruvA | ||||
| Ortholog function: Holliday junction helicase subunit A | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1861 | -69 | 5 | CGCTGGATATCTATCCAGCA |
| Salmonella typhimurium LT2 | STM1895 | -71 | 4.8 | ATCTGGATAAACATCCAGTC |
| Citrobacter koseri ATCC BAA-895 | CKO_01099 | -70 | 4.6 | GGCTGGATATCTATCCAGCC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02376 | -69 | 4.6 | GGCTGGATATCTATCCAGCC |
| Enterobacter sp. 638 | Ent638_2430 | -69 | 4.6 | GGCTGGATAAACATCCAGCC |
| Erwinia amylovora ATCC 49946 | EAM_2004 | -68 | 5 | AGCTGGATATCTATCCAGCT |
| Yersinia pestis KIM | y2253 | -244 | 4.4 | GGCTGGATATCCATCCAGCC |
| Serratia proteamaculans 568 | Spro_2777 | -91 | 4.6 | GGCTGGATATTCATCCAGCC |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2492 | -84 | 4.9 | TGCTGGATATTCATCCAGCC |
| Edwardsiella tarda EIB202 | ETAE_1439 | -74 | 4.6 | GGCTGGATATTCATCCAGCC |
| Proteus mirabilis HI4320 | PMI1115 | -68 | 4.5 | GGCTGGATATACGTCCAGCT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2111 | -85 | 4.6 | GGCTGGATATGCATCCAGCT |
|
Position: -35
Score: 5.4 Sequence: TACTGTACACTTAAACAGTA
Locus tag: SentesTyph_010100004610
|
||||
| SentesTyph_010100004610 | -35 | 5.4 | TACTGTACACTTAAACAGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dinB | ||||
| Ortholog function: DNA polymerase IV (EC 2.7.7.7) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0231 | -34 | 4.8 | CACTGTATACTTTACCAGTG |
| Salmonella typhimurium LT2 | STM0313 | -35 | 5.4 | TACTGTACACTTAAACAGTA |
| Citrobacter koseri ATCC BAA-895 | CKO_02960 | -35 | 5.8 | TACTGTATACTTAAACAGTA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00247 | 1 | 5.2 | TGCTGTATGGGTATACAGTG |
| Enterobacter sp. 638 | Ent638_0762 | -37 | 5.8 | TACTGTATACTTATCCAGTA |
| Erwinia amylovora ATCC 49946 | EAM_0894 | -36 | 5.4 | GACTGTATACTTATCCAGTA |
| Yersinia pestis KIM | y0959 | -41 | 5.3 | GACTGTATACTTATACAGCT |
| Serratia proteamaculans 568 | Spro_0962 | -35 | 5.7 | GCCTGTATATTTATACAGTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3468 | -36 | 5.5 | ATCTGTATATTCATACAGTA |
| Edwardsiella tarda EIB202 | ETAE_0788 | -42 | 5.6 | TGCTGTATACTCATACAGTA |
| Proteus mirabilis HI4320 | PMI0362 | -39 | 6.1 | TACTGTATATTTAAACAGTA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1239 | -42 | 4.8 | TTATGTATGTTTATACAGTT |
|
Position: -35
Score: 6.1 Sequence: TACTGTATATAAAAACAGTA
Locus tag: SentesTyph_010100005055
|
||||
| SentesTyph_010100005055 | -35 | 6.1 | TACTGTATATAAAAACAGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: umuD | ||||
| Ortholog function: DNA polymerase V, subunit UmuD | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1183 | -39 | 6.1 | TACTGTATATAAAAACAGTA |
| Salmonella typhimurium LT2 | STM1998 | -35 | 6.1 | TACTGTATATAAAAACAGTA |
| Citrobacter koseri ATCC BAA-895 | CKO_01842 | -38 | 5.9 | TACTGTATATATAATCAGTA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01438 | -40 | 5.8 | TACTGTATATAAAAACAGTG |
| Enterobacter sp. 638 | Ent638_2213 | -34 | 5.9 | TACTGTATGTAAAAACAGTA |
