Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of XylR regulog to Geobacillus thermodenitrificans NG80-2

Reference regulog properties
Source regulog: XylR - Bacillales
Regulator type: Transcription factor
Regulator family: ROK
Regulation mode: repressor
Biological process: Xylose utilization
Effector: Xylose
Phylum: Firmicutes
Propagated regulon:
Target genome Geobacillus thermodenitrificans NG80-2
Orthologous TF(s) GTNG_2360
Regulated genes 2
Built upon 28 sites [see more]
Predicted regulatory interactions in Geobacillus thermodenitrificans NG80-2
Locus tag Position Score Sequence
Position: -95
Score: 6.3
Sequence: ACTTTGTTTATATGATAGACAAACA
Locus tag: GTNG_1757
GTNG_1757 -95 6.3 ACTTTGTTTATATGATAGACAAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: xylA
Ortholog function: Xylose isomerase (EC 5.3.1.5)
Bacillus subtilis subsp. subtilis str. 168 BSU17600 -100 6.6 AGTTAGTTTGTTTAAACAACAAACT
Bacillus amyloliquefaciens FZB42 RBAM_017350 -101 6.1 AGTTAGTTTGTTTGGGCAACAAACT
Bacillus pumilus SAFR-032 BPUM_1829 -47 5.9 AGTTTGTTGAATCAACTTACAAAGT
Bacillus licheniformis DSM 13 BLi04048 -69 6.4 AGTTAGTTTAATGGTTAAACAAACA
Geobacillus kaustophilus HTA426 GK1875 -87 6.3 ACTTTGTTTATATGATAGACAAACA
Bacillus halodurans C-125 BH2757 -102 6.7 AGTTTGTCTATTGAATAAACTAAGT
Bacillus clausii KSM-K16 ABC0572 -45 6.3 ACTTAGTTTAAATAATAAACAAACC
Oceanobacillus iheyensis HTE831 OB3119 -44 6.7 ACTTTGTTTGTTAGATAAACAAACA
Paenibacillus sp. JDR-2 Pjdr2_5159 -123 6.7 AGTTTGTTTAATAGACAAACTAAGT
Position: -88
Score: 6.1
Sequence: AGTTTGTTTGTGATATATACAAACT
Locus tag: GTNG_1777
GTNG_1777 -88 6.1 AGTTTGTTTGTGATATATACAAACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: galM
Ortholog function: Aldose 1-epimerase (EC 5.1.3.3)
Geobacillus kaustophilus HTA426 GK1877 -44 5.8 ACTTAGTTTATTAATCTAACTATCT
Bacillus clausii KSM-K16 ABC0574 -45 6.3 ACTTAGTTTAAATAATAAACAAACC
© 2009-2020 RegPrecise