Propagation of NrdR regulog to Yersinia pestis biovar Antiqua str. B42003004
| Source regulog: | NrdR - Enterobacteriales |
| Regulator type: | Transcription factor |
| Regulator family: | NrdR |
| Regulation mode: | repressor |
| Biological process: | Ribonucleotide reductases |
| Effector: | Deoxyribonucleotides |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Yersinia pestis biovar Antiqua str. B42003004 |
| Orthologous TF(s) | YpB42003004_3370 |
| Regulated genes | 4 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -132
Score: 5.5 Sequence: CCACTATATATTGTGT
Locus tag: YpB42003004_2224
|
||||
| YpB42003004_2224 | -132 | 5.5 | CCACTATATATTGTGT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nrdA | ||||
| Ortholog function: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) | ||||
| Yersinia pestis KIM | y2974 | -165 | 3 | ACTCACTATCTTGTTA |
| -132 | 5.5 | CCACTATATATTGTGT | ||
| Serratia proteamaculans 568 | Spro_3271 | -83 | 3.2 | AACCCCTATATATAGT |
| -81 | 5.7 | CCCCTATATATAGTGT | ||
|
Position: -171
Score: 5.2 Sequence: TAACTACATGTAGTGT
Position: -140
Score: 5.3 Sequence: GCACTACATATAGTAT
Locus tag: YpB42003004_0919
|
||||
| YpB42003004_0919 | -171 | 5.2 | TAACTACATGTAGTGT | |
| -140 | 5.3 | GCACTACATATAGTAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nrdH | ||||
| Ortholog function: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_04022 | -106 | 4.6 | TTCCCATATCTTGTGT |
| -75 | 5.3 | CATCTACATCTAGTAT | ||
| Erwinia amylovora ATCC 49946 | EAM_2594 | -121 | 5.1 | ACGCTATATCTAGTAT |
| -89 | 4.2 | ACGCTATATGGTGTGT | ||
| Yersinia pestis KIM | y1225 | -171 | 5.2 | TAACTACATGTAGTGT |
| -140 | 5.3 | GCACTACATATAGTAT | ||
| Serratia proteamaculans 568 | Spro_3721 | -164 | 4.4 | ACACCATATATAGCGT |
| -133 | 5.4 | TATCTACATATAGTAT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3335 | -162 | 4.4 | ATCATATATCTTGTGT |
| -131 | 5.3 | TATCTACATCTAGTAT | ||
| Proteus mirabilis HI4320 | PMI0416 | -107 | 4.9 | ACACCATATCTAGTGT |
| -76 | 5.6 | AACCTATATATAGTAT | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1287 | -133 | 4.6 | ACACCATATATAGTGC |
| -102 | 5.6 | TCACTACATATAGTAT | ||
|
Position: -142
Score: 5.1 Sequence: TACCCATATATAGTGT
Position: -140
Score: 3.9 Sequence: CCCATATATAGTGTCT
Position: -111
Score: 4.7 Sequence: CATCTATATGTAGTAG
Locus tag: YpB42003004_0149
|
||||
| YpB42003004_0149 | -142 | 5.1 | TACCCATATATAGTGT | |
| -140 | 3.9 | CCCATATATAGTGTCT | ||
| -111 | 4.7 | CATCTATATGTAGTAG | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nrdD | ||||
| Ortholog function: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4238 | -208 | 4.3 | GCACTATATATAGACT |
| -177 | 5 | ACCCAATATGTTGTAT | ||
| Salmonella typhimurium LT2 | STM4452 | -207 | 4.5 | TCACTACATATAGACT |
| -177 | 5 | ACCCAATATGTTGTAT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03580 | -225 | 4.7 | TCACTACATATAGAAC |
| -194 | 5 | ACCCAATATGTTGTAT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04646 | -207 | 4.7 | TCACTACATATAGAAC |
| -176 | 5 | GCCCAACATATTGTAT | ||
| Enterobacter sp. 638 | Ent638_0437 | -203 | 4.7 | TCACTACATATAGAAC |
| -172 | 5.1 | ACCCAACATCTTGTAT | ||
| Erwinia amylovora ATCC 49946 | EAM_3059 | -67 | 3 | ATACCATATATAGATA |
| -36 | 3.4 | GGACTATATGTAGTTG | ||
| Yersinia pestis KIM | y0733 | -142 | 5.1 | TACCCATATATAGTGT |
| -111 | 4.7 | CATCTATATGTAGTAG | ||
| Serratia proteamaculans 568 | Spro_0525 | -189 | 5 | TATCTATATATAGTGC |
| -158 | 4.9 | CACCTATATGTAGTAG | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0375 | -132 | 4.4 | TTTCAATATATAGTGC |
| -101 | 5.5 | TACCTACATATAGTGT | ||
| Edwardsiella tarda EIB202 | ETAE_0423 | -156 | 4.8 | TTCCCATATATAGTGT |
| -124 | 5.1 | CACCTATATATAGTAG | ||
| Proteus mirabilis HI4320 | PMI3451 | -143 | 4.7 | TTACTATATATTGTGC |
| -111 | 4.2 | ATACAACATATAGTAA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4499 | -119 | 5.1 | TTACTATATATTGTGT |
| -88 | 3.8 | AGACTATATATAGCAA | ||