|
Position: -95
Score: 4.8 Sequence: TACTGATGTTATATACAGGT
Locus tag: SentesTyph_010100005277
|
||||
| SentesTyph_010100005277 | -95 | 4.8 | TACTGATGTTATATACAGGT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yjiW | ||||
| Ortholog function: LexA regulated, putative SOS response | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4347 | -95 | 5 | TACTGATGATATATACAGGT |
| Salmonella typhimurium LT2 | STM4523 | -94 | 4.4 | TACTGATGTTATGTACAGGT |
|
Position: -41
Score: 6.2 Sequence: TACTGTATGAATATACAGTA
Locus tag: SentesTyph_010100005352
|
||||
| SentesTyph_010100005352 | -41 | 6.2 | TACTGTATGAATATACAGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sulA | ||||
| Ortholog function: Cell division inhibitor sulA | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0958 | -42 | 5.6 | TACTGTACATCCATACAGTA |
| Salmonella typhimurium LT2 | STM1071 | -41 | 6.2 | TACTGTATGAATATACAGTA |
| Citrobacter koseri ATCC BAA-895 | CKO_02110 | -41 | 6 | TACTGTATATCCATACAGTA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00987 | -39 | 6 | TACTGTATATGCATACAGTA |
| Enterobacter sp. 638 | Ent638_1470 | -34 | 6.2 | TACTGTATATTCATACAGTA |
| Erwinia amylovora ATCC 49946 | EAM_1378 | -40 | 5.7 | TACTGTATATCCATACAGTC |
| Yersinia pestis KIM | y2734 | -39 | 6.1 | TACTGTATATACATACAGCA |
| Serratia proteamaculans 568 | Spro_1755 | -41 | 5.9 | TACTGTATAAACATACAGTG |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1752 | -41 | 6.1 | TACTGTATGTTCATACAGTA |
| Edwardsiella tarda EIB202 | ETAE_1269 | -115 | 5.9 | TACTGTATAAGCATACAGTA |
| Proteus mirabilis HI4320 | PMI0786 | -39 | 6.3 | TACTGTATATACATACAGTA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1776 | -40 | 6 | TACTGTATATTAATACAGTT |
|
Position: -6
Score: 5.5 Sequence: TACTGGATGAATAACCAGTT
Locus tag: SentesTyph_010100007154
|
||||
| SentesTyph_010100007154 | -6 | 5.5 | TACTGGATGAATAACCAGTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cho | ||||
| Ortholog function: endonuclease of nucleotide excision repair | ||||
| Enterobacter sp. 638 | Ent638_1703 | -33 | 5 | CACTGTATAGCTGAACAGTA |
| Erwinia amylovora ATCC 49946 | EAM_1613 | -33 | 5.3 | TACTGTTCGGATAAACAGTA |
|
Position: -34
Score: 5.2 Sequence: TACTGTATGAATTGACAGTT
Locus tag: SentesTyph_010100012444
|
||||
| SentesTyph_010100012444 | -34 | 5.2 | TACTGTATGAATTGACAGTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ydjM | ||||
| Ortholog function: membrane-bound metal-dependent hydrolase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1728 | -52 | 4.4 | CACTGTATAAAAATCCTATA |
| -34 | 4.7 | TACTGTACGTATCGACAGTT | ||
| Salmonella typhimurium LT2 | STM1321 | -52 | 4.4 | TACTGTATAAAAACCCTATA |
| -34 | 5.2 | TACTGTATGAATTGACAGTT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_01754 | -52 | 4.4 | TACTGTATAAAAACCCTATA |
| -34 | 5.2 | TACTGTATGAATTGACAGTT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01239 | -34 | 5 | TACTGTATGAATCGACAGTT |
