Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of GntR regulog to Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066

Reference regulog properties
Source regulog: GntR - Enterobacteriales  
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor
Biological process: Gluconate utilization
Effector: Gluconate
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066
Orthologous TF(s) SeH_A4025
Regulated genes 5
Built upon 61 sites [see more]
Predicted regulatory interactions in Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066
Locus tag Position Score Sequence
Position: -212
Score: 6.1
Sequence: GTATTTTACCGGTAACATGA
Locus tag: Salmentericaenterica_010100002005
Salmentericaenterica_010100002005 -212 6.1 GTATTTTACCGGTAACATGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: edd
Ortholog function: 6-phosphogluconate dehydratase (EC 4.2.1.12)
Escherichia coli str. K-12 substr. MG1655 b1851 -212 6.3 TTATTTTACCGGTAACATGA
Salmonella typhimurium LT2 STM1885 -212 6.1 GTATTTTACCGGTAACATGA
Citrobacter koseri ATCC BAA-895 CKO_01115 -211 6.3 TTATTTTACCGGTAACATGA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02366 -211 6.3 TTATTTTACCGGTAACATGA
-2 5.4 CAATGTTACGGGTAACAAAT
Enterobacter sp. 638 Ent638_2420 -210 6.3 TTATTTTACCGGTAACATGA
Serratia proteamaculans 568 Spro_4499 -73 6.4 CAATGTTACCGATAACATGT
-59 5.5 ACATGTTACCGGTAACAAAC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1836 -359 5.9 CATTGTTACCGGTATCATTT
Proteus mirabilis HI4320 PMI2760 -111 5.1 GCTTGTTACCCGTAACAATG
-96 6.4 CAATGTTACCGGTAACAAGT
Position: -100
Score: 6.4
Sequence: CAATGTTACCGATAACAGTT
Locus tag: Salmentericaenterica_010100006585
Salmentericaenterica_010100006585 -100 6.4 CAATGTTACCGATAACAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gntK
Ortholog function: Thermoresistant gluconokinase (EC 2.7.1.12)
Citrobacter koseri ATCC BAA-895 CKO_04856 -101 6.4 CAATGTTACCGATAACAGTT
-88 5.6 AACAGTTACCCGTAACAATT
Enterobacter sp. 638 Ent638_3845 -49 5.8 CAATGTTACCGATAACTGTT
-36 6 AACTGTTACCCGTAACAATT
Position: -178
Score: 6
Sequence: ATATGTTACCCGTATCATTC
Locus tag: Salmentericaenterica_010100006710
Salmentericaenterica_010100006710 -178 6 ATATGTTACCCGTATCATTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: gntT
Ortholog function: High-affinity H+/gluconate symporter
Escherichia coli str. K-12 substr. MG1655 b3415 -178 5.9 AGATGTTACCCGTATCATTC
-37 4.9 TGACGTTACCCATAACAAAT
Salmonella typhimurium LT2 STM3512 -178 6 ATATGTTACCCGTATCATTC
-37 4.7 TGACGTTACCCATAACAAAG
Citrobacter koseri ATCC BAA-895 CKO_04836 -178 6 ATATGTTACCCGTATCATTC
-37 4.9 CGACGTTACCCATAACAAAT
Position: -119
Score: 5.1
Sequence: CAATGTTACGCATAACGTGA
Locus tag: Salmentericaenterica_010100015407
Salmentericaenterica_010100015407 -119 5.1 CAATGTTACGCATAACGTGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: idnK
Ortholog function: Thermoresistant gluconokinase (EC 2.7.1.12)
Escherichia coli str. K-12 substr. MG1655 b4268 -119 5 CTATGTTACGCATAACGTGA
Salmonella typhimurium LT2 STM4485 -119 5.1 CAATGTTACGCATAACGTGA
Position: -117
Score: 4.3
Sequence: TCACGTTATGCGTAACATTG
Locus tag: Salmentericaenterica_010100015417
Salmentericaenterica_010100015417 -117 4.3 TCACGTTATGCGTAACATTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: idnD
Ortholog function: L-idonate 5-dehydrogenase (EC 1.1.1.264)
Escherichia coli str. K-12 substr. MG1655 b4267 -146 3.8 TAtTtcTACtGaTAAgAaTT
-116 3.8 TcAcGTTAtgcGTAACATag
Salmonella typhimurium LT2 STM4484 -116 4.3 TcAcGTTAtgcGTAACATTg
Serratia proteamaculans 568 Spro_3287 -120 4.2 TcAcGTTAaaGGTAACAgcT
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