Propagation of Crp regulog to Erwinia pyrifoliae Ep1/96
| Source regulog: | Crp - Enterobacteriales |
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | activator (repressor) |
| Biological process: | Carbon catabolism |
| Effector: | Cyclic 3',5'-AMP |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Erwinia pyrifoliae Ep1/96 |
| Orthologous TF(s) | EpC_34000 |
| Regulated genes | 126 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -144
Score: 4 Sequence: TTTCATGACACAGAACACAATT
Locus tag: EpC_01350
|
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| EpC_01350 | -144 | 4 | TTTCATGACACAGAACACAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glpF | ||||
| Ortholog function: facilitator for glycerol uptake | ||||
| Erwinia amylovora ATCC 49946 | EAM_0119 | -146 | 4.1 | TTTCATGACGCGGTACACATTT |
|
Position: -66
Score: 3.8 Sequence: TATTGTATTTTTATTCACTATT
Locus tag: EpC_01560
|
||||
| EpC_01560 | -66 | 3.8 | TATTGTATTTTTATTCACTATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: argE | ||||
| Ortholog function: acetylornithine deacetylase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3957 | -66 | 3.7 | TAGTGTATTTTTATTCATAAAT |
| Salmonella typhimurium LT2 | STM4120 | -66 | 3.9 | TAATGTATTTTTATTCATAATT |
| Citrobacter koseri ATCC BAA-895 | CKO_03037 | -27 | 4.3 | TAATGTATTTTTATTCACAAAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04246 | -27 | 4 | TATTGTATTTTTATTCAAAATA |
| Enterobacter sp. 638 | Ent638_4029 | -66 | 4.2 | TAGTGTATTTTTATTCACATTT |
| Erwinia amylovora ATCC 49946 | EAM_0137 | -66 | 3.8 | TATTGTATTTTTATTCACTATT |
| Yersinia pestis KIM | y0309 | -223 | 3.6 | TATTTTTATTTATGTCAATAAA |
| Serratia proteamaculans 568 | Spro_4782 | -71 | 4.3 | TATTGTATTTTTATTCACAATA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0191 | -65 | 4 | TATTGTATTTTTATTCAAAATA |
| Edwardsiella tarda EIB202 | ETAE_3483 | -65 | 3.9 | TATTGTATTTTTATTCATAATT |
| Proteus mirabilis HI4320 | PMI3236 | -65 | 3.9 | TAATGTATTTTTATTCAAAAAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4745 | -65 | 3.9 | TAATGTATTTTTATTCAAAAAA |
|
Position: -127
Score: 3.5 Sequence: AATAGTGAATAAAAATACAATA
Locus tag: EpC_01570
|
||||
| EpC_01570 | -127 | 3.5 | AATAGTGAATAAAAATACAATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: argB | ||||
| Ortholog function: Acetylglutamate kinase (EC 2.7.2.8) | ||||
| Salmonella typhimurium LT2 | STM4122 | -44 | 3.5 | AATTATGAATAAAAATACATTA |
| Citrobacter koseri ATCC BAA-895 | CKO_03035 | -110 | 4 | ATTTGTGAATAAAAATACATTA |
| Enterobacter sp. 638 | Ent638_4027 | -44 | 3.8 | AAATGTGAATAAAAATACACTA |
| Erwinia amylovora ATCC 49946 | EAM_0138 | -121 | 3.5 | AATAGTGAATAAAAATACAATA |
| Yersinia pestis KIM | y0311 | -43 | 3.7 | TTTATTGACATAAATAAAAATA |
| Serratia proteamaculans 568 | Spro_4780 | -167 | 4 | TATTGTGAATAAAAATACAATA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0193 | -159 | 3.5 | TATTTTGAATAAAAATACAATA |
| Edwardsiella tarda EIB202 | ETAE_3481 | -160 | 3.4 | AATTATGAATAAAAATACAATA |
| Proteus mirabilis HI4320 | PMI3238 | -57 | 3.6 | TTTTTTGAATAAAAATACATTA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4743 | -59 | 3.6 | TTTTTTGAATAAAAATACATTA |
|
Position: -230
Score: 4.9 Sequence: TATCGTGACAAAAATCACAAAA
Position: -145
Score: 3.7 Sequence: ATTTGCGCCCTTCTTCACAGTC
Locus tag: EpC_02150
|
||||
| EpC_02150 | -230 | 4.9 | TATCGTGACAAAAATCACAAAA | |
| -145 | 3.7 | ATTTGCGCCCTTCTTCACAGTC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glpT | ||||
| Ortholog function: glycerol-3-phosphate transporter | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2240 | -219 | 3.7 | TTGTTTGATTTCGCGCATATTC |
| -179 | 3.6 | AAACGTGATTTCATGCGTCATT | ||
| -129 | 4.6 | ATGTGTGCGGCAATTCACATTT | ||
| Salmonella typhimurium LT2 | STM2283 | -220 | 3.6 | ATGTTTGATTTCGCGCATAATC |
| -180 | 4.2 | AAACGTGATTTCGTGCGCCTTT | ||
| -131 | 5.2 | ATATGTGCTGTAATTCACATTA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00537 | -221 | 3.6 | TTGTTTGATTTCGCGCATAATC |
| -181 | 4 | AAACGTGATTTCGTGCGCTTTT | ||
| -132 | 4.8 | ATCTGTGCTGTAATTCACATTA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02646 | -218 | 3.8 | TTGTTTGATTTCGAGCATATTC |
| -178 | 4.6 | TTATGTGATTTCGTGCTCACAT | ||
| -128 | 4.5 | AATTGTGCGATGTTTCACAGTA | ||
| Enterobacter sp. 638 | Ent638_2804 | -201 | 3.6 | TTGTTTGATTTCGAACATAATC |
| -161 | 3.8 | AAGCGTGATCTCATGCGCTTAT | ||
| -111 | 4 | ATCTGTGCGTTGATTCACAGTA | ||
| Erwinia amylovora ATCC 49946 | EAM_0195 | -240 | 3.7 | AAACGCGATGCGGTTAACGATG |
| -147 | 3.7 | ATTTGTGCCTCTCTTCACGGTC | ||
| Serratia proteamaculans 568 | Spro_0199 | -249 | 4.5 | GAATGTGATCATAATCACGATT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4166 | -253 | 3.7 | ATGTTTGATAAAGAGCAAAAAC |
| -193 | 4.9 | AAGTGTGATTTGCATCACTAAA | ||
| Edwardsiella tarda EIB202 | ETAE_3116 | -200 | 3.7 | ATATGAGCGATCTCTCACAGTA |
| Proteus mirabilis HI4320 | PMI3591 | -291 | 3.6 | ATGTTTGATAATGAGCAAAAAC |
| -232 | 5.4 | ATATGTGATACTAATCACAAAT | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4119 | -250 | 4.9 | TATTGTGACAATTGTCACAATT |
|
Position: -141
Score: 4.7 Sequence: AAATGGGATTTGGATCACCTTT
Locus tag: EpC_02200
|
||||
| EpC_02200 | -141 | 4.7 | AAATGGGATTTGGATCACCTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: udp | ||||
| Ortholog function: Uridine phosphorylase (EC 2.4.2.3) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3831 | -144 | 5.2 | TTATGTGATTTGCATCACTTTT |
| -92 | 4.2 | CATGGTGATGAGTATCACGAAA | ||
| Salmonella typhimurium LT2 | STM3968 | -144 | 5.1 | TATTGTGATGAACATCACTTTT |
| -92 | 4.1 | CATAGTGATGGCTGTCACGAAA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00173 | -143 | 5.2 | TTATGTGATGTAAATCACTATT |
| -91 | 3.9 | CATGGTGATGAGCGTCACGAAA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04327 | -143 | 5.2 | TAATGTGATGTGTATCACTATT |
| -91 | 4.1 | CTTGGTGACTATCATCACAAAA | ||
| Enterobacter sp. 638 | Ent638_3962 | -143 | 4.7 | TAGTGTGATGCATGTCACTATT |
| Erwinia amylovora ATCC 49946 | EAM_0200 | -143 | 4.6 | AATTGCGACTTGTATCACCTTT |
| -90 | 4 | ATTAAGGATGTTCATCACATAA | ||
| Yersinia pestis KIM | y0444 | -149 | 5.4 | ATGTGTGATTTAAATCACAATT |
| -97 | 4 | CAAGGTGACATAAATCACGAAA | ||
| Serratia proteamaculans 568 | Spro_0244 | -143 | 5.3 | TTTTGTGACTTTAATCACAAAA |
| -125 | 3.7 | AAAAGTTATGTAGATTGCATTC | ||
| -91 | 4.1 | CATAGTGATGGTTGTCACGAAA | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0185 | -197 | 5.1 | AAAAGTGATTTAAGTCACATTT |
| Edwardsiella tarda EIB202 | ETAE_0143 | -148 | 4.7 | TATTGTGAAAATAATCACAGTT |
| Proteus mirabilis HI4320 | PMI3532 | -145 | 5.1 | ATTTGTGATAACTATCACGTTT |
| -93 | 3.6 | ACAGGTGACGTCAATCACTAAA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4417 | -271 | 5.2 | TTTTGTGATTTATATCTCAAAA |
| -219 | 4 | TGAAGTGACATTTATCACTAAA | ||
|
Position: -116
Score: 3.2 Sequence: ATTTGTGAGGCTGAAAAATGTT
Locus tag: EpC_02670
|
||||
| EpC_02670 | -116 | 3.2 | ATTTGTGAGGCTGAAAAATGTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hupA | ||||
| Ortholog function: DNA-binding protein HU-alpha (HU-2) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4000 | -179 | 3.4 | AAACGTGATTTAACGCCTGATT |
| Citrobacter koseri ATCC BAA-895 | CKO_02986 | -179 | 3.4 | AAACGTGATTTAACGCCTGATT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04382 | -179 | 3.4 | AAACGTGATTTACCGCCTGAAT |
| Enterobacter sp. 638 | Ent638_0213 | -179 | 3.5 | AAACGTGATTTAACGCCTGTTT |
| Yersinia pestis KIM | y0499 | -181 | 3.4 | AAACGTGATTTAACGCCTGATT |
| Serratia proteamaculans 568 | Spro_0290 | -181 | 3.4 | AAACGTGATTTAACGCCTCATT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0238 | -197 | 3.3 | AAACGTGATTTAAGGCCTGAAA |
| Edwardsiella tarda EIB202 | ETAE_0183 | -182 | 3.3 | AAACGTGATTTAACACCTGATT |
| Proteus mirabilis HI4320 | PMI2771 | -183 | 3.7 | AAACGTGATTTAGTGCTTGAAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0492 | -179 | 3.4 | AAACGTGATTTAATGCTTTAAA |
|
Position: -241
Score: 5.4 Sequence: AAAAGTGATTTAGATCACATTT
Locus tag: EpC_03000
|
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| EpC_03000 | -241 | 5.4 | AAAAGTGATTTAGATCACATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yhcR | ||||
| Ortholog function: hypothetical protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3242 | -167 | 5.4 | AAAAGTGATTTAGATCACATAA |
| Salmonella typhimurium LT2 | STM3366 | -166 | 5.4 | AAAAGTGATTTAGATCACATAA |
| Citrobacter koseri ATCC BAA-895 | CKO_04650 | -168 | 5.4 | AAAAGTGATTTAGATCACATAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03651 | -116 | 5.2 | AAAAGTGATTTAGATCACACAT |
| -63 | 3.7 | TATTGTTAGCTACATAATAAAC | ||
| Enterobacter sp. 638 | Ent638_3679 | -165 | 5.4 | AAAAGTGATTTAGATCACATAT |
| Yersinia pestis KIM | y0179 | -269 | 5.2 | AAAAGTGATTTAGATCACACAT |
| Serratia proteamaculans 568 | Spro_4392 | -293 | 5.1 | AAAAGTGATTTAGATCACAGAT |
| -89 | 3.8 | ATTTGTGGTGCGTGTCAGCTAA | ||
|
Position: -38
Score: 3.6 Sequence: GATTTTTACGTAAATCGCAATT
Locus tag: EpC_03250
|
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| EpC_03250 | -38 | 3.6 | GATTTTTACGTAAATCGCAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mtgA | ||||
| Ortholog function: monofunctional biosynthetic peptidoglycan transglycosylase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3208 | -91 | 3.7 | ATTTGTTACATGAATCAGTTAA |
| -69 | 4 | ATGTGTGATGCGTACCATTTTT | ||