| Enterobacter sp. 638 | Ent638_1715 | -34 | 5.2 | TACTGTATGAATTGACAGTT |
| Erwinia amylovora ATCC 49946 | EAM_1619 | -56 | 4.3 | TACTGTATATATTCCCTATA |
| -38 | 4.8 | TACTGGATGCATTGACAGTT | ||
| Yersinia pestis KIM | y1879 | -39 | 5 | TACTGGATAAATCAACAGCT |
| Serratia proteamaculans 568 | Spro_2124 | -39 | 5.4 | TACTGGATAAATTAACAGTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2409 | -36 | 5.4 | TACTGTATAAAATAACAGTT |
| Edwardsiella tarda EIB202 | ETAE_1569 | -109 | 5.5 | TTCTGTATATTTATACAGCA |
| Proteus mirabilis HI4320 | PMI1020 | -54 | 5.2 | CACTGTATAAATGAACAGCA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2679 | -37 | 5 | GACTGTATGGATAGACAGTT |
|
Position: -47
Score: 5.2 Sequence: AACTGTATATACTCACAGCA
Position: -26
Score: 4.9 Sequence: GACTGTATATACACCCAGGG
Locus tag: SentesTyph_010100014024
|
||||
| SentesTyph_010100014024 | -47 | 5.2 | AACTGTATATACTCACAGCA | |
| -26 | 4.9 | GACTGTATATACACCCAGGG | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lexA | ||||
| Ortholog function: SOS-response repressor and protease LexA (EC 3.4.21.88) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4043 | -47 | 5.1 | TGCTGTATATACTCACAGCA |
| -26 | 5.2 | AACTGTATATACACCCAGGG | ||
| Salmonella typhimurium LT2 | STM4237 | -47 | 5.2 | AACTGTATATACTCACAGCA |
| -26 | 4.4 | GATTGTATATACACCCAGGG | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03872 | -47 | 5 | AGCTGTATATACTCACAGCA |
| -26 | 5.2 | AACTGTATATACACCCAGGG | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04431 | -47 | 5 | AGCTGTATATACTCACAGCA |
| -26 | 5.2 | AACTGTATATACACCCAGGG | ||
| Enterobacter sp. 638 | Ent638_0247 | -47 | 5 | GACTGTATATACTCACAGCA |
| -26 | 5.2 | AACTGTATATACACCCAGGG | ||
| Erwinia amylovora ATCC 49946 | EAM_0264 | -46 | 4.9 | ACCTGTATATACTCACAGTC |
| -26 | 5 | GACTGTATAAACAACCAGGG | ||
| Yersinia pestis KIM | y0572 | -47 | 5 | AGCTGTATATACTCACAGCA |
| -26 | 5.4 | AACTGTATAAACAAACAGGG | ||
| Serratia proteamaculans 568 | Spro_4460 | -47 | 5 | ACCTGTATATACTCACAGCA |
| -26 | 5.2 | GACTGTATAAACAAACAGGG | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0630 | -47 | 5 | ACCTGTATATACTCACAGCA |
| -26 | 5 | GACTGTATAAACAACCAGGG | ||
| Edwardsiella tarda EIB202 | ETAE_0230 | -47 | 5 | ACCTGTATATACTCACAGCA |
| -26 | 5 | AACTGTATAAACGAACAGGG | ||
| Proteus mirabilis HI4320 | PMI2749 | -47 | 4.9 | ACCTGTATATACTCACAGTC |
| -26 | 5.2 | GACTGTATAAACAAACAGGG | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4374 | -26 | 5.2 | GACTGTATAAACAAACAGGG |
|
Position: -68
Score: 5.6 Sequence: TACTGTATAAAAAACCAGTT
Position: -46
Score: 5.3 Sequence: TACTGTATTTAATTACAGTC
Locus tag: SentesTyph_010100017493
|
||||
| SentesTyph_010100017493 | -68 | 5.6 | TACTGTATAAAAAACCAGTT | |
| -46 | 5.3 | TACTGTATTTAATTACAGTC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: recN | ||||
| Ortholog function: DNA repair protein RecN | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2616 | -68 | 5.7 | TACTGTATATAAAACCAGTT |
| -46 | 4.9 | TACTGTACACAATAACAGTA | ||
| -28 | 4.7 | TAATGGTTTTTCATACAGGA | ||
| Salmonella typhimurium LT2 | STM2684 | -68 | 5.6 | TACTGTATAAAAAACCAGTT |
| -46 | 5.3 | TACTGTATTTAATTACAGTC | ||
| -28 | 4.5 | TCATGGTTTTTCATACAGGA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03938 | -68 | 5.6 | TACTGTATAAAAAACCAGTT |
| -46 | 5.1 | TACTGTATGTAATCACAGTC | ||
| -28 | 4.5 | TCATGGTTTTTCATACAGGA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02938 | -68 | 5.2 | TACTGGATAAAAAACCAGTC |
| -46 | 5.2 | TACTGTACGAAAACACAGTA | ||
| -28 | 4.9 | TATTGGTTTTTCATACAGGA | ||
| Enterobacter sp. 638 | Ent638_3096 | -68 | 5.6 | TACTGTATAAAAAACCAGTT |
| -46 | 5.8 | TACTGTATAGAAATACAGTT | ||
| Erwinia amylovora ATCC 49946 | EAM_2529 | -68 | 5.7 | TACTGTTTATAAAACCAGTA |
| -46 | 4.3 | TACTGTATGAAAAACCATAT | ||
| -28 | 4.8 | ATCTGTGTTTTCATACAGGA | ||
| Yersinia pestis KIM | y3075 | 39 | 5.5 | TACTGTATATAAAACCAGTC |
| 61 | 4.5 | TACTGTGTTCAAATACAGAC | ||
| Serratia proteamaculans 568 | Spro_3686 | -68 | 5.5 | TACTGTATATAAAACCAGTC |
| -46 | 5 | TACTGTATGAAACCACAGTT | ||
| -28 | 4.5 | TTATGTATTTATACACAGGA | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0840 | -61 | 5.7 | TACTGTATATAAAACCAGTT |
| -39 | 5.4 | TACTGTATGTAAACACAGTC | ||
| Edwardsiella tarda EIB202 | ETAE_2737 | -68 | 5.6 | TACTGTATAAAAAACCAGTT |
| -46 | 4.6 | TACTGGCATTAAACACAGTA | ||
| Proteus mirabilis HI4320 | PMI1902 | -66 | 5.6 | TACTGTATAAAAAACCAGTT |
| -44 | 5.1 | TACTGTATGTAATTACAGAT | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3374 | -68 | 5.6 | TACTGTATAAAAAACCAGTT |
| -46 | 4.8 | TACTGTATGAAGATACAGAG | ||
| -28 | 4.5 | AGGTGTTTTTATACACAGGA | ||
|
Position: -34
Score: 4.8 Sequence: TAGTGGCTGTTTATACAGTA
Locus tag: SentesTyph_010100018798
|
||||
| SentesTyph_010100018798 | -34 | 4.8 | TAGTGGCTGTTTATACAGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dinG | ||||
| Ortholog function: ATP-dependent helicase DinG/Rad3 | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0799 | -34 | 4.9 | TATTGGCTGTTTATACAGTA |
| Salmonella typhimurium LT2 | STM0821 | -34 | 4.8 | TAGTGGCTGTTTATACAGTA |
| Citrobacter koseri ATCC BAA-895 | CKO_02329 | -34 | 4.8 | TAGTGGCTGTTTATACAGTA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00831 | -33 | 4.8 | TAGTGGCTGTTTATACAGTA |
| Enterobacter sp. 638 | Ent638_1289 | -34 | 4.8 | TAGTGGCTGTTTATACAGTA |
| Erwinia amylovora ATCC 49946 | EAM_1250 | -43 | 4.8 | TACTGTGCAAAAATACAGCC |
|
Position: -39
Score: 5.9 Sequence: TACTGTGTTTATATACAGTA
Locus tag: SentesTyph_010100021600
|
||||
| SentesTyph_010100021600 | -39 | 5.9 | TACTGTGTTTATATACAGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dinI | ||||
| Ortholog function: DNA damage-inducible protein | ||||
| Salmonella typhimurium LT2 | STM2621 | -39 | 5.7 | TACTGTGTTTATATACAGTG |
| Salmonella typhimurium LT2 | STM1019 | -39 | 5.7 | TACTGTGTTTATATACAGTG |
| Citrobacter koseri ATCC BAA-895 | CKO_01890 | -25 | 6.1 | TACTGTATAaAaATACAGTA |
| Enterobacter sp. 638 | Ent638_2256 | -38 | 5.5 | CACTGTATAAATGTACAGTT |
|
Position: -41
