Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of NtrC regulog to Yersinia pestis biovar Orientalis str. MG05-1020

Reference regulog properties
Source regulog: NtrC - Enterobacteriales
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Yersinia pestis biovar Orientalis str. MG05-1020
Orthologous TF(s) YpMG051020_2624
Regulated genes 7
Built upon 130 sites [see more]
Predicted regulatory interactions in Yersinia pestis biovar Orientalis str. MG05-1020
Locus tag Position Score Sequence
Position: -29
Score: 5.3
Sequence: TGCACCGAAACTGTGCA
Locus tag: YpMG051020_2623
YpMG051020_2623 -29 5.3 TGCACCGAAACTGTGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ntrB
Ortholog function: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Escherichia coli str. K-12 substr. MG1655 b3869 -38 6.1 TGCACTAAAATGGTGCA
Salmonella typhimurium LT2 STM4006 -39 6.1 TGCACTAAAATGGTGCA
Citrobacter koseri ATCC BAA-895 CKO_03143 -40 6 TGCACTAAATTGGTGCA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04177 -39 6 TGCACTAAATTGGTGCA
Enterobacter sp. 638 Ent638_4097 -38 5.8 TGCACTAAATTAGTGCA
Erwinia amylovora ATCC 49946 EAM_0031 -40 5.7 TGCACTAAGTTGGTGCA
Yersinia pestis KIM y3805 -29 5.3 TGCACCGAAACTGTGCA
Serratia proteamaculans 568 Spro_4882 -29 5.8 TGCACTAAAAAGGTGCA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0028 -29 5.2 TGCACCATGCTGGTGCG
Edwardsiella tarda EIB202 ETAE_3494 -28 6.1 TGCACCAAAATAGTGCA
Proteus mirabilis HI4320 PMI2883 -32 6.1 TGCACTAAAATGGTGCA
Photorhabdus luminescens subsp. laumondii TTO1 plu0236 -26 5.7 TGCACCAAAAAAGTGCA
Position: -308
Score: 3.6
Sequence: TGCACTTGATTGAGGCA
Position: -286
Score: 3.6
Sequence: TGTACATTTGTAGTGCA
Locus tag: YpMG051020_3475
YpMG051020_3475 -308 3.6 TGCACTTGATTGAGGCA
-286 3.6 TGTACATTTGTAGTGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: astC
Ortholog function: Succinylornithine transaminase (EC 2.6.1.81)
Yersinia pestis KIM y2349 -382 3.6 TGTACATTTGTAGTGCA
Position: -270
Score: 4.8
Sequence: AGCACTGAAATGGGGCA
Locus tag: YpMG051020_4706
YpMG051020_4706 -270 4.8 AGCACTGAAATGGGGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hisJ
Ortholog function: Histidine ABC transporter, substrate-binding component
Escherichia coli str. K-12 substr. MG1655 b2309 -162 5.5 TGCACTATCGTGGTGCA
Salmonella typhimurium LT2 STM2354 -211 4.4 GGAACTATCACGGTGCA
-182 5.1 TGCACCTTTTTGGTGCA
Citrobacter koseri ATCC BAA-895 CKO_00478 -212 4.3 TTAACCATCACGGTGCG
-183 5.8 TGCACCATCATGGTGCG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02699 -215 5.3 TGCCCCAAAAGGGTGCA
-185 4 TGGATCATTTCAGTGCA
Enterobacter sp. 638 Ent638_2858 -212 4.1 TTCCCTGTCACGGTGCG
-182 5.2 TGACCCAATATGGTGCA
Yersinia pestis KIM y1607 -123 4.8 AGCACTGAAATGGGGCA
Serratia proteamaculans 568 Spro_3326 -265 4.4 CGCACTGAATTAGGGCG
-243 4.3 TGCACCATAATGATCCC
Position: -205
Score: 5.5
Sequence: TGCACCTAAATGGTGCG
Locus tag: YpMG051020_1134
YpMG051020_1134 -205 5.5 TGCACCTAAATGGTGCG
Supported by regulated orthologs from reference regulons
Ortholog gene name: EAM_0872
Ortholog function: Predicted ABC transporter, substrate-binding component
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01766 -211 3.9 GGCGCCAGCGTGGTGCT
-193 5.1 TGCATTATTATGGTGCA
Erwinia amylovora ATCC 49946 EAM_0872 -247 3.7 GGCGCCAGTCTGGTGCT
-229 4.3 TGCCCTATTTCGGGGCA
Yersinia pestis KIM y0932 -205 5.5 TGCACCTAAATGGTGCG
Serratia proteamaculans 568 Spro_0932 -214 4.5 AGCGCCATTTTGGTGCT
-195 4.5 CGCACTTTGATGGTGCG
Position: -134
Score: 5.8
Sequence: TGCACCAACTTGGTGCG
Locus tag: YpMG051020_1248
YpMG051020_1248 -134 5.8 TGCACCAACTTGGTGCG
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnK
Ortholog function: nitrogen regulatory protein P-II
Escherichia coli str. K-12 substr. MG1655 b0450 -137 5.2 TGCACTGTCATAGTGCG
Salmonella typhimurium LT2 STM0462 -177 5.2 TGCACCGTCGTGGTGCG
Citrobacter koseri ATCC BAA-895 CKO_02708 -147 5.3 TGCACCGTTATAGTGCG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00413 -181 5.3 TGCACCGTTGTGGTGCA
Enterobacter sp. 638 Ent638_0918 -160 5.3 TGCACTGTCATGGTGCG
Erwinia amylovora ATCC 49946 EAM_1004 -209 4.7 TGCATCATTTTAGTGCG
-189 5.1 TGAACTATTTTGGTGCA
Yersinia pestis KIM y1041 -191 5.8 TGCACCAACTTGGTGCG
Serratia proteamaculans 568 Spro_1109 -192 5.3 CGCACCAAAGTAGTGCG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1160 -244 5.8 TGCACCAACTTAGTGCA
Edwardsiella tarda EIB202 ETAE_1003 -152 5.2 TGCACCGTTTTGGTGCT
Proteus mirabilis HI4320 PMI0126 -114 4.7 TGCACTAAGTTAGTGAG
Photorhabdus luminescens subsp. laumondii TTO1 plu3857 -173 5.5 TGCACTAATTCGGTGCA
Position: -307
Score: 4.2
Sequence: CGCACTACGGAAGTGCA
Position: -278
Score: 4.2
Sequence: TGCCTCTATTTGGTGCG
Locus tag: YpMG051020_0216
YpMG051020_0216 -307 4.2 CGCACTACGGAAGTGCA
-278 4.2 TGCCTCTATTTGGTGCG
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltI
Ortholog function: Glutamate-aspartate ABC transporter, substrate-binding component
Yersinia pestis KIM y1189 -278 4.2 TGCCTCTATTTGGTGCG
Serratia proteamaculans 568 Spro_1214 -212 4.8 GGCACCATAAGGGTGCA
-183 5 TGCATTAATTTGGTGCG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1314 -300 5.3 CGCACCAAATTGGTGCC
Photorhabdus luminescens subsp. laumondii TTO1 plu1307 -239 4.2 TGCACCAAAAAAATGAT