| Salmonella typhimurium LT2 | STM3326 | -91 | 3.9 | ATTTGTTACATGAATCATTTAA |
| -69 | 3.6 | ATGTGTGAAGCGTAGCATTTTA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_04611 | -92 | 3.7 | TTTTGTTACATGAATCAGTTAA |
| -70 | 3.6 | ATGTGTGAAGCGCAGCATTTTA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03617 | -93 | 3.6 | ATTTGTTACATGAATCAGTAAA |
| -71 | 3.8 | ATATGTGAAGCATAGCGAGTTA | ||
| Erwinia amylovora ATCC 49946 | EAM_3109 | -38 | 3.6 | GATTTTTACGCAGATCGCAATT |
| Serratia proteamaculans 568 | Spro_4340 | -72 | 3.7 | ATGTGTGATGTAGATTAGTGTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0317 | -72 | 3.7 | ATGTGTGATGTAGATTAGTGTT |
| Proteus mirabilis HI4320 | PMI3680 | -174 | 4.1 | TTTTTTGATTATCATTACATAG |
|
Position: -99
Score: 4.8 Sequence: TAATTTGAGCCGGTTCACACTT
Locus tag: EpC_03670
|
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| EpC_03670 | -99 | 4.8 | TAATTTGAGCCGGTTCACACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: deaD | ||||
| Ortholog function: ATP-independent RNA helicase | ||||
| Salmonella typhimurium LT2 | STM3280.S | -154 | 3.9 | CTTTTTGATTGCCATCACCTTC |
| -99 | 4.4 | TACTTTGAGCCGGTTCACACTT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_04559 | -103 | 3.9 | CTTTTTGATTGCCATCACCTTC |
| -48 | 4.4 | TACTTTGAGCCGGTTCACACTT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03570 | -154 | 3.8 | TTTTTTGCTTGCCATCACCTTC |
| -99 | 4.4 | TACTTTGAGCCGGTTCACACAT | ||
| Enterobacter sp. 638 | Ent638_3599 | -154 | 4.1 | TCTTATGATTGCCATCACCTTA |
| -99 | 4.4 | TACTTTGAGCCGGTTCACACTT | ||
| Erwinia amylovora ATCC 49946 | EAM_3065 | -99 | 4.8 | TAATTTGAGCCGGTTCACACTT |
| Yersinia pestis KIM | y0696 | -96 | 4.8 | TAATTTGAGCCGGTTCACACTT |
| Serratia proteamaculans 568 | Spro_0495 | -96 | 4.8 | TAATTTGAGCCGGTTCACACTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0718 | -96 | 4.4 | CAATTTGAGCCGGTTCACACTT |
| Edwardsiella tarda EIB202 | ETAE_0411 | -96 | 4.8 | TAATTTGAGCCGGTTCACACTT |
| Proteus mirabilis HI4320 | PMI3424 | -80 | 5 | TAATTTGAGCCAGTTCACATTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4523 | -95 | 5 | TAATTTGAGCCAGTTCACATTT |
|
Position: -158
Score: 3.8 Sequence: AAATGTGGCGCGGCACGCATAA
Locus tag: EpC_05190
|
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| EpC_05190 | -158 | 3.8 | AAATGTGGCGCGGCACGCATAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cysQ | ||||
| Ortholog function: PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4214 | -126 | 3.6 | AACAGTGAAGAATGCCACAATT |
| Salmonella typhimurium LT2 | STM4404 | -144 | 3.9 | TTTTTTGCGAGTGTTCACAGAA |
| Citrobacter koseri ATCC BAA-895 | CKO_03615 | -178 | 4.1 | TTTTTAGATCTGAAACACAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04608 | -178 | 4.1 | TTTTATGAGCGATAGCACAGAA |
| -126 | 3.7 | AAATGTGAATCTTGCCAGAAAA | ||
| -57 | 3.9 | TGATGCGATATAAATAAAACAA | ||
| Enterobacter sp. 638 | Ent638_0393 | -167 | 3.9 | TTTTTCGATCCAAGCCACAAAA |
| Erwinia amylovora ATCC 49946 | EAM_0455 | -158 | 4.2 | AAATGTGACACAGCACGAATAA |
| Serratia proteamaculans 568 | Spro_0454 | -180 | 3.7 | AACTGTGAAGTGTGGCAGAAAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3601 | -258 | 3.7 | TAAAGTGATTATCGTCTCTAAA |
|
Position: -168
Score: 3.9 Sequence: TCATGTGAGTTATCTCACTTTG
Locus tag: EpC_05350
|
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| EpC_05350 | -168 | 3.9 | TCATGTGAGTTATCTCACTTTG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: CKO_03591 | ||||
| Ortholog function: hypothetical protein | ||||
| Salmonella typhimurium LT2 | STM4440 | -229 | 4.5 | AACTGTAATACCCATCACACTT |
| -162 | 3.8 | TGCCGCGATAGATCTCACACTT | ||
| -111 | 4.1 | TTCTGTGGCGCAGATCACCTAT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04633 | -172 | 4.3 | TGTTGTGATACATCTCACGCCA |
| -121 | 4.2 | ATATGTGGAGTCGATCACCTAA | ||
| Enterobacter sp. 638 | Ent638_0424 | -265 | 3.8 | AAACCTTATCCGCGTCACACTT |
| -189 | 4.6 | TAGCGTGATATTCATCACGCAA | ||
| Erwinia amylovora ATCC 49946 | EAM_0469 | -156 | 3.8 | TGATGTGAGTTGTCTCGCTTTG |
|
Position: -238
Score: 4.8 Sequence: TGATGTGATAATGATAACATTT
Position: -117
Score: 4.2 Sequence: TATCGTGAAACTTCCCACAAAA
Locus tag: EpC_06610
|
||||
| EpC_06610 | -238 | 4.8 | TGATGTGATAATGATAACATTT | |
| -117 | 4.2 | TATCGTGAAACTTCCCACAAAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: deoC | ||||
| Ortholog function: 2-deoxyribose-5-phosphate aldolase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4381 | -149 | 4.6 | TTATTTGAACCAGATCGCATTA |
| -96 | 4.5 | AATTGTGATGTGTATCGAAGTG | ||
| Salmonella typhimurium LT2 | STM4567 | -133 | 4.9 | TAATTTGATTCAGATCTCATTA |
| -80 | 4.2 | AACTGTGATGTATATCGAAGTG | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03410 | -134 | 4.2 | TTATTTGAAGTGGATCTCGTTA |
| -81 | 4.2 | AACTGTGATGTATATCGAAGTG | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04837 | -158 | 5.2 | ATTTGTGATTTTAATCACGTTA |
| -105 | 3.7 | AACTGTGATGAATGTCGAAGTG | ||
| Enterobacter sp. 638 | Ent638_0541 | -151 | 4.6 | AAATTTGAAGTGGATCTCATTA |
| -98 | 3.7 | AACTGTGATGAATGTCGAAGTG | ||
| Erwinia amylovora ATCC 49946 | EAM_0615 | -233 | 4.6 | TGATGTGATAATTCTAACATTA |
| Yersinia pestis KIM | y3743 | -169 | 3.7 | TGCGGTGAGATGGATCTCAATT |
| Serratia proteamaculans 568 | Spro_0660 | -262 | 4.6 | ATTTGTGAACGATATCGCGTTA |
| -240 | 5.5 | TTTTGTGATGGTCTTCACATAT | ||
| -188 | 3.8 | TAGTGTGACTGTGAACGCGAAT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0727 | -282 | 4.4 | AAGTGTGAATGAATGCACAAAA |
| Proteus mirabilis HI4320 | PMI2416 | -267 | 4.4 | ATATGTGAGTTACTTCGCAACT |
| -135 | 5.6 | TTTTGTGATTCTGATCACAATT | ||
| -83 | 4.5 | TATTGTGACAGAAAGCACATCT | ||
|
Position: -75
Score: 4.4 Sequence: TCGTGTGATCTGCGCCACATTA
Locus tag: EpC_07750
|
||||
| EpC_07750 | -75 | 4.4 | TCGTGTGATCTGCGCCACATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: coaE | ||||
| Ortholog function: dephospho-CoA kinase | ||||
| Erwinia amylovora ATCC 49946 | EAM_0727 | -75 | 4.4 | TCGTGTGATCTGCGCCACATTA |
| Yersinia pestis KIM | y0757 | -259 | 3.8 | AAATGTGATCGGGCGTAAAACA |
| Serratia proteamaculans 568 | Spro_0774 | -158 | 3.8 | CAGTGTGACCGCCCGCTCATTT |
| Edwardsiella tarda EIB202 | ETAE_0650 | -272 | 4 | AAATGTGATCATACAAACGATT |
| Proteus mirabilis HI4320 | PMI2052 | -80 | 3.8 | TCTTGTGATAAAAATCAGTTTA |
|
Position: -128
Score: 5.3 Sequence: AATTGTTATCTGCCTCACATTT
Locus tag: EpC_07870
|
||||
| EpC_07870 | -128 | 5.3 | AATTGTTATCTGCCTCACATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: araT | ||||
| Ortholog function: putative permease of the Na+:galactoside symporter family | ||||
| Erwinia amylovora ATCC 49946 | EAM_0744 | -128 | 5.3 | AATTGTTATCTGCTTCACATTA |
| Serratia proteamaculans 568 | Spro_4014 | -139 | 4.1 | TTTTGCAAGCTGGCTCACAGTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3792 | -129 | 4.4 | ATTTGCTATATCCATCACACTT |
|
Position: -198
Score: 3.6 Sequence: AAAAGCGATCTGGTTTAACATT
Position: -53
Score: 3.1 Sequence: TTTTGAAATTGGTATGACCAAT
Locus tag: EpC_07890
|
||||
| EpC_07890 | -198 | 3.6 | AAAAGCGATCTGGTTTAACATT | |
| -53 | 3.1 | TTTTGAAATTGGTATGACCAAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pdhR | ||||
| Ortholog function: Transcriptional repressor for pyruvate dehydrogenase complex | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0113 | -156 | 3.7 | AAACGTTATATATGTCAAGTTG |
| -131 | 3.8 | AAATGTGCACAGTTTCATGATT | ||
| Salmonella typhimurium LT2 | STM0151 | -157 | 3.5 | AAACATGATTTCTGTAAAATTG |
| -120 | 3.2 | TTTACTGATTTCAATCAAAACC | ||
| -79 | 3 | CTTATTAAGCTTTCTCACGAAA | ||
| -54 | 3.4 | TAATGGGACAGGTTCCAGATAA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03260 | -180 | 3.2 | ATTTGTGCATAGTTACATCTTT |
| -157 | 3.1 | AAACGTTATTTCTGTAATCTTG | ||
| -148 | 3.3 | TTCTGTAATCTTGTTAAAATGT | ||
| -120 | 3.2 | TTTACTGATTTCAATCAAAACC | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00117 | -155 | 3.2 | AAATGTTATTTCTGTAAGGTTG |
| -118 | 3.2 | TTTACTGATTTCAATCAAAACC | ||
| Enterobacter sp. 638 | Ent638_0659 | -120 | 3.2 | TTTACTGATTTCAATCAAAACC |
| -77 | 3.1 | TATTGTATTTTCTGGCGAAAAT | ||
| -68 | 3 | TTTAGCGATACGAATATGAAAT | ||
| Erwinia amylovora ATCC 49946 | EAM_0746 | -198 | 3.3 | TAAAGCGATCGGATTTAACAAT |
| Yersinia pestis KIM | y0766 | -151 | 4.2 | AAATGTGCTGGGTTTCATGATT |
| -139 | 3.3 | TTTCATGATTTCGGTCAAGGTC | ||
| -74 | 3.4 | TTTTGAAATTGGTATTACCAAT | ||
| Serratia proteamaculans 568 | Spro_4012 | -132 | 3.1 | AAATGTGCGGGTAACCTGATTT |
| -56 | 3.4 | TTTTGAAATTGGTATTACCAAT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3790 | -120 | 3.7 | ATTGGTGATTTAGCTCAAGGTC |
| -55 | 3.4 | TTTTGAAATTGGTATTACCAAT | ||
| Edwardsiella tarda EIB202 | ETAE_0658 | -143 | 3.2 | TTTCATGATTTACATCAATAGT |
| Proteus mirabilis HI4320 | PMI2047 | -218 | 3.1 | TGTTTTTAATCTTTTCTAATAA |
| -199 | 4.4 | TAATGCGATCTAGTTATCAAAT | ||
| -181 | 4.2 | AAATTTGATGAATTTATCAAAT | ||
| -158 | 3 | ATTTGTTAAAATTTGCAGGTTT | ||
| -138 | 3.9 | TTTTATGATTTCGCTCAACAAC | ||
| -95 | 3.1 | CTTTGTTACTTTATTATCCATT | ||
| -89 | 3.1 | TACTTTATTATCCATTACATTA | ||
|
Position: -7
Score: 3.6 Sequence: TAGAGTAATGGCTATCGAAATT
Locus tag: EpC_07920
|
||||
| EpC_07920 | -7 | 3.6 | TAGAGTAATGGCTATCGAAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aceF | ||||
| Ortholog function: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0115 | -156 | 3.7 | AAACGTTATATATGTCAAGTTG |
| -131 | 3.8 | AAATGTGCACAGTTTCATGATT | ||
| Salmonella typhimurium LT2 | STM0153 | -157 | 3.5 | AAACATGATTTCTGTAAAATTG |
| -120 | 3.2 | TTTACTGATTTCAATCAAAACC | ||
| -79 | 3 | CTTATTAAGCTTTCTCACGAAA | ||
| -54 | 3.4 | TAATGGGACAGGTTCCAGATAA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03258 | -180 | 3.2 | ATTTGTGCATAGTTACATCTTT |
| -157 | 3.1 | AAACGTTATTTCTGTAATCTTG | ||
| -148 | 3.3 | TTCTGTAATCTTGTTAAAATGT | ||
| -120 | 3.2 | TTTACTGATTTCAATCAAAACC | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00119 | -155 | 3.2 | AAATGTTATTTCTGTAAGGTTG |
| -118 | 3.2 | TTTACTGATTTCAATCAAAACC | ||
| Enterobacter sp. 638 | Ent638_0661 | -120 | 3.2 | TTTACTGATTTCAATCAAAACC |
| -77 | 3.1 | TATTGTATTTTCTGGCGAAAAT | ||
| -68 | 3 | TTTAGCGATACGAATATGAAAT | ||
| Erwinia amylovora ATCC 49946 | EAM_0748 | -198 | 3.3 | TAAAGCGATCGGATTTAACAAT |
| Yersinia pestis KIM | y0768 | -151 | 4.2 | AAATGTGCTGGGTTTCATGATT |
| -139 | 3.3 | TTTCATGATTTCGGTCAAGGTC | ||
| -74 | 3.4 | TTTTGAAATTGGTATTACCAAT | ||
| Serratia proteamaculans 568 | Spro_4010 | -132 | 3.1 | AAATGTGCGGGTAACCTGATTT |
| -56 | 3.4 | TTTTGAAATTGGTATTACCAAT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3788 | -120 | 3.7 | ATTGGTGATTTAGCTCAAGGTC |
| -55 | 3.4 | TTTTGAAATTGGTATTACCAAT | ||
| Edwardsiella tarda EIB202 | ETAE_0660 | -143 | 3.2 | TTTCATGATTTACATCAATAGT |
| Proteus mirabilis HI4320 | PMI2045 | -218 | 3.1 | TGTTTTTAATCTTTTCTAATAA |
| -199 | 4.4 | TAATGCGATCTAGTTATCAAAT | ||
| -181 | 4.2 | AAATTTGATGAATTTATCAAAT | ||
| -158 | 3 | ATTTGTTAAAATTTGCAGGTTT | ||
| -138 | 3.9 | TTTTATGATTTCGCTCAACAAC | ||
| -95 | 3.1 | CTTTGTTACTTTATTATCCATT | ||
| -89 | 3.1 | TACTTTATTATCCATTACATTA | ||
|
Position: -150
Score: 3.4 Sequence: TTTTGTAAACGGATTAACAAGT
Locus tag: EpC_08180
|
||||
| EpC_08180 | -150 | 3.4 | TTTTGTAAACGGATTAACAAGT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: acnB | ||||
| Ortholog function: Aconitate hydratase 2 (EC 4.2.1.3) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0118 | -144 | 3.5 | TTTTGTAAACAGATTAACACCT |
| Salmonella typhimurium LT2 | STM0158 | -157 | 3.9 | TTTTGTAAACAGATTAACACTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00124 | -260 | 3.5 | TTTTGTAAACAGATTAACACCT |
| Yersinia pestis KIM | y0771 | -276 | 4.3 | TTATGTGAACGAATTAACACTG |
| Serratia proteamaculans 568 | Spro_4008 | -192 | 3.9 | TTATGTGAACGAATTAACAACC |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3778 | -163 | 4.3 | TTATGTGAACGAATTAACAATC |
| Proteus mirabilis HI4320 | PMI2040 | -177 | 4.5 | TTATGTGAACGAATTAACATAG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3619 | -261 | 3.6 | TTCTGTGAACGAATTAACATCG |
|
Position: -219
Score: 5.1 Sequence: TTTTGTGATTAAAGTCACACTT
Locus tag: EpC_09240
|
||||
| EpC_09240 | -219 | 5.1 | TTTTGTGATTAAAGTCACACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: tsx | ||||
| Ortholog function: Nucleoside-specific channel-forming protein Tsx precursor | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0411 | -250 | 3.7 | TTTTGTTACTCTGCTTACATCA |
| -129 | 3.9 | AACTGTGAAACGAAACATATTT | ||
| Salmonella typhimurium LT2 | STM0413 | -129 | 4 | ATATGTGAAACAAGACATATTT |
| Citrobacter koseri ATCC BAA-895 | CKO_02750 | -131 | 3.7 | ATCTGTGAAACAAGACATATTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00363 | -131 | 3.8 | TTATGTGAAACAACACGTATTT |
| Enterobacter sp. 638 | Ent638_0879 | -124 | 4.1 | ATATGTGAAACAACACATATTT |
| Erwinia amylovora ATCC 49946 | EAM_2589 | -218 | 5.3 | ATTTGTGATAAAAATCACACTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3796 | -172 | 5.5 | TTATGTGATTAAAATCACATAA |
| Edwardsiella tarda EIB202 | ETAE_2935 | -245 | 4.6 | TAATTTGATGAGAATCTCAATT |
|
Position: -236
Score: 3.5 Sequence: TATTGTGATTGAAAACCGGTAT
Position: -154
Score: 3.6 Sequence: TATTTTGTTGCGCCTAACCCAT
Position: -66
Score: 3.8 Sequence: ATTTTGGATATCTTTTACATAA
Locus tag: EpC_09710
|
||||
| EpC_09710 | -236 | 3.5 | TATTGTGATTGAAAACCGGTAT | |
| -154 | 3.6 | TATTTTGTTGCGCCTAACCCAT | ||
| -66 | 3.8 | ATTTTGGATATCTTTTACATAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: flhD | ||||
| Ortholog function: DNA-binding transcriptional dual regulator with FlhC | ||||
| Proteus mirabilis HI4320 | PMI1672 | -158 | 3.6 | TGAAATGATCGTAATCAAGTAA |
|
Position: -103
Score: 3.4 Sequence: TTTTGTGACCTGCCTTAAAAGC
Locus tag: EpC_10230
|
||||
| EpC_10230 | -103 | 3.4 | TTTTGTGACCTGCCTTAAAAGC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: csiE | ||||
| Ortholog function: Stationary phase inducible protein CsiE | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2535 | -104 | 3.5 | TTCTGTGACGCTTGCCAACATT |
| Salmonella typhimurium LT2 | STM2553 | -106 | 3.8 | TTCTGTGACACTCCTCAGCATT |
| Citrobacter koseri ATCC BAA-895 | CKO_00245 | -105 | 3.4 | TTCTGTGATGCTCGCCAGCATT |
| -42 | 3.6 | TTTAGCTATCCTTATCAAACAA | ||
| Erwinia amylovora ATCC 49946 | EAM_2496 | -103 | 3.4 | TTTTGTGACCTGCCTTAAAAGC |
| Yersinia pestis KIM | y1328 | -161 | 4.1 | TAATGTAACACATAGCGCATTA |
| Serratia proteamaculans 568 | Spro_3633 | -276 | 3.4 | AAAGGTGGTGTTCATATCAATA |
|
Position: -346
Score: 3.9 Sequence: TTTTGTGGAGTACGTCAAACTT
Locus tag: EpC_11440
|
||||
| EpC_11440 | -346 | 3.9 | TTTTGTGGAGTACGTCAAACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ptsH | ||||
| Ortholog function: PTS system phosphocarrier protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2415 | -209 | 3.9 | TTTTATGATTTGGTTCAATTCT |
| Salmonella typhimurium LT2 | STM2431 | -209 | 4.4 | TTTTATGATTTGGTTCAAATCT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02762 | -206 | 4 | TTTTATGATTTGGTTCAAGTCT |
| Enterobacter sp. 638 | Ent638_2943 | -271 | 4.4 | TTTTGTGGTCCACTTCAAACTT |
| -144 | 4 | TTTTATGATTTGGTTCAAGTCT | ||
| Serratia proteamaculans 568 | Spro_3448 | -149 | 3.6 | TTTTTTGATCTGAAGTGCCAAA |
| Proteus mirabilis HI4320 | PMI1828 | -275 | 4.4 | TTTTGTGGTAGAGATCAAACTT |
| -115 | 3.6 | TAACGTAACATGGCTTATATTA | ||
|
Position: -33
Score: 3.6 Sequence: TTAATTTATTAAATTCATATAT
Locus tag: EpC_11510
|
||||
| EpC_11510 | -33 | 3.6 | TTAATTTATTAAATTCATATAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yfeR | ||||
| Ortholog function: transcriptional regulator, LysR family | ||||
| Salmonella typhimurium LT2 | STM2424 | -37 | 3.6 | AAAATTGATTTATTGCATCTAT |
| Citrobacter koseri ATCC BAA-895 | CKO_00385 | -37 | 3.6 | AAAATTGATTTATTGCATCTAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02755 | -112 | 3.6 | AAAATTGATTTATTGCATCTAT |
| Erwinia amylovora ATCC 49946 | EAM_2384 | -33 | 3.7 | TTAATTTATTGAATTCATATAT |
| Serratia proteamaculans 568 | Spro_3441 | -33 | 3.6 | TTGATTTATTTAATTCATATAT |
|
Position: -269
Score: 4.1 Sequence: TTGAGTGACAGAAATCACACTC
Position: -194
Score: 3.9 Sequence: TTTTGTTAAGCAGATCTCTTTT
Locus tag: EpC_11990
|
||||
| EpC_11990 | -269 | 4.1 | TTGAGTGACAGAAATCACACTC | |
| -194 | 3.9 | TTTTGTTAAGCAGATCTCTTTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fadL | ||||
| Ortholog function: Long-chain fatty acid transport protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2344 | -269 | 4.8 | ATAAGTGACCGAAATCACACTT |
| -247 | 3.9 | AAAAATGATCTAAAACAAAATT | ||
| Salmonella typhimurium LT2 | STM2391 | -262 | 4.8 | TTAAGTGACCGAAATCACACTT |
| -240 | 3.9 | AAAAATGATCTAAAACAAAAAT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00446 | -263 | 4.8 | ATAAGTGACCGAAATCACACTT |
| -241 | 3.9 | AAAAATGATCTAAAACAAAAAT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02726 | -264 | 4.7 | TTAAGTGACAGAAATCACACTT |
| -242 | 3.9 | AAAAATGATCTAAAACAAAAAT | ||
| Enterobacter sp. 638 | Ent638_2884 | -269 | 4.2 | GTAAGTGACCGATATCACACTA |
| -247 | 4 | AAAAATGATCTAGCGCAAAAAT | ||
| -214 | 3.7 | ATGAGTGCGACGGCTCGCATTT | ||
| Erwinia amylovora ATCC 49946 | EAM_2348 | -194 | 3.9 | TTTTGTTAAGCAGATCTCTTTT |
| Serratia proteamaculans 568 | Spro_3381 | -271 | 5.1 | TTAAGTGATGGAAATCACAAAT |
| -196 | 3.8 | TTTTGTTAGCCAGATCTCTCTT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3081 | -332 | 3.8 | AATTTTTATCTTCCTTATATTT |
| -262 | 4.9 | TTTAGTGATATCAGTCACATTA | ||
| Proteus mirabilis HI4320 | PMI1810 | -326 | 3.7 | AAGTGTTAATTATCTATCATAA |
| -186 | 4.2 | TAATGTTAACTAAATCCCAAAT | ||
|
Position: -76
Score: 3.8 Sequence: TATTTTGATTTCTTTAAGGTAA
Position: -44
Score: 3.9 Sequence: TTGTGTGTTTCTTTTAAAATTT
Locus tag: EpC_12510
|
||||
| EpC_12510 | -76 | 3.8 | TATTTTGATTTCTTTAAGGTAA | |
| -44 | 3.9 | TTGTGTGTTTCTTTTAAAATTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yfbV | ||||
| Ortholog function: putative cytoplasmic protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2295 | -263 | 3.6 | ATTTATGATTAACATCATGCAC |
| -54 | 4.1 | AGTTGTGAATTTGCACAAATTT | ||
| Erwinia amylovora ATCC 49946 | EAM_2300 | -44 | 4 | TTGTGTGTTTTTTTTAAAATTT |
| Edwardsiella tarda EIB202 | ETAE_2396 | -34 | 3.6 | TTTTTTAACTCTTATCGAATAA |
| Proteus mirabilis HI4320 | PMI1770 | -290 | 3.7 | ATTAATGATACGCATCATGCTT |
| -260 | 3.6 | AAACTTGATGCTAATTATAGTT | ||
|
Position: -177
Score: 4.1 Sequence: AAATGAGAAATACCTCTCAAAA
Locus tag: EpC_13250
|
||||
| EpC_13250 | -177 | 4.1 | AAATGAGAAATACCTCTCAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yejG | ||||
| Ortholog function: hypothetical protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2181 | -158 | 3.7 | AAACGTGACCACGCCCGCAGAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02614 | -204 | 3.8 | AAAGTTGTTTTGGATCACAGAA |
| Erwinia amylovora ATCC 49946 | EAM_2233 | -177 | 3.6 | AAATGAGCATTACTTCTCAAAA |
| Yersinia pestis KIM | y2914 | -238 | 4.4 | AAATGGGATCTGAATCCCAAAT |
| Serratia proteamaculans 568 | Spro_3250 | -214 | 4.2 | AAATGCGAGCTGAGTCGCAAAA |
| -121 | 4.1 | GCTTGTGATGTTTTTTACATTT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2740 | -178 | 4 | ATTCGTGATCAGTTTGGCATTA |
| -101 | 3.8 | TGTTGTTTTTTTGTTCACGAAA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2865 | -185 | 4.1 | AAATGAGAGATTGATCTCACTT |
| -183 | 3.6 | ATGAGAGATTGATCTCACTTTT | ||
| -141 | 3.8 | TAATGTAATACTATAAACACAA | ||
|
Position: -179
Score: 4.4 Sequence: AAATGTGCTGGCTGTCAAAAAT
Locus tag: EpC_13360
|
||||
| EpC_13360 | -179 | 4.4 | AAATGTGCTGGCTGTCAAAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fruB | ||||
| Ortholog function: PTS system, fructose-specific IIA/FPr component | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2169 | -178 | 4.3 | AATTGTGCAGCACATCAAACTT |
| Salmonella typhimurium LT2 | STM2206 | -177 | 4.6 | AAATGTGCTTCACCTCAAAAAA |
| Citrobacter koseri ATCC BAA-895 | CKO_00613 | -50 | 4.1 | AAGTGTGCTTTATCTCTAAATT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02600 | -177 | 3.5 | AAGTGTGCAGTACCTCTAAGTT |
| Enterobacter sp. 638 | Ent638_2763 | -178 | 4.3 | AAATGTGCTGCACTTCTAAATT |
| Erwinia amylovora ATCC 49946 | EAM_2223 | -179 | 4.4 | AAATGTGCTGGCTGTCAAAAAT |
| Yersinia pestis KIM | y2887 | -178 | 4.1 | AAATGTGCGGAATGTCAAAAAT |
| Serratia proteamaculans 568 | Spro_3230 | -177 | 4 | AAGTGTGCGTGAGGTCAAAAAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2729 | -180 | 4.1 | AAATGTGCGTGATGTCAAAATT |
| Edwardsiella tarda EIB202 | ETAE_2303 | -199 | 4.1 | AAATGTGCTGAAGGTCTAAAAT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1992 | -180 | 4.7 | AAATGTGAGTAATCTCAAAAAA |
|
Position: -103
Score: 4.5 Sequence: TTTGGTGATGCGTTTCACTTAT
Position: -73
Score: 4.7 Sequence: TAGAGCGATTTAGATCACATAT
Locus tag: EpC_13580
|
||||
| EpC_13580 | -103 | 4.5 | TTTGGTGATGCGTTTCACTTAT | |
| -73 | 4.7 | TAGAGCGATTTAGATCACATAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cdd | ||||
| Ortholog function: cytidine deaminase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2143 | -128 | 4.3 | ATTTGCGATGCGTCGCGCATTT |
| -78 | 5.1 | TAATGAGATTCAGATCACATAT | ||
| Salmonella typhimurium LT2 | STM2183 | -128 | 4.2 | ATTTGCGATACGTCGCGCATTT |
| -78 | 4.8 | CAATGAGATTTAGATCACATAT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00646 | -128 | 4.3 | ATTTGCGATGCGTCGCGCATTT |
| -78 | 4.8 | CAATGAGATTTGGATCACATAT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02584 | -78 | 4.4 | GAATGAGATATTCATCACATAT |
| Enterobacter sp. 638 | Ent638_2746 | -127 | 4.2 | ATTTGCGATGCGTCGCGCAATT |
| -77 | 4.9 | TAATGAGAACTGGATCACATAT | ||
| Erwinia amylovora ATCC 49946 | EAM_2202 | -124 | 3.9 | ACTTGCGATAAGTCTCTCATTT |
| -104 | 4.1 | TTTGGTGATGCATTTCATTTAT | ||
| -74 | 4.7 | TAGAGCGATTTAGATCACATAT | ||
| Yersinia pestis KIM | y2657 | -75 | 5 | TAATGAGATATAAATCACAATT |
| Serratia proteamaculans 568 | Spro_1568 | -127 | 4.1 | ACTTGCGATACATCTCGCAATT |
| -77 | 4.5 | TAAAGAGATTTACATCACACTT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2830 | -130 | 4.6 | AATTGAGATACATCTCGCATTT |
| -79 | 4.5 | TAAAGAGATTCCGATCACAATT | ||
| Edwardsiella tarda EIB202 | ETAE_1162 | -76 | 4.9 | AAAAGTGATTATTATCACAAAT |
| Proteus mirabilis HI4320 | PMI0643 | -132 | 4.4 | ATTTGAGATGTATCTCCCAATT |
| -82 | 5.1 | AAATATGATTTTAATCACATAT | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1547 | -75 | 4.7 | CTATATGATATTTATCACATTA |
|
Position: -100
Score: 4.4 Sequence: CAGTTTGATTTAGCTCAAATTA
Locus tag: EpC_14860
|
||||
| EpC_14860 | -100 | 4.4 | CAGTTTGATTTAGCTCAAATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yedJ | ||||
| Ortholog function: hypothetical protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1962 | -287 | 4.6 | TGGTGTGATCAGGCGCACATTA |
| Salmonella typhimurium LT2 | STM1993 | -70 | 5.5 | AAATGTGATTAATATCACATTA |
| -34 | 4.4 | TCATATGACTTACATCACAAAA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00980 | -168 | 3.8 | TTTTGTGAATGTTTTATCGTAA |
| Erwinia amylovora ATCC 49946 | EAM_2082 | -129 | 3.8 | TGATGTAATGAGCAACAAATAA |
| -101 | 4.4 | AAGTTTGATGTGGCTAAAATTA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0518 | -156 | 5.6 | AAATGTGATGTGAATCACACAA |
|
Position: -347
Score: 4.2 Sequence: AAATGTGACCCCCGCCTCATTA
Locus tag: EpC_15060
|
||||
| EpC_15060 | -347 | 4.2 | AAATGTGACCCCCGCCTCATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: putP | ||||
| Ortholog function: Proline/sodium symporter PutP (TC 2.A.21.2.1) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1015 | -207 | 3.6 | AAATGTGAGAGAGTGCAACCTG |
| Salmonella typhimurium LT2 | STM1125 | -204 | 3.6 | AAATGTGAGAGAGTGCAACCTG |
| Citrobacter koseri ATCC BAA-895 | CKO_02041 | -80 | 3.6 | AAATGTGAGAGAGTGCAACCTG |
| Enterobacter sp. 638 | Ent638_1542 | -249 | 3.7 | TTTTATGCGGCACTTAACACTT |
| Serratia proteamaculans 568 | Spro_2930 | -211 | 3.9 | AAATGTGACGCAGGGTAAACTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4218 | -130 | 3.7 | TTGTGCAACCTTGTTAACAAAT |
| Proteus mirabilis HI4320 | PMI1615 | -220 | 3.8 | TAGTGTGAAGTTACATACAAAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1958 | -243 | 4.4 | AAATGTGATTCAGTAAACGTTT |
|
Position: -97
Score: 3.9 Sequence: TTTAGTGATGGGCTTCGCAACC
Locus tag: EpC_16110
|
||||
| EpC_16110 | -97 | 3.9 | TTTAGTGATGGGCTTCGCAACC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fadD | ||||
| Ortholog function: long-chain-fatty-acid--CoA ligase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1805 | -131 | 3.7 | AATAGTGACGCGCTTCGCAACC |
| Salmonella typhimurium LT2 | STM1818 | -131 | 3.7 | AATAGTGACGCGCTTCGCAACC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02322 | -97 | 3.7 | AATAGTGACGCGCTTCGCAACC |
| Erwinia amylovora ATCC 49946 | EAM_1956 | -130 | 3.9 | TTTAGTGATGCGCTTCGCAACC |
| Yersinia pestis KIM | y2236 | -80 | 4.1 | AATAGTGATGTATATCTCAACC |
| Serratia proteamaculans 568 | Spro_2760 | -99 | 3.9 | ATTAGTGACGTACATCGCAACC |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2372 | -132 | 3.8 | ATTAGTGATCGTTCTCGCAACC |
| -75 | 3.7 | TAAAATAATGTTAATAACAATA | ||
| Proteus mirabilis HI4320 | PMI1166 | -121 | 4.4 | TTTAGTGATACACTTCGCATCT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2134 | -288 | 3.8 | AAATGCTATCTTAAGCAAAAAA |
| -137 | 4 | ATTAGTGATGTGTATCTCAACC | ||
|
Position: -320
Score: 3.9 Sequence: ATGTGTTATATCCAGCATAAAT
Locus tag: EpC_16210
|
||||
| EpC_16210 | -320 | 3.9 | ATGTGTTATATCCAGCATAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ycgB | ||||
| Ortholog function: hypothetical protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1188 | -235 | 4.4 | TATGGTGAGCTGGCTCACATCT |
| Salmonella typhimurium LT2 | STM1804.S | -243 | 4.9 | TATGGTGACGTGCTTCACATAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02310 | -174 | 4 | TATGGTGACTTAACTCACAGCA |
| Enterobacter sp. 638 | Ent638_2364 | -236 | 4.2 | TATGGTGACTTACCTCACACCT |
|
Position: -211
Score: 4 Sequence: ATTTATGCTGGATATAACACAT
Locus tag: EpC_16220
|
||||
| EpC_16220 | -211 | 4 | ATTTATGCTGGATATAACACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dadA | ||||
| Ortholog function: D-amino acid dehydrogenase small subunit | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1189 | -116 | 4.7 | AGATGTGAGCCAGCTCACCATA |
| Salmonella typhimurium LT2 | STM1803 | -107 | 4.6 | ATATGTGAAGCACGTCACCATA |
| Citrobacter koseri ATCC BAA-895 | CKO_01193 | -107 | 4.5 | AGATGTGAGGTGCGTCACCATA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02309 | -106 | 4.1 | TGCTGTGAGTTAAGTCACCATA |
| Enterobacter sp. 638 | Ent638_2363 | -107 | 4.3 | AGGTGTGAGGTAAGTCACCATA |
| Serratia proteamaculans 568 | Spro_2746 | -113 | 4.6 | AATTGTGAATGTTGTCACGTTT |
| Proteus mirabilis HI4320 | PMI1509 | -121 | 4.7 | AAATGTGATTTGACTCTAAAAT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2561 | -114 | 5.4 | AATTGTGATCTAAATCATAAAT |
|
Position: -223
Score: 5.4 Sequence: AATTGTGATGCAGATCACCATT
Locus tag: EpC_16320
|
||||
| EpC_16320 | -223 | 5.4 | AATTGTGATGCAGATCACCATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gapA | ||||
| Ortholog function: glyceraldehyde-3-phosphate dehydrogenase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1779 | -226 | 5.3 | AATCGTGATGAAAATCACATTT |
| Salmonella typhimurium LT2 | STM1290 | -226 | 4.8 | AATCGTGACTGATGTCACATTA |
| Citrobacter koseri ATCC BAA-895 | CKO_01800 | -226 | 5 | AATCGTGATCGGAATCACGTTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01197 | -225 | 5.2 | AATTGTGACTTAAATCACGTTT |
| Enterobacter sp. 638 | Ent638_1675 | -225 | 5.7 | AATTGTGATCTTTCTCACATAT |
| Erwinia amylovora ATCC 49946 | EAM_1931 | -215 | 5.4 | AATTGTGATGCAGATCACCATT |
| Yersinia pestis KIM | y2165 | -218 | 5.1 | AAATGTGATAAAAATCGCAAAT |
| Serratia proteamaculans 568 | Spro_2728 | -227 | 5.6 | ATATGTGATACCGATCACATAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2344 | -235 | 5.8 | AATTGTGATGTGTATCACATAA |
| Edwardsiella tarda EIB202 | ETAE_1483 | -227 | 5.1 | TTTTGTGATGAGCATCACAAAC |
| Proteus mirabilis HI4320 | PMI1504 | -226 | 5.6 | AAATGTGATACATTTCACATAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2558 | -224 | 5.4 | TATTGTGATGTGACTCGCATAT |
|
Position: -137
Score: 5.2 Sequence: AATGGTGATCTGCATCACAATT
Locus tag: EpC_16330
|
||||
| EpC_16330 | -137 | 5.2 | AATGGTGATCTGCATCACAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: msrB | ||||
| Ortholog function: methionine sulfoxide reductase B | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1778 | -137 | 5.2 | AAATGTGATTTTCATCACGATT |
| Salmonella typhimurium LT2 | STM1291 | -107 | 4.7 | TAATGTGACATCAGTCACGATT |
| Citrobacter koseri ATCC BAA-895 | CKO_01799 | -107 | 4.9 | AAACGTGATTCCGATCACGATT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01198 | -135 | 5.1 | AAACGTGATTTAAGTCACAATT |
| Enterobacter sp. 638 | Ent638_1676 | -137 | 5.2 | ATATGTGAGAAAGATCACAATT |
| Erwinia amylovora ATCC 49946 | EAM_1930 | -137 | 5.2 | AATGGTGATCTGCATCACAATT |
| Yersinia pestis KIM | y2164 | -85 | 5.1 | ATTTGCGATTTTTATCACATTT |
| Serratia proteamaculans 568 | Spro_2727 | -143 | 5.7 | ATATGTGATCGGTATCACATAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2343 | -135 | 5.6 | TTATGTGATACACATCACAATT |
| Edwardsiella tarda EIB202 | ETAE_1484 | -91 | 4.9 | GTTTGTGATGCTCATCACAAAA |
| Proteus mirabilis HI4320 | PMI1503 | -137 | 5.3 | TTATGTGAAATGTATCACATTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2557 | -267 | 4.6 | ATATGCGAGTCACATCACAATA |
|
Position: -261
Score: 4.2 Sequence: TTTTGCGAAATAGTTAACACAA
Locus tag: EpC_17370
|
||||
| EpC_17370 | -261 | 4.2 | TTTTGCGAAATAGTTAACACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ydgD | ||||
| Ortholog function: hypothetical protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1598 | -93 | 4 | TTATCTGATTTTACTCCCACTT |
| Salmonella typhimurium LT2 | STM1484 | -93 | 4 | TTATCTGATTTTACTCCCACTT |
| Citrobacter koseri ATCC BAA-895 | CKO_01604 | -95 | 4 | TTATCTGATTTTACTCCCACTT |
| Enterobacter sp. 638 | Ent638_1914 | -53 | 4.1 | TATTTTAATAGGGTTCACTTTT |
| Yersinia pestis KIM | y2013 | -160 | 3.6 | TTTTTTTATTTATAGCACGAAC |
|
Position: -143
Score: 5.2 Sequence: TTTTGTGTTGTAAATCACATTT
Position: -101
Score: 4.2 Sequence: ATCTGTGAAGTGTTTCACCATG
Locus tag: EpC_18470
|
||||
| EpC_18470 | -143 | 5.2 | TTTTGTGTTGTAAATCACATTT | |
| -101 | 4.2 | ATCTGTGAAGTGTTTCACCATG | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mlc | ||||
| Ortholog function: ROK family transcriptional regulatory protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1594 | -108 | 4.1 | AAATGTGCTGTTAATCACATGC |
| Salmonella typhimurium LT2 | STM1488 | -65 | 3.8 | AGTATTGAAGTGTTTCACCATA |
| Citrobacter koseri ATCC BAA-895 | CKO_01593 | -107 | 3.6 | AAaTGTGcagTAaATCACAcgg |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01574 | -104 | 3.8 | AAATGTGCGGTAAATCACAAGG |
| Enterobacter sp. 638 | Ent638_1919 | -107 | 3.8 | AAATGTGCGGTAAATCACAAGG |
| Erwinia amylovora ATCC 49946 | EAM_1710 | -143 | 4.9 | TTATGTGCTGTAAATCACATTC |
| Yersinia pestis KIM | y2110 | -146 | 4.8 | TTATGTGCAGCAAATCACATAA |
| Serratia proteamaculans 568 | Spro_2283 | -111 | 4.8 | ATTTGTGCAGCAAATCACATAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2258 | -226 | 4.4 | ATATGCGCGCTAAATCACATAA |
| Edwardsiella tarda EIB202 | ETAE_1713 | -113 | 4.8 | ATTTGTGCACTTAATCACATAA |
| Proteus mirabilis HI4320 | PMI1292 | -126 | 4.7 | ATATGTGCTTTCCATCACGATT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2226 | -119 | 4.8 | TTTCGTGCTGAATATCACATAT |
|
Position: -252
Score: 3.9 Sequence: TTATGCGATCGCCTTCAAATGT
Position: -54
Score: 3.7 Sequence: TTTTGTTACCGATTACACCTTC
Locus tag: EpC_18590
|
||||
| EpC_18590 | -252 | 3.9 | TTATGCGATCGCCTTCAAATGT | |
| -54 | 3.7 | TTTTGTTACCGATTACACCTTC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: araF | ||||
| Ortholog function: L-arabinose-binding periplasmic protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1901 | -163 | 4.2 | CGATGTGATATTGCTCTCCTAT |
| Citrobacter koseri ATCC BAA-895 | CKO_01050 | -164 | 4 | CGGTGTGATGCCGCTCTCCTAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02396 | -161 | 4 | CGATGTGATAATGCTCTCGTAT |
| -72 | 3.6 | TGTTTTGATGACGATTAAATTG | ||
| Enterobacter sp. 638 | Ent638_2476 | -162 | 3.7 | CGGTGTGATGGCGCTCTCTTAT |
| Erwinia amylovora ATCC 49946 | EAM_1698 | -251 | 4.3 | TTATGTGATGGCCTTCATATGT |
| Yersinia pestis KIM | y2096 | -283 | 4.3 | TTTTGTGATGTCAGTCAAAAGT |
| Serratia proteamaculans 568 | Spro_2245 | -251 | 3.8 | TTTTGTGACGGCTGTCATAAGT |
|
Position: -131
Score: 3.9 Sequence: ACATTTGAAGGCGATCGCATAA
Locus tag: EpC_18600
|
||||
| EpC_18600 | -131 | 3.9 | ACATTTGAAGGCGATCGCATAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: araB | ||||
| Ortholog function: L-ribulokinase | ||||
| Erwinia amylovora ATCC 49946 | EAM_1697 | -131 | 4.1 | ACATATGAAGGCCATCACATAA |
| Yersinia pestis KIM | y2095 | -146 | 4.3 | ACTTTTGACTGACATCACAAAA |
| Serratia proteamaculans 568 | Spro_2244 | -132 | 3.9 | ACTTATGACAGCCGTCACAAAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2274 | -133 | 3.9 | ACCTTTGACCAGCTTCACAAAA |
|
Position: -56
Score: 3.6 Sequence: TTGTGTAATACTTGTAACGCTA
Locus tag: EpC_19020
|
||||
| EpC_19020 | -56 | 3.6 | TTGTGTAATACTTGTAACGCTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lpp | ||||
| Ortholog function: major outer membrane lipoprotein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1677 | -56 | 3.6 | TTGTGTAATACTTGTAACGCTA |
| Salmonella typhimurium LT2 | STM1377 | -56 | 3.6 | TTGTGTAATACTTGTAACGCTA |
| Citrobacter koseri ATCC BAA-895 | CKO_01710 | -56 | 3.6 | TTGTGTAATACTTGTAACGCTA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02134 | -56 | 3.6 | TTGTGTAATACTTGTAACGCTA |
| Enterobacter sp. 638 | Ent638_1767 | -56 | 3.6 | TTGTGTAATACTTGTAACGCTA |
| Erwinia amylovora ATCC 49946 | EAM_1656 | -56 | 3.6 | TTGTGTAATACTTGTAACGCTA |
| Serratia proteamaculans 568 | Spro_2186 | -55 | 3.6 | TTGTGTAATACTTGTAACGCTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1866 | -56 | 3.6 | TTGTGTAATACTTGTAACGCTA |
| Edwardsiella tarda EIB202 | ETAE_1852 | -55 | 3.6 | TTGTGTAATACTTGTAACGCTA |
| Proteus mirabilis HI4320 | PMI1409 | -200 | 4.4 | TTTTGTGAAATAACACGCATTT |
|
Position: -98
Score: 4 Sequence: AATTGTGATCGCTGACTCATCA
Locus tag: EpC_19730
|
||||
| EpC_19730 | -98 | 4 | AATTGTGATCGCTGACTCATCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ychH | ||||
| Ortholog function: membrane protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1205 | -105 | 4.5 | AATTGTGATCACGCCCGCACAT |
| Salmonella typhimurium LT2 | STM1782 | -105 | 4.4 | ATTTGTGATCGCACCCGCACTT |
| Citrobacter koseri ATCC BAA-895 | CKO_01260 | -104 | 4.1 | AATTGTGATCGCCCACGCACTC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02241 | -100 | 4.1 | TAATGTGATCGTGGACGCACTC |
| Enterobacter sp. 638 | Ent638_2343 | -119 | 3.7 | TGTTGTGACGAGAGTCATTAAT |
| -101 | 4 | TAATGTGATCATTCACGCAACT | ||
| Erwinia amylovora ATCC 49946 | EAM_1581 | -97 | 3.9 | AAATGTGATCGCTGACTCATCA |
| Yersinia pestis KIM | y2296 | -145 | 3.9 | AGTTGTGATCGCTACCGCAACA |
| Serratia proteamaculans 568 | Spro_1985 | -117 | 4.2 | ATTTGTGATCGCCTACGCAATC |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2185 | -275 | 3.6 | TAGCGTGATTATGAGAACGCTA |
| -117 | 3.8 | ATCTGTGATCCCTCCCGCAATC | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2065 | -189 | 4.1 | AGTTGTGATCGTGTCCGCAATG |
|
Position: -74
Score: 3.6 Sequence: AATTTTTACTCGTAGCGCAAAT
Locus tag: EpC_21230
|
||||
| EpC_21230 | -74 | 3.6 | AATTTTTACTCGTAGCGCAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rcsA | ||||
| Ortholog function: Colanic acid capsular biosynthesis activation accesory protein RcsA, co-regulator with RcsB | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1951 | -201 | 4 | TGTTTTAAGCTCACTCACATAT |
| Salmonella typhimurium LT2 | STM1982 | -201 | 4 | TGTTTTTACTTCACTCACATAA |
| Citrobacter koseri ATCC BAA-895 | CKO_00992 | -200 | 4.1 | TGTTTTTACCTTACTCACATAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02421 | -195 | 3.7 | TGTTTTTAATTCGGTCACACTA |
| Enterobacter sp. 638 | Ent638_2542 | -206 | 4.3 | TGTTTTTATGCCCTTCACAATA |
|
Position: -162
Score: 3.7 Sequence: AAAATTGACCAGGATCAATTTT
Position: -67
Score: 3.6 Sequence: TAAGGTTATTCTATTAACCTTT
Locus tag: EpC_21330
|
||||
| EpC_21330 | -162 | 3.7 | AAAATTGACCAGGATCAATTTT | |
| -67 | 3.6 | TAAGGTTATTCTATTAACCTTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ndh | ||||
| Ortholog function: NADH dehydrogenase (EC 1.6.99.3) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1109 | -154 | 3.9 | AAACTTGATTAACATCAATTTT |
| Salmonella typhimurium LT2 | STM1211 | -154 | 4.1 | AAACTTGATGCACATCAATTTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01106 | -152 | 4.1 | AAACTTGATGCACATCAATTTT |
| Enterobacter sp. 638 | Ent638_1624 | -153 | 4 | AAACTTGATTCATATCAATTTT |
| Erwinia amylovora ATCC 49946 | EAM_1473 | -55 | 3.7 | TAAGGTTATTTTATTAACCTTT |
| Yersinia pestis KIM | y1777 | -152 | 3.8 | AAAGTTGATATATATCAATTTT |
| Serratia proteamaculans 568 | Spro_1926 | -153 | 4.3 | AAGTTTGATGTACATCAATTTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1815 | -153 | 4 | TAAATTGATATATATCAATTTT |
| Edwardsiella tarda EIB202 | ETAE_2070 | -166 | 4.3 | TTATTTGATTTGAATCAATTTT |
| Proteus mirabilis HI4320 | PMI0875 | -157 | 4.6 | TTTTTTGATATAAATCAACTTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2821 | -154 | 3.8 | GAATTTGATGTTGTTCAATTTT |
|
Position: -164
Score: 4.6 Sequence: AAACGTGATAGTCATCAAACAA
Locus tag: EpC_21400
|
||||
| EpC_21400 | -164 | 4.6 | AAACGTGATAGTCATCAAACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ptsG | ||||
| Ortholog function: PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1101 | -154 | 4.4 | AAACGTGATAGCCGTCAAACAA |
| Salmonella typhimurium LT2 | STM1203 | -155 | 4.4 | AAACGTGATAGCCGTCAAACAA |
| Citrobacter koseri ATCC BAA-895 | CKO_01957 | -229 | 4.4 | AAACGTGATAGCCGTCAAACAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01099 | -155 | 4.4 | AAACGTGATAGCCGTCAAACAA |
| Enterobacter sp. 638 | Ent638_1616 | -155 | 4.4 | AAACGTGATAGCCGTCAAACAA |
| Erwinia amylovora ATCC 49946 | EAM_1466 | -162 | 4.6 | AAACGTGATAGCCATCAAACAA |
| Yersinia pestis KIM | y1767 | -166 | 4.4 | AAACGTGACGGCAATCAAACAT |
| Serratia proteamaculans 568 | Spro_1914 | -164 | 4.4 | AAACGTGACTGTCATCAAACAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1805 | -162 | 4.6 | AAACGTGATAGCAATCAAACAT |
| Proteus mirabilis HI4320 | PMI2292 | -156 | 4.5 | AAACGTGACAGCTATCATATAT |
|
Position: -346
Score: 3.9 Sequence: AAACGAGATTTTTCTCAGAAAT
Locus tag: EpC_22360
|
||||
| EpC_22360 | -346 | 3.9 | AAACGAGATTTTTCTCAGAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ompA | ||||
| Ortholog function: outer membrane protein A | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0957 | -188 | 4 | ATGCCTGACGGAGTTCACACTT |
| Salmonella typhimurium LT2 | STM1070 | -188 | 4.3 | ATGTCTGACGGAGTTCACACTT |
| Citrobacter koseri ATCC BAA-895 | CKO_02111 | -164 | 4 | ATGCCTGACGGAGTTCACACTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00986 | -185 | 3.9 | ATGCCTGACAGAGTTCACACTT |
| Enterobacter sp. 638 | Ent638_1469 | -189 | 4 | ATGCCTGACGGAGTTCACACTT |
| Serratia proteamaculans 568 | Spro_1754 | -195 | 3.8 | TTTTTAGAGCTTTATCACATCA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1751 | -200 | 3.9 | TCTTATGACACAAATCACATCA |
| Edwardsiella tarda EIB202 | ETAE_1267 | -196 | 3.7 | TTTGGTGAGCATAATCACATCG |
|
Position: -162
Score: 4 Sequence: AAATTTGAAGCAGTTAACGCTA
Position: -133
Score: 4.6 Sequence: TTTTGTGATAAAGGTCGCGATT
Locus tag: EpC_22930
|
||||
| EpC_22930 | -162 | 4 | AAATTTGAAGCAGTTAACGCTA | |
| -133 | 4.6 | TTTTGTGATAAAGGTCGCGATT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: clpS | ||||
| Ortholog function: ATP-dependent Clp protease adaptor protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0881 | -164 | 4 | AAATTTGAAGCAGTTAACGCTA |
| Salmonella typhimurium LT2 | STM0944 | -164 | 4 | AAATTTGAAGCAGTTAACGCTA |
| -104 | 3.6 | AGATGTTAGTTATCTATCAATT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_02199 | -164 | 4 | AAATTTGAAGCAGTTAACGCTA |
| -135 | 4.2 | TAATGTGACAGATGTCGCGGAT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00914 | -167 | 4 | AAATTTGAAGCAGTTAACGCTA |
| -77 | 4.3 | ATTTGTGATGAGCATAACCTCT | ||
| Enterobacter sp. 638 | Ent638_1398 | -161 | 3.9 | ATTTTTGAAGCAGTTAACGCTA |
| -132 | 3.8 | GAATGTGACAGATATCGCGGAT | ||
| Erwinia amylovora ATCC 49946 | EAM_1320 | -161 | 4 | AAATTTGAAGCAGTTAACGCTA |
| -132 | 4.5 | TTTTGTGATAGAGGTCGCTATT | ||
| Serratia proteamaculans 568 | Spro_1673 | -176 | 3.6 | AAGTTTGAAGCAGGTAACGCTA |
| Edwardsiella tarda EIB202 | ETAE_2208 | -164 | 3.8 | AAGTTTGAGGCAGTTAACGCAA |
| -144 | 3.6 | AATTGTGCGGCAGTGCGCTTTT | ||
| Proteus mirabilis HI4320 | PMI0689 | -268 | 3.7 | TGTCTTTATTTACTTAACATTA |
| -148 | 4.1 | AACTTTGATGTAGCTAACGCTT | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1593 | -170 | 4.3 | AAGTTTGATATAGATAACGATA |
|
Position: -306
Score: 4.6 Sequence: AATCGCGACCTTTATCACAAAA
Position: -277
Score: 4 Sequence: TAGCGTTAACTGCTTCAAATTT
Locus tag: EpC_22940
|
||||
| EpC_22940 | -306 | 4.6 | AATCGCGACCTTTATCACAAAA | |
| -277 | 4 | TAGCGTTAACTGCTTCAAATTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cspD | ||||
| Ortholog function: cold shock-like protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0880 | -180 | 4 | TAGCGTTAACTGCTTCAAATTT |
| Salmonella typhimurium LT2 | STM0943 | -181 | 4 | TAGCGTTAACTGCTTCAAATTT |
| Citrobacter koseri ATCC BAA-895 | CKO_02200 | -210 | 3.9 | ATCCGCGACATCTGTCACATTA |
| -181 | 4 | TAGCGTTAACTGCTTCAAATTT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00913 | -270 | 4.2 | AGAGGTTATGCTCATCACAAAT |
| -180 | 4 | TAGCGTTAACTGCTTCAAATTT | ||
| Enterobacter sp. 638 | Ent638_1397 | -209 | 3.8 | ATCCGCGATATCTGTCACATTC |
| -180 | 3.9 | TAGCGTTAACTGCTTCAAAAAT | ||
| Serratia proteamaculans 568 | Spro_1672 | -205 | 4 | TAGCGTTACCTGCTTCAAACTT |
| -49 | 3.9 | TTCAGTTATTCATCTCACCTAA | ||
| Proteus mirabilis HI4320 | PMI0688 | -163 | 3.8 | AAGCGTTAGCTACATCAAAGTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1592 | -194 | 4.6 | TATCGTTATCTATATCAAACTT |
|
Position: -222
Score: 3.6 Sequence: AAAAGTGACTTCATTTAGAAAT
Position: -180
Score: 3.9 Sequence: AAATGTGATTCCGATCACCGGC
Locus tag: EpC_23180
|
||||
| EpC_23180 | -222 | 3.6 | AAAAGTGACTTCATTTAGAAAT | |
| -180 | 3.9 | AAATGTGATTCCGATCACCGGC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sdaC | ||||
| Ortholog function: Serine transporter | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2796 | -179 | 4.2 | ATTTGAGATCAAGATCACTGAT |
| Salmonella typhimurium LT2 | STM2970 | -176 | 4.2 | ATTTGAGATCGGGATCACTGAT |
| Citrobacter koseri ATCC BAA-895 | CKO_04152 | -176 | 4.1 | ATTTGGGATCGCGATCACTGAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03139 | -158 | 4.2 | ATTTGAGATCGCGATCACTGAT |
| Enterobacter sp. 638 | Ent638_3249 | -176 | 4.1 | ATTTGGGATCAGGATCACTGAT |
| Erwinia amylovora ATCC 49946 | EAM_1294 | -300 | 3.6 | ATTTGTTAAAAATCGCAAAAAA |
| -180 | 3.9 | AAATGTGATTCCGATCACCGGC | ||
| Yersinia pestis KIM | y2862 | -286 | 4.3 | AATTGAGATCACGATCACGGTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3158 | -195 | 3.7 | TTCTGTGATCGCCTCAATATTA |
| Proteus mirabilis HI4320 | PMI0672 | -283 | 4.3 | ATTTGAGATGGTGATCACGGTA |
|
Position: -136
Score: 4.2 Sequence: TTTTGTGAGCGAGCTTGCACAA
Locus tag: EpC_23560
|
||||
| EpC_23560 | -136 | 4.2 | TTTTGTGAGCGAGCTTGCACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hutH | ||||
| Ortholog function: histidine ammonia-lyase | ||||
| Salmonella typhimurium LT2 | STM0791 | -180 | 4.3 | AAACGTGATTGCTGACACAATA |
| Citrobacter koseri ATCC BAA-895 | CKO_02356 | -123 | 3.8 | AAGCGTGATTGCTGACGCAATA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00796 | -124 | 4 | AAACGTGATTGCTGACGCAATA |
| Enterobacter sp. 638 | Ent638_1264 | -120 | 4 | AAGCGTGATAGCTAACGCAATA |
| Erwinia amylovora ATCC 49946 | EAM_1254 | -121 | 3.8 | TTTTGTGACAAAGCTGGCACAA |
| Yersinia pestis KIM | y4037 | -261 | 4.9 | ATATGTGATTTGGTGCGCAAAT |
| Serratia proteamaculans 568 | Spro_0804 | -196 | 4.8 | TATTGTGATTTGACGCGCAAAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3192 | -203 | 4.7 | ATTTGTGATTATAAACACAAAA |
|
Position: -249
Score: 4.4 Sequence: AAATGTGATTATTGTCACTGTT
Locus tag: EpC_24420
|
||||
| EpC_24420 | -249 | 4.4 | AAATGTGATTATTGTCACTGTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sdhC | ||||
| Ortholog function: Succinate dehydrogenase cytochrome b-556 subunit | ||||
| Enterobacter sp. 638 | Ent638_1222 | -295 | 4.2 | TATCGTGACTGTGATCACTGTT |
| Erwinia amylovora ATCC 49946 | EAM_1168 | -249 | 4.4 | AAGTGTGATTTTTGTCACTGTT |
| -190 | 3.6 | TAATGAGATTGTGATCCACTTA | ||
| Yersinia pestis KIM | y3071 | -254 | 4.5 | AATCGTGATCCTAATCACTGTT |
| Serratia proteamaculans 568 | Spro_1263 | -253 | 4.3 | ATCCGTGATCTAAATCACTGTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1357 | -265 | 4.7 | ATTCGTGATCTAAATCACTGTT |
| Edwardsiella tarda EIB202 | ETAE_2588 | -261 | 3.7 | ATGCGTGACCGTTGTCACTGTT |
| Proteus mirabilis HI4320 | PMI0565 | -264 | 4.3 | AAAAGTGATCCCTCTCACTGTT |
|
Position: -217
Score: 4.3 Sequence: TCAGGTGACTTTAATCACATAT
Locus tag: EpC_24650
|
||||
| EpC_24650 | -217 | 4.3 | TCAGGTGACTTTAATCACATAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nagE | ||||
| Ortholog function: PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0679 | -176 | 4.4 | TTTGGTGACAAAACTCACAAAA |
| -142 | 4.2 | ATTTGCGATACGAATTAAATTT | ||
| Salmonella typhimurium LT2 | STM0685 | -177 | 4.8 | TTTAGTGATTATAATCACAAAA |
| Citrobacter koseri ATCC BAA-895 | CKO_02485 | -181 | 4.9 | TTTGGTGATTCAAATCACAAAA |
| -147 | 3.6 | ATTTGCGATACGAATTAATTTT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00700 | -153 | 4.7 | TTTGGTGATAATTATCACAAAA |
| -119 | 3.6 | ATTTGCGATACGAATTAATTTT | ||
| Erwinia amylovora ATCC 49946 | EAM_1148 | -161 | 4.8 | TAAGGTGACTTTAATCACATAT |
| Serratia proteamaculans 568 | Spro_1228 | -162 | 5.1 | TTTGGTGATGTAAATCACAAAA |
| -44 | 3.9 | AAATATGATAAAGCTCATTAAA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1318 | -200 | 3.7 | AAATTTGAACCCGTTTACTATT |
| -132 | 3.9 | TATCGCTACAGTGATCACAATT | ||
|
Position: -113
Score: 3.6 Sequence: AAAAACGATATTTATCACTTTT
Locus tag: EpC_24970
|
||||
| EpC_24970 | -113 | 3.6 | AAAAACGATATTTATCACTTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cspE | ||||
| Ortholog function: cold shock protein E | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0623 | -114 | 4 | TAACGCGACTTTTATCACTTTT |
| Salmonella typhimurium LT2 | STM0629 | -114 | 4.3 | TAACGCGATATTTATCACTTTT |
| Citrobacter koseri ATCC BAA-895 | CKO_02534 | -21 | 4.3 | TAACGCGATATTTATCACTTTT |
| Enterobacter sp. 638 | Ent638_1159 | -114 | 3.8 | TAACGCGACTTTTGTCACTTTT |
| Erwinia amylovora ATCC 49946 | EAM_1116 | -113 | 3.6 | AAAAACGATATTTATCACTTTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1294 | -113 | 3.9 | TTTAGCGACTTTTATCACTTTT |
|
Position: -90
Score: 4.6 Sequence: TAATGTGAGGTTTGTCACTAAT
Locus tag: EpC_25030
|
||||
| EpC_25030 | -90 | 4.6 | TAATGTGAGGTTTGTCACTAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ygbJ | ||||
| Ortholog function: D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2736 | -90 | 4.9 | TTATGTGAATCAGATCACCATA |
| Salmonella typhimurium LT2 | STM2918 | -90 | 4 | TTTTGTGAAACAACTCACCGCA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01605 | -91 | 5 | ATTCGTGATAACTCTCACATAT |
| Erwinia amylovora ATCC 49946 | EAM_1106 | -90 | 4.4 | TGATGTGAAGTTTATCACTAAT |
| Serratia proteamaculans 568 | Spro_1492 | -92 | 4.1 | AATTGTGACAACGATCGCTGAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4327 | -92 | 4.5 | TTATGTGATAAAAATCACCACA |
| Edwardsiella tarda EIB202 | ETAE_1922 | -93 | 3.9 | ATTTGTGAGGATAAACACGGTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2507 | -147 | 3.8 | ATAAATAATATAAATCAAATAA |
| -90 | 3.7 | GAATGTGATAACCATCGTGTAT | ||
|
Position: -234
Score: 4.7 Sequence: ATTAGTGACAAACCTCACATTA
Locus tag: EpC_25040
|
||||
| EpC_25040 | -234 | 4.7 | ATTAGTGACAAACCTCACATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ygbI | ||||
| Ortholog function: Hypothetical transcriptional regulator ygbI | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2735 | -166 | 3.7 | TTGTTTGATATTGTGAATATAA |
| -127 | 5.2 | TATGGTGATCTGATTCACATAA | ||
| Salmonella typhimurium LT2 | STM2919 | -128 | 4 | TGCGGTGAGTTGTTTCACAAAA |
| -87 | 3.6 | TTTTGTGAAGGCAATCCTCATA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01606 | -271 | 3.6 | TAATGTGATTTAATGATAGAAT |
| -230 | 4.7 | ATATGTGAGAGTTATCACGAAT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_pKPN4p07051 | -233 | 3.6 | TAATGTGATTTAATGATAGAAT |
| -192 | 4.7 | TTATGTGAGAGTTATCACGAAT | ||
| Erwinia amylovora ATCC 49946 | EAM_1104 | -238 | 4.5 | ATTAGTGATAAACTTCACATCA |
| Serratia proteamaculans 568 | Spro_1493 | -211 | 3.9 | ATCAGCGATCGTTGTCACAATT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4325 | -267 | 4.8 | TGTGGTGATTTTTATCACATAA |
| Edwardsiella tarda EIB202 | ETAE_1921 | -132 | 3.9 | AACCGTGTTTATCCTCACAAAT |
|
Position: -82
Score: 5.8 Sequence: AAATGTGATTTAAATCACATAT
Locus tag: EpC_27710
|
||||
| EpC_27710 | -82 | 5.8 | AAATGTGATTTAAATCACATAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: raiA | ||||
| Ortholog function: stationary phase translation inhibitor and ribosome stability factor | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2597 | -81 | 4.8 | TTATGAGATTTTCATCACACAT |
| Citrobacter koseri ATCC BAA-895 | CKO_03918 | -40 | 5.2 | TAATGTGATTTAAATCACGCTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02919 | -88 | 5.6 | AAATGTGATTTATATCACACAT |
| Enterobacter sp. 638 | Ent638_3076 | -81 | 5.4 | ATGTGTGATTTAGATCACACAT |
| Erwinia amylovora ATCC 49946 | EAM_2617 | -83 | 5.2 | AAATGTGATTTCAATCACGATT |
| Serratia proteamaculans 568 | Spro_0882 | -83 | 4.8 | ATACGTGATTTTCATCACGCAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3349 | -86 | 4 | AAAAGCGATCAATCTCACGCTT |
| Edwardsiella tarda EIB202 | ETAE_2834 | -82 | 3.8 | ATCCGTGATTTTCCTCTCACAC |
| Proteus mirabilis HI4320 | PMI0391 | -82 | 4.6 | AAAAGTGATCTTGATCATGTTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1266 | -87 | 5.1 | AATAGTGATTTAGATCACCTTT |
|
Position: -62
Score: 3.6 Sequence: TAATATGATTATTAACGTATTT
Locus tag: EpC_27750
|
||||
| EpC_27750 | -62 | 3.6 | TAATATGATTATTAACGTATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aroF | ||||
| Ortholog function: phospho-2-dehydro-3-deoxyheptonate aldolase | ||||
| Salmonella typhimurium LT2 | STM2670 | -71 | 3.9 | TTTTGTGGTATGGTTTAAACAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02923 | -159 | 3.8 | TATTGTTATACGCATCGCGCCA |
| Edwardsiella tarda EIB202 | ETAE_2837 | -117 | 3.8 | ATGTACGATATTGTTTACATAT |
| Proteus mirabilis HI4320 | PMI0387 | -214 | 4.5 | TTATTTTATCTTAGTCACATTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1262 | -262 | 3.6 | TGTTTTGATATTGATTTTATTT |
|
Position: -219
Score: 3.9 Sequence: TTTTGTGACGTAGATCCAAAGT
Locus tag: EpC_29670
|
||||
| EpC_29670 | -219 | 3.9 | TTTTGTGACGTAGATCCAAAGT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: epd | ||||
| Ortholog function: D-erythrose 4-phosphate dehydrogenase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2927 | -213 | 4.7 | AAGTGTGATGTGAGTCAGATAA |
| Salmonella typhimurium LT2 | STM3070 | -213 | 5 | AAATGTGATGCAGGTCAGATAA |
| Citrobacter koseri ATCC BAA-895 | CKO_04297 | -213 | 4.8 | AAGTGTGATGCAGGTCAGATAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03356 | -213 | 4.8 | AAATGTGATGTGAGTCATATAG |
| Enterobacter sp. 638 | Ent638_3340 | -215 | 4.5 | AAATGTGACGCAAGTCATATAG |
| Erwinia amylovora ATCC 49946 | EAM_2813 | -208 | 4.1 | TTTTGTGACGCAGATCGAAAGT |
| Yersinia pestis KIM | y3309 | -216 | 3.7 | AATTGTGCCCTTTTTCAGGGAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3913 | -194 | 4.1 | TTTTATGACGCAGGTCACTCTT |
| Edwardsiella tarda EIB202 | ETAE_2958 | -233 | 4.9 | AATTGTGATGCAATGCACGTTT |
| Proteus mirabilis HI4320 | PMI0241 | -253 | 4.4 | AAATGTTAACAAGAGCACATTT |
|
Position: -157
Score: 3.8 Sequence: TGATGTAATCTGTCGCACAGTC
Locus tag: EpC_29770
|
||||
| EpC_29770 | -157 | 3.8 | TGATGTAATCTGTCGCACAGTC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: galP | ||||
| Ortholog function: sugar transporter | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2943 | -156 | 3.6 | TATGATGATATAACTCAATTAT |
| -82 | 4.9 | TGATGTGATTTGCTTCACATCT | ||
| Salmonella typhimurium LT2 | STM3091 | -83 | 4.6 | CATTGTGATTAGCCTCACATCT |
| Citrobacter koseri ATCC BAA-895 | CKO_04318 | -83 | 5.3 | TAACGTGATTCGAATCACATAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03376 | -84 | 3.8 | AGCCGTGATTATAGTCACGTTT |
| Enterobacter sp. 638 | Ent638_3347 | -171 | 3.9 | TATTGGGATGCACATCAACTCT |
| -102 | 3.7 | TAGTGTAACCGATTACACCAAT | ||
| -84 | 5.3 | CAATGTGATTTATCTCACATAT | ||
| Erwinia amylovora ATCC 49946 | EAM_2827 | -152 | 4.1 | TCATGTGATCTGTCGCACAGTC |
| Serratia proteamaculans 568 | Spro_1160 | -276 | 4.5 | TGGTGTGATATCGGTTACATTT |
| -100 | 3.6 | TTGTGTAATCGTTTCCACTAAT | ||
| -82 | 4.6 | TAATGTGATCGCACTCACTTAC | ||
| Edwardsiella tarda EIB202 | ETAE_2966 | -275 | 3.7 | CAAAGTGAAAACGATTACATTT |
| -61 | 4.5 | TTATGTGATCATGCGCACTTTA | ||
|
Position: -274
Score: 3.7 Sequence: CAGTGAGATCTTTATCACAACG
Locus tag: EpC_31080
|
||||
| EpC_31080 | -274 | 3.7 | CAGTGAGATCTTTATCACAACG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cstA2 | ||||
| Ortholog function: Carbon starvation protein A paralog | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4354 | -231 | 5.7 | ATATGTGATATGAATCACATAT |
| Salmonella typhimurium LT2 | STM4532 | -229 | 5.4 | TATCGTGATCTCAATCACATAA |
| Citrobacter koseri ATCC BAA-895 | CKO_03443 | -228 | 5.2 | ATTAGTGATCTCAATCACATAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04776 | -231 | 5.2 | TATTGTGAGCTTAATCACACAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1187 | -57 | 3.7 | TATTTTTCTACAGCTAACAAAA |
| Proteus mirabilis HI4320 | PMI0142 | -279 | 3.6 | ATTTTTTATGTAATTAATAGTT |
| -234 | 5.2 | ATTTGTTATCTCGATCACAAAA | ||
|
Position: -98
Score: 3.9 Sequence: CTGCGTGATCTGCCGCGCAAAA
Locus tag: EpC_32730
|
||||
| EpC_32730 | -98 | 3.9 | CTGCGTGATCTGCCGCGCAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: acs | ||||
| Ortholog function: acetyl-coenzyme A synthetase | ||||
| Erwinia amylovora ATCC 49946 | EAM_0327 | -98 | 3.9 | CTGCGTGATCTGCCGCGCAAAA |
|
Position: -158
Score: 3.4 Sequence: CATCATGATGCAGATGAAATTT
Locus tag: EpC_33990
|
||||
| EpC_33990 | -158 | 3.4 | CATCATGATGCAGATGAAATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yhfA | ||||
| Ortholog function: hypothetical protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3356 | -187 | 4.2 | TAATGTGACGTCCTTTGCATAC |
| Salmonella typhimurium LT2 | STM3465 | -188 | 3.9 | TAATGTGATGTCCTCTGCATAC |
| Citrobacter koseri ATCC BAA-895 | CKO_04775 | -187 | 3.3 | GAATGTGATGTCCTCTGCATAC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03742 | -188 | 3.5 | TAATGTGAACTCCTCTGCATAC |
| Serratia proteamaculans 568 | Spro_4579 | -280 | 3.3 | GGTTTTGAGGCGTGTCATAAAT |
|
Position: -229
Score: 3.3 Sequence: AAATTTCATCTGCATCATGATG
Locus tag: EpC_34000
|
||||
| EpC_34000 | -229 | 3.3 | AAATTTCATCTGCATCATGATG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: crp | ||||
| Ortholog function: cyclic AMP receptor protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3357 | -154 | 3.3 | TACATTGATGTACTGCATGTAT |
| -136 | 3.3 | GTATGCAAAGGACGTCACATTA | ||
| Salmonella typhimurium LT2 | STM3466 | -159 | 3.1 | TACATTGACGTACTGCATGTAT |
| Citrobacter koseri ATCC BAA-895 | CKO_04777 | -160 | 3.1 | TACATTGACGTACTGCATGTAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03743 | -158 | 3.3 | TACATTGATGTACTGCATGTAT |
| Enterobacter sp. 638 | Ent638_3784 | -128 | 2.9 | AAACATTACAGGCTGCAAACAT |
| Yersinia pestis KIM | y3956 | -309 | 3 | AATTTAGACTACCCTTTCATTT |
| Serratia proteamaculans 568 | Spro_4580 | -121 | 3.5 | ATTTATGACACGCCTCAAAACC |
| Proteus mirabilis HI4320 | PMI2820 | -135 | 3.3 | TATTATAATCTATTCCTTATTA |
|
Position: -212
Score: 3.6 Sequence: AATATTGACATTTTTCAAAACA
Locus tag: EpC_34220
|
||||
| EpC_34220 | -212 | 3.6 | AATATTGACATTTTTCAAAACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nudE | ||||
| Ortholog function: ADP compounds hydrolase NudE (EC 3.6.1.-) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3397 | -53 | 3.7 | AAGCGTGTCCGATATCGCACAA |