Score: 5.7 Sequence: TACTGTACATTAATACAGTA
Locus tag: SentesTyph_010100023260
|
||||
| SentesTyph_010100023260 | -41 | 5.7 | TACTGTACATTAATACAGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sbmC | ||||
| Ortholog function: DNA gyrase inhibitor | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2009 | -34 | 6.1 | TACTGTATATAAAAACAGTA |
| Salmonella typhimurium LT2 | STM2061 | -41 | 5.5 | TACTGTACATTCATACAGCA |
| Citrobacter koseri ATCC BAA-895 | CKO_00775 | -157 | 5.7 | TGCTGTGTTTATATACAGTA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02467 | -42 | 5.8 | AGCTGTATATTCATACAGTA |
| Enterobacter sp. 638 | Ent638_2577 | -35 | 5.3 | TAGTGTATAAATACACAGTA |
|
Position: -167
Score: 5.7 Sequence: ACCTGTTTGAATATACAGTA
Locus tag: SentesTyph_010100025030
|
||||
| SentesTyph_010100025030 | -167 | 5.7 | ACCTGTTTGAATATACAGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ssb | ||||
| Ortholog function: single-strand binding protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4059 | -170 | 5.5 | ACCTGAATGAATATACAGTA |
| Salmonella typhimurium LT2 | STM4256 | -167 | 5.7 | ACCTGTTTGAATATACAGTA |
| Citrobacter koseri ATCC BAA-895 | CKO_03842 | -168 | 5.3 | ACCTGAATGGATATACAGTA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04446 | -166 | 5.5 | ACCTGAATGAATATACAGTA |
| Enterobacter sp. 638 | Ent638_0262 | -165 | 5.7 | ACCTGTTTGAATATACAGTA |
| Erwinia amylovora ATCC 49946 | EAM_0308 | -171 | 4.5 | GCCTGAATGGATAACCAGTG |
| Yersinia pestis KIM | y0582 | -158 | 4.8 | ACCTGAATGGATATCCAGTG |
| Serratia proteamaculans 568 | Spro_4439 | -157 | 5.2 | ACCTGAATGAATATCCAGTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3690 | -158 | 5.5 | AACTGAATGAATATCCAGTA |
|
Position: -100
Score: 5.7 Sequence: TACTGTATATTCAAACAGGT
Locus tag: SentesTyph_010100025035
|
||||
| SentesTyph_010100025035 | -100 | 5.7 | TACTGTATATTCAAACAGGT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: uvrA | ||||
| Ortholog function: excinuclease ABC subunit A | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4058 | -103 | 5.5 | TACTGTATATTCATTCAGGT |
| Salmonella typhimurium LT2 | STM4254 | -100 | 5.7 | TACTGTATATTCAAACAGGT |
| Citrobacter koseri ATCC BAA-895 | CKO_03843 | -102 | 5.3 | TACTGTATATCCATTCAGGT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04445 | -105 | 5.5 | TACTGTATATTCATTCAGGT |
| Enterobacter sp. 638 | Ent638_0261 | -100 | 5.7 | TACTGTATATTCAAACAGGT |
| Erwinia amylovora ATCC 49946 | EAM_0307 | -101 | 4.5 | CACTGGTTATCCATTCAGGC |
| Yersinia pestis KIM | y0580 | -318 | 4.8 | CACTGGATATCCATTCAGGT |
| Serratia proteamaculans 568 | Spro_4440 | -140 | 5.2 | TACTGGATATTCATTCAGGT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3689 | -107 | 5.5 | TACTGGATATTCATTCAGTT |
| Edwardsiella tarda EIB202 | ETAE_3184 | -92 | 5.3 | TACTGGATATCCATTCAGTT |
| Proteus mirabilis HI4320 | PMI2746 | -84 | 5.3 | TACTGTATATCCATTCAGCT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4350 | -209 | 5.3 | TACTGTATATCTAATCAGTC |
|
Position: -93
Score: 5.6 Sequence: TACTGTTTTTTCATCCAGTA
Locus tag: SentesTyph_010100028005
|
||||
| SentesTyph_010100028005 | -93 | 5.6 | TACTGTTTTTTCATCCAGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: uvrB | ||||
| Ortholog function: Excinuclease ABC subunit B | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0779 | -94 | 5.6 | AACTGTTTTTTTATCCAGTA |
| Salmonella typhimurium LT2 | STM0798 | -93 | 5.6 | TACTGTTTTTTCATCCAGTA |
| Citrobacter koseri ATCC BAA-895 | CKO_02348 | -93 | 5.4 | CACTGTTTTTTCATCCAGTA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00804 | -95 | 5.7 | CACTGTTTAAATATCCAGTA |
| Enterobacter sp. 638 | Ent638_1271 | -95 | 5.4 | CACTGGATTTACATCCAGTA |
| Erwinia amylovora ATCC 49946 | EAM_1216 | -96 | 4.7 | AGCTGTGATTATATCCAGTG |
| Yersinia pestis KIM | y3026 | -97 | 5.3 | AGCTGGTTTTATATCCAGTA |
| Serratia proteamaculans 568 | Spro_1317 | -130 | 5.3 | AGCTGGTTTTATATCCAGTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2820 | -232 | 5.6 | TgCTGTtTtTATATcCAGTA |
| Edwardsiella tarda EIB202 | ETAE_2547 | -106 | 5.2 | AGCTGGGTAAATATCCAGTA |
| Proteus mirabilis HI4320 | PMI0607 | -51 | 5.3 | AGCTGGATTTTTATCCAGTA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1491 | -56 | 5.3 | AGCTGGTTTTATATCCAGTA |
|
Position: -37
Score: 5.5 Sequence: TACTGTATATAAACACAGGT
Locus tag: SentesTyph_010100034054
|
||||
| SentesTyph_010100034054 | -37 | 5.5 | TACTGTATATAAACACAGGT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yebG | ||||
| Ortholog function: SOS regulon DNA damage-inducible protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1848 | -37 | 5.3 | TACTGTATAAAATCACAGTT |
| Salmonella typhimurium LT2 | STM1882 | -37 | 5.5 | TACTGTATATAAACACAGGT |
| Citrobacter koseri ATCC BAA-895 | CKO_01118 | -38 | 4.8 | TGCTGTACATAATTACAGGT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02363 | -35 | 5.9 | TACTGTATAAAAATACAGTG |
| Enterobacter sp. 638 | Ent638_1887 | -33 | 5.3 | CACTGTATATAATTACAGTG |
| Erwinia amylovora ATCC 49946 | EAM_1993 | -35 | 5.7 | TACTGTATAAAAACACAGTT |
| Yersinia pestis KIM | y2530 | -47 | 5.2 | CACTGTGATTATATACAGTT |
| Serratia proteamaculans 568 | Spro_2803 | -44 | 6.1 | TACTGTATAAAAATACAGTA |
| Edwardsiella tarda EIB202 | ETAE_1833 | -31 | 5.8 | TACTGTATATAAAAACAGTG |
|
Position: -70
Score: 4.9 Sequence: TGCTGTTTTTATAAACAATG
Locus tag: SentesTyph_010100038681
|
||||
| SentesTyph_010100038681 | -70 | 4.9 | TGCTGTTTTTATAAACAATG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mug | ||||
| Ortholog function: DNA glycosylase, G/U mismatch specific | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3068 | -69 | 4.9 | TGCTGTTTTTATAAACAATG |
| Salmonella typhimurium LT2 | STM3212 | -70 | 4.9 | TGCTGTTTTTATAAACAATG |
| Citrobacter koseri ATCC BAA-895 | CKO_04467 | -70 | 4.7 | TGCTGTTTTTATAAACAACG |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03475 | -69 | 4.9 | TGCTGTTTTTATAAACAATG |
| Enterobacter sp. 638 | Ent638_3474 | -70 | 4.9 | TGCTGTTTTTATAAACAATG |