Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of FadR regulog to Yersinia pestis biovar Antiqua str. UG05-0454

Reference regulog properties
Source regulog: FadR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: activator (repressor)
Biological process: Fatty acid degradation
Effector: Palmitoyl-CoA; Oleoyl-CoA
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Yersinia pestis biovar Antiqua str. UG05-0454
Orthologous TF(s) YpUG050454_0026
Regulated genes 9
Built upon 130 sites [see more]
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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

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Predicted regulatory interactions in Yersinia pestis biovar Antiqua str. UG05-0454
Locus tag Position Score Sequence
Position: -43
Score: 5
Sequence: ATCTGGTCATACCAGAT
Locus tag: YpUG050454_0430
YpUG050454_0430 -43 5 ATCTGGTCATACCAGAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadB
Ortholog function: fatty oxidation complex, alