Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of NtrC regulog to Pantoea ananatis LMG 20103

Reference regulog properties
Source regulog: NtrC - Enterobacteriales
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Pantoea ananatis LMG 20103
Orthologous TF(s) PANA_3951
Regulated genes 9
Built upon 130 sites [see more]
Predicted regulatory interactions in Pantoea ananatis LMG 20103
Locus tag Position Score Sequence
Position: -133
Score: 4.5
Sequence: GGCACCGTTTTGGTGCT
Locus tag: PANA_0860
PANA_0860 -133 4.5 GGCACCGTTTTGGTGCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: EAM_0872
Ortholog function: Predicted ABC transporter, substrate-binding component
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01766 -211 3.9 GGCGCCAGCGTGGTGCT
-193 5.1 TGCATTATTATGGTGCA
Erwinia amylovora ATCC 49946 EAM_0872 -247 3.7 GGCGCCAGTCTGGTGCT
-229 4.3 TGCCCTATTTCGGGGCA
Yersinia pestis KIM y0932 -205 5.5 TGCACCTAAATGGTGCG
Serratia proteamaculans 568 Spro_0932 -214 4.5 AGCGCCATTTTGGTGCT
-195 4.5 CGCACTTTGATGGTGCG
Position: -193
Score: 4.8
Sequence: AGCACCAAAGGAGTGCA
Locus tag: PANA_1008
PANA_1008 -193 4.8 AGCACCAAAGGAGTGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnK
Ortholog function: nitrogen regulatory protein P-II
Escherichia coli str. K-12 substr. MG1655 b0450 -137 5.2 TGCACTGTCATAGTGCG
Salmonella typhimurium LT2 STM0462 -177 5.2 TGCACCGTCGTGGTGCG
Citrobacter koseri ATCC BAA-895 CKO_02708 -147 5.3 TGCACCGTTATAGTGCG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00413 -181 5.3 TGCACCGTTGTGGTGCA
Enterobacter sp. 638 Ent638_0918 -160 5.3 TGCACTGTCATGGTGCG
Erwinia amylovora ATCC 49946 EAM_1004 -209 4.7 TGCATCATTTTAGTGCG
-189 5.1 TGAACTATTTTGGTGCA
Yersinia pestis KIM y1041 -191 5.8 TGCACCAACTTGGTGCG
Serratia proteamaculans 568 Spro_1109 -192 5.3 CGCACCAAAGTAGTGCG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1160 -244 5.8 TGCACCAACTTAGTGCA
Edwardsiella tarda EIB202 ETAE_1003 -152 5.2 TGCACCGTTTTGGTGCT
Proteus mirabilis HI4320 PMI0126 -114 4.7 TGCACTAAGTTAGTGAG
Photorhabdus luminescens subsp. laumondii TTO1 plu3857 -173 5.5 TGCACTAATTCGGTGCA
Position: -342
Score: 4
Sequence: TGCACGACAGCCGTGCA
Locus tag: PANA_1674
PANA_1674 -342 4 TGCACGACAGCCGTGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: astC
Ortholog function: Succinylornithine transaminase (EC 2.6.1.81)
Erwinia amylovora ATCC 49946 EAM_1606 -370 3.8 TGCGTCATATTGGTGAG
-357 3.7 TGAGTCATCCTGGTGCA
Position: -227
Score: 4.5
Sequence: CGCACTGTTGCGGTGCA
Locus tag: PANA_2418
PANA_2418 -227 4.5 CGCACTGTTGCGGTGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nac
Ortholog function: Nitrogen assimilation transcriptional regulator, LysR family
Escherichia coli str. K-12 substr. MG1655 b1988 -205 5.1 TGAACCATCGTGGTGCA
Citrobacter koseri ATCC BAA-895 CKO_00955 -206 4.8 TGCGCCATTCTGGTGCA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02437 -206 5 TGCACCGTTGTAGTGCG
Enterobacter sp. 638 Ent638_2564 -206 4.8 TGCACGATTCTGGTGCA
Erwinia amylovora ATCC 49946 EAM_2112 -228 4.3 TGCACCATTAACGAGCA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2888 -197 4.5 TGCTTTAAGATGGTGCA
Position: -205
Score: 4.8
Sequence: TGCCCCAATGTGATGCA
Position: -174
Score: 4
Sequence: TGCACCCTAATTGCGCC
Position: -163
Score: 3.7
Sequence: TGCGCCAGATTGATGGA
Locus tag: PANA_3755
PANA_3755 -205 4.8 TGCCCCAATGTGATGCA
-174 4 TGCACCCTAATTGCGCC
-163 3.7 TGCGCCAGATTGATGGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: CKO_01526
Ortholog function: Predicted transcriptional regulator, RpiR family
Citrobacter koseri ATCC BAA-895 CKO_01526 -151 3.5 TGCACAAATGTTGATCA
Serratia proteamaculans 568 Spro_2345 -204 4.4 TGCCCAATTGTTGTGCA
Position: -276
Score: 5.5
Sequence: TGCACCAAAAAAGTGCT
Locus tag: PANA_3949
PANA_3949 -276 5.5 TGCACCAAAAAAGTGCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnA
Ortholog function: Glutamine synthetase type I (EC 6.3.1.2)
Escherichia coli str. K-12 substr. MG1655 b3870 -221 5.9 TGCACCAACATGGTGCT
-189 5.4 AGCACTATATTGGTGCA
Salmonella typhimurium LT2 STM4007 -224 5.5 TGCACCAATGTGGTGCT
-192 5.2 AGCACTATTTTGGTGCA
Citrobacter koseri ATCC BAA-895 CKO_03140 -202 5.9 TGCACCAACATGGTGCT
-170 5.4 AGCACTATATTGGTGCA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04178 -251 6 TGCACCAAAATGGTGCT
-219 5.2 AGCACTATTTTGGTGCA
Enterobacter sp. 638 Ent638_4096 -237 5.3 CGCACCATTATGGTGCT
-205 5.6 AGCACTATAATGGTGCA
Erwinia amylovora ATCC 49946 EAM_0032 -288 5.1 TGCACCAAAATGGTGAC
-256 5.3 AGCACCAGAATGGTGCG
Yersinia pestis KIM y3804 -384 5.6 TGCACCAAAATAGTGCC
-353 5.5 GGCACCAAAATAGTGCA
Serratia proteamaculans 568 Spro_4881 -220 5.2 TGCACCATTACAGTGCT
-188 5.2 TGCACCATTTAAGTGCA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0029 -218 5.3 TGCACCAAACAAGTGCA
-186 5.4 AGCACCAACTTGGTGCT
Edwardsiella tarda EIB202 ETAE_3493 -220 5.5 TGCACCAAGATTGTGCG
-188 5.2 TGCACCATTATGGAGCA
Proteus mirabilis HI4320 PMI2882 -223 5.9 TGCACCAAAATTGTGCA
-189 5.8 TGCACCAAATTTGTGCA
Photorhabdus luminescens subsp. laumondii TTO1 plu0237 -303 5.1 CGCACTAATATTGTGCG
-272 5.9 TGCACCAATATAGTGCA
Position: 1
Score: 5.6
Sequence: TGCACCAAATCAGTGCA
Locus tag: PANA_3950
PANA_3950 1 5.6 TGCACCAAATCAGTGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ntrB
Ortholog function: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Escherichia coli str. K-12 substr. MG1655 b3869 -38 6.1 TGCACTAAAATGGTGCA
Salmonella typhimurium LT2 STM4006 -39 6.1 TGCACTAAAATGGTGCA
Citrobacter koseri ATCC BAA-895 CKO_03143 -40 6 TGCACTAAATTGGTGCA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04177 -39 6 TGCACTAAATTGGTGCA
Enterobacter sp. 638 Ent638_4097 -38 5.8 TGCACTAAATTAGTGCA
Erwinia amylovora ATCC 49946 EAM_0031 -40 5.7 TGCACTAAGTTGGTGCA
Yersinia pestis KIM y3805 -29 5.3 TGCACCGAAACTGTGCA
Serratia proteamaculans 568 Spro_4882 -29 5.8 TGCACTAAAAAGGTGCA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0028 -29 5.2 TGCACCATGCTGGTGCG
Edwardsiella tarda EIB202 ETAE_3494 -28 6.1 TGCACCAAAATAGTGCA
Proteus mirabilis HI4320 PMI2883 -32 6.1 TGCACTAAAATGGTGCA
Photorhabdus luminescens subsp. laumondii TTO1 plu0236 -26 5.7 TGCACCAAAAAAGTGCA
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