Propagation of NarP regulog to Yersinia pestis biovar Antiqua str. B42003004
| Source regulog: | NarP - Enterobacteriales |
| Regulator type: | Transcription factor |
| Regulator family: | LuxR |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrate and nitrite respiration |
| Effector: | Nitrate; Nitrite |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Yersinia pestis biovar Antiqua str. B42003004 |
| Orthologous TF(s) | YpB42003004_0709 |
| Regulated genes | 11 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -260
Score: 4 Sequence: TACCTAAGAATAGTTA
Locus tag: YpB42003004_1583
|
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| YpB42003004_1583 | -260 | 4 | TACCTAAGAATAGTTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: adhE | ||||
| Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1241 | -215 | 4.7 | TACCCAGAAGTGAGTA |
| Salmonella typhimurium LT2 | STM1749 | -216 | 4.6 | TACTCAGAAGTGAGTA |
| Citrobacter koseri ATCC BAA-895 | CKO_01318 | -216 | 4.6 | TACTCAGAAGTGAGTA |
| Yersinia pestis KIM | y2023 | -260 | 4 | TACCTAAGAATAGTTA |
| Serratia proteamaculans 568 | Spro_2704 | -252 | 4 | TACCCAAGAGTAGTTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2326 | -289 | 4 | CACCCACAAATAGGTA |
| Edwardsiella tarda EIB202 | ETAE_1508 | -239 | 4.4 | TACCCAAGAATGAGTA |
|
Position: -55
Score: 4.7 Sequence: TACTCATTTGTAGGTA
Locus tag: YpB42003004_1608
|
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| YpB42003004_1608 | -55 | 4.7 | TACTCATTTGTAGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ompW | ||||
| Ortholog function: Outer membrane protein W precursor | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1256 | -55 | 4.5 | TACTCCAATGTAGGTA |
| Salmonella typhimurium LT2 | STM1732 | -55 | 4.7 | TACTTCATTGTGGGTA |
| Citrobacter koseri ATCC BAA-895 | CKO_01333 | -55 | 4.5 | TACTCCATTGTAGGTA |
| Yersinia pestis KIM | y2044 | -43 | 4.7 | TACTCATTTGTAGGTA |
| Serratia proteamaculans 568 | Spro_2674 | -28 | 4.5 | TACCCGTAAGTAGGTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2303 | -56 | 4.9 | TACCTACTTAGGGGTA |
| Edwardsiella tarda EIB202 | ETAE_1528 | -52 | 3.7 | TCACTCAATATGGTTA |
| Proteus mirabilis HI4320 | PMI1350 | -59 | 4.9 | TACTTATTAATGGGTA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2478 | -55 | 3.8 | TTCTAATATATGAGTA |
|
Position: -158
Score: 4.3 Sequence: TACTCATTATTCGGTA
Locus tag: YpB42003004_0708
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| YpB42003004_0708 | -158 | 4.3 | TACTCATTATTCGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: napF | ||||
| Ortholog function: Periplasmic nitrate reductase, ferredoxin-type protein NapF | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2208 | -129 | 4.6 | TACCCCGATCGGGGTA |
| Salmonella typhimurium LT2 | STM2261 | -132 | 4.8 | TACCTCTATCGGGGTA |
| Yersinia pestis KIM | y1442 | -158 | 4.3 | TACTCATTATTCGGTA |
| Serratia proteamaculans 568 | Spro_3488 | -322 | 4.7 | TACCCCTTTAGGGGGA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1898 | -111 | 4.4 | TACCTCTAAAGGGTGA |
| Edwardsiella tarda EIB202 | ETAE_1114 | -156 | 3.9 | TAACCCAAAAGAGGAA |
|
Position: -198
Score: 3.7 Sequence: CTCCTCGAAAGAGGTA
Locus tag: YpB42003004_3524
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| YpB42003004_3524 | -198 | 3.7 | CTCCTCGAAAGAGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dmsA | ||||
| Ortholog function: Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0894 | -180 | 3.4 | TACCGAACAATAATTA |
| Salmonella typhimurium LT2 | STM0964 | -161 | 4.6 | TACCCTATTAGGGGTA |
| Citrobacter koseri ATCC BAA-895 | CKO_02177 | -166 | 5.2 | TACCCCTTTGGGGGTA |
|
Position: -108
Score: 4.4 Sequence: TACCCACTTGGAGTTA
Locus tag: YpB42003004_0317
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| YpB42003004_0317 | -108 | 4.4 | TACCCACTTGGAGTTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dnrN | ||||
| Ortholog function: Nitric oxide-dependent regulator DnrN | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4209 | -79 | 3.7 | TGCTACGTAAGGGTTA |
| Salmonella typhimurium LT2 | STM4399 | -78 | 3.9 | CACCCCGAAAGAGTTA |
| Citrobacter koseri ATCC BAA-895 | CKO_03623 | -78 | 3.9 | TGACCCGAAAGGGTTA |
| Yersinia pestis KIM | y0652 | -108 | 4.4 | TACCCACTTGGAGTTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3606 | -81 | 4.8 | TACCTCGTAAGCGGTA |
|
Position: -112
Score: 4.8 Sequence: TACCTCTATAAGGGTA
Locus tag: YpB42003004_1085
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| YpB42003004_1085 | -112 | 4.8 | TACCTCTATAAGGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ccmA | ||||
| Ortholog function: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2201 | -129 | 4.6 | TACCCCGATCGGGGTA |
| Salmonella typhimurium LT2 | STM2254 | -132 | 4.8 | TACCTCTATCGGGGTA |
| Citrobacter koseri ATCC BAA-895 | CKO_00574 | -612 | 4.6 | TACCCCAATCGGGGTA |
| Yersinia pestis KIM | y1567 | -112 | 4.8 | TACCTCTATAAGGGTA |
| Serratia proteamaculans 568 | Spro_3391 | -49 | 4.9 | TACCCCTATTGGAGTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1882 | -86 | 4.6 | TAACCCTTTAGGGTTA |
| Edwardsiella tarda EIB202 | ETAE_2461 | -64 | 4.4 | TACCCCGAATGAGTTA |