| Citrobacter koseri ATCC BAA-895 | CKO_04820 | -54 | 4.1 | AACCGTGCTGTATATCGCACAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03768 | -54 | 4 | AAGCGTGTTGCGTATCGCACAA |
| Enterobacter sp. 638 | Ent638_3810 | -55 | 3.6 | AACCGTGCGTCATATCGCACAA |
| Yersinia pestis KIM | y3923 | -247 | 4.5 | CAATGTGATCAAGTTCTAATAT |
| Serratia proteamaculans 568 | Spro_4612 | -135 | 4.4 | CAATGTGATCAAGATCGGATTT |
| Edwardsiella tarda EIB202 | ETAE_3268 | -116 | 3.6 | AAATATGAGCATCTGCGCACAA |
|
Position: -54
Score: 3.9 Sequence: TAAGGTGTTTGTGCTCACCTTT
Locus tag: EpC_34390
|
||||
| EpC_34390 | -54 | 3.9 | TAAGGTGTTTGTGCTCACCTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: malP | ||||
| Ortholog function: maltodextrin phosphorylase | ||||
| Erwinia amylovora ATCC 49946 | EAM_3261 | -54 | 3.9 | TAAGGTGTTTGTGCTCACCTTT |
|
Position: -61
Score: 3.8 Sequence: TTAAGCGATAGCGCTCACCGAT
Locus tag: EpC_34400
|
||||
| EpC_34400 | -61 | 3.8 | TTAAGCGATAGCGCTCACCGAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glpR2 | ||||
| Ortholog function: DNA-binding transcriptional repressor | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3423 | -95 | 4.7 | TAGAGTGATATGTATAACATTA |
| Salmonella typhimurium LT2 | STM3523 | -104 | 4.7 | TAGAGTGATATGTATAACATTA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03789 | -107 | 4.3 | TGAAGTGATGGGTGTAACATAT |
| Enterobacter sp. 638 | Ent638_3832 | -257 | 3.8 | ATGTTCGATATCGCTCATAATA |
| -196 | 4.6 | TTGAGTGATAGAGATAACATAA | ||
| Erwinia amylovora ATCC 49946 | EAM_3262 | -134 | 3.9 | ATGCGTGATGCCGATAACGTCT |
| Proteus mirabilis HI4320 | PMI2929 | -32 | 3.8 | TAACATGATATTTTTAACTTTA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0195 | -102 | 3.6 | TAACGTATTACTGATAACAAAT |
|
Position: -134
Score: 3.9 Sequence: ACGCGTGATGCAGATAACATCT
Locus tag: EpC_34420
|
||||
| EpC_34420 | -134 | 3.9 | ACGCGTGATGCAGATAACATCT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glpE | ||||
| Ortholog function: thiosulfate sulfurtransferase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3425 | -95 | 4.7 | TAGAGTGATATGTATAACATTA |
| Salmonella typhimurium LT2 | STM3525 | -104 | 4.7 | TAGAGTGATATGTATAACATTA |
| Citrobacter koseri ATCC BAA-895 | CKO_04844 | -108 | 4.6 | TAGAGTGATACATATAACATTA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03791 | -107 | 4.3 | TGAAGTGATGGGTGTAACATAT |
| Enterobacter sp. 638 | Ent638_3834 | -257 | 3.8 | ATGTTCGATATCGCTCATAATA |
| -196 | 4.6 | TTGAGTGATAGAGATAACATAA | ||
| Erwinia amylovora ATCC 49946 | EAM_3264 | -134 | 3.9 | ATGCGTGATGCCGATAACGTCT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0197 | -102 | 3.6 | TAACGTATTACTGATAACAAAT |
|
Position: -126
Score: 3.8 Sequence: AGATGTTATCTGCATCACGCGT
Locus tag: EpC_34430
|
||||
| EpC_34430 | -126 | 3.8 | AGATGTTATCTGCATCACGCGT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glpD | ||||
| Ortholog function: glycerol-3-phosphate dehydrogenase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3426 | -116 | 4.4 | TAATGTTATACATATCACTCTA |
| Salmonella typhimurium LT2 | STM3526 | -116 | 4.4 | TAATGTTATACATATCACTCTA |
| Citrobacter koseri ATCC BAA-895 | CKO_04845 | -116 | 4.5 | TAATGTTATATGTATCACTCTA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03792 | -119 | 3.7 | ATATGTTACACCCATCACTTCA |
| -58 | 3.7 | TATAGTGAGCGATATCGAGCAT | ||
| Enterobacter sp. 638 | Ent638_3835 | -116 | 4.4 | TTATGTTATCTCTATCACTCAA |
| -55 | 4 | TATTATGAGCGATATCGAACAT | ||
| Erwinia amylovora ATCC 49946 | EAM_3265 | -124 | 4 | AGACGTTATCGGCATCACGCAT |
| Yersinia pestis KIM | y3891 | -129 | 4.4 | AAATGTTACCTCCATCACGCAT |
| Serratia proteamaculans 568 | Spro_4642 | -129 | 3.6 | AACTGTTACCTCTATCACGCCT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4141 | -144 | 4.3 | TAATGTGACAACTATCATCATA |
| -124 | 4.4 | TATTGTTAGCTTCATCACGCAT | ||
| Edwardsiella tarda EIB202 | ETAE_3312 | -124 | 4.3 | TTGTGTTATCCGCATCGCGTAA |
| Proteus mirabilis HI4320 | PMI2930 | -129 | 4.4 | AATTGTTATTTATATCACGCAG |
|
Position: -129
Score: 4.6 Sequence: TTTTTTGACAACCCTCACATTT
Locus tag: EpC_34640
|
||||
| EpC_34640 | -129 | 4.6 | TTTTTTGACAACCCTCACATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gntK | ||||
| Ortholog function: gluconate kinase 1 | ||||
| Erwinia amylovora ATCC 49946 | EAM_3275 | -129 | 4.6 | TTTTTTGACAGTCTTCACACTT |
|
Position: -200
Score: 3.8 Sequence: AAACGTTATGTTTCTTTCATTT
Locus tag: EpC_34780
|
||||
| EpC_34780 | -200 | 3.8 | AAACGTTATGTTTCTTTCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ugpB | ||||
| Ortholog function: Glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein (TC 3.A.1.1.3) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3453 | -182 | 3.6 | ATCCGTGCCCCATCTCCCATTT |
| Salmonella typhimurium LT2 | STM3557 | -184 | 3.5 | ATCCGTGCCGTAGCTCCCACTT |
| Citrobacter koseri ATCC BAA-895 | CKO_04874 | -185 | 3.3 | TATTTTTCTGTCATTCGCGCAT |
| -162 | 3.2 | TCATGTTACCTCGCGAGCATAA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03813 | -88 | 3.4 | TATTTTTCTGTAATTCGAACAT |
| Enterobacter sp. 638 | Ent638_3856 | -162 | 3.5 | AGTTATTATTCCCGCCACATTA |
| -58 | 3.2 | TCATGTTACCTCGCGAGCATAA | ||
| Erwinia amylovora ATCC 49946 | EAM_3285 | -171 | 3.9 | GTGTGTGATGCCGTTAACACAG |
| Yersinia pestis KIM | y0434 | -72 | 3.5 | AAAACTGATTTATTTCGCTCAT |
| -41 | 4.1 | TTTTTTGATGTGAGCCACACAG | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2429 | -145 | 3.5 | TATCGCGATACAGTTCATCACT |
| Edwardsiella tarda EIB202 | ETAE_3321 | -63 | 3.4 | CAATATGTTGTTTATCACTCAA |
|
Position: -135
Score: 4.2 Sequence: AAATATGACCTATTGAACATTA
Locus tag: EpC_35900
|
||||
| EpC_35900 | -135 | 4.2 | AAATATGACCTATTGAACATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yhjE | ||||
| Ortholog function: Inner membrane metabolite transport protein YhjE | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3523 | -155 | 4.5 | TTATGTGAAGCATTTCATAGAA |
| Salmonella typhimurium LT2 | STM3609 | -154 | 4.2 | TTATGTGAAGCATTTCATAGAC |
| Citrobacter koseri ATCC BAA-895 | CKO_04963 | -155 | 4 | TTGTGTGAAGCATTTCATAGAC |
| -94 | 3.7 | TTATTTGAGCGAAATCCCGCTT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03874 | -154 | 4.3 | TTGTGTGAAGCATTTCATAGAA |
| Enterobacter sp. 638 | Ent638_3920 | -155 | 4.2 | AACTGTGAAGCATTTCATAGAA |
| Erwinia amylovora ATCC 49946 | EAM_3376 | -134 | 3.6 | AAATATGCCGTATTGAACATTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0769 | -222 | 4.7 | AATTGTGTGCGATCTCACATAT |
|
Position: -134
Score: 4.4 Sequence: TGAAGTGATTCAGCTCATAAAA
Locus tag: EpC_35950
|
||||
| EpC_35950 | -134 | 4.4 | TGAAGTGATTCAGCTCATAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dctA | ||||
| Ortholog function: C4-dicarboxylate transport protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3528 | -143 | 4.1 | TTGTGCGAGCCAGCTCAAACTT |
| Salmonella typhimurium LT2 | STM3614 | -145 | 4.1 | TTGTGCGAGCCAGCTCAAACTT |
| Citrobacter koseri ATCC BAA-895 | CKO_04970 | -145 | 4 | TTGTGCGAGCCAGCTCAAAGTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03878 | -143 | 3.9 | TTGTGCGAGTCAGCTCAAAGAT |
| Erwinia amylovora ATCC 49946 | EAM_3380 | -134 | 4.4 | TGAAGTGATTCAGCTCATAAAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4362 | -157 | 3.8 | TGACGTGATTCAGCTCTTGTTT |
| Edwardsiella tarda EIB202 | ETAE_3379 | -155 | 3.6 | TTATGCGTTTCAGCTCATAGAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3205 | -176 | 4.9 | TTATGTGATCTATATCTTAAAA |
|
Position: -327
Score: 5.8 Sequence: TTTTGTGATCTAATTCACATTA
Position: -283
Score: 5.3 Sequence: TTATGTGACAAGGATCACATAA
Position: -210
Score: 4.8 Sequence: ATTTGTGATTAAAATCACTAAA
Locus tag: EpC_36330
|
||||
| EpC_36330 | -327 | 5.8 | TTTTGTGATCTAATTCACATTA | |
| -283 | 5.3 | TTATGTGACAAGGATCACATAA | ||
| -210 | 4.8 | ATTTGTGATTAAAATCACTAAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mtlA | ||||
| Ortholog function: PTS system, mannitol-specific IIC component (EC 2.7.1.69) / PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIA component (EC 2.7.1.69) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3599 | -206 | 4.5 | TTTTGTGATGAACGTCACGTCA |
| -162 | 5.4 | TTATGTGATTGATATCACACAA | ||
| -113 | 3.3 | TTCAGTGCCAGATTTCGCAGTA | ||
| Salmonella typhimurium LT2 | STM3685 | -207 | 4.8 | CTTTGTGATCAATATCACATCA |
| -163 | 5.4 | TTATGTGACGCAAATCACATAA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_05054 | -203 | 5.2 | TTTTGTGATCAATATCACATCA |
| -159 | 5 | TCATGTGATCCAAATCACACAA | ||
| -110 | 3.4 | TTCAGTGCCAGATTTCGCACTA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03942 | -208 | 4.9 | TTTTGTGATCATCATCACTAAA |
| -164 | 5.2 | TCATGTGATCCAAATCACATAA | ||
| -115 | 3.4 | TTCAGTGCCAGATTTCGCACTA | ||
| Enterobacter sp. 638 | Ent638_0136 | -224 | 3.4 | TATTTTTTTCATACTCTCATTT |
| -205 | 4.8 | TTTTGTGATGGCGATCACCTCA | ||
| -161 | 5.1 | TTGCGTGATGCAGATCACACAA | ||
| Erwinia amylovora ATCC 49946 | EAM_3416 | -229 | 3.3 | CATTGCGAATATCTTTACACTT |
| -210 | 3.9 | CTTCGTGACTCATGTCACTAAA | ||
| -166 | 4.8 | TTAAGTGACCCGCATCACACTT | ||
| -95 | 3.2 | CGTTTTGATCGTGATCCCTCAA | ||
| -34 | 3.5 | ACATGAGATTTGCATCATTAAT | ||
| Yersinia pestis KIM | y4087 | -223 | 4.6 | AGATGTGATCTTAATCAACAAA |
| -179 | 4.5 | TTGTGTGACTTTCGTCACGAAA | ||
| Serratia proteamaculans 568 | Spro_0072 | -195 | 5.2 | AAATGTGATGTATATCACTATA |
| -151 | 4.5 | GTTGGTGATCTGCATCACAAAA | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0087 | -230 | 5.1 | TTTTGTGAAGTAAATCACCTAT |
| -186 | 4.5 | TTGTGTGATTTTTGTCACGTTG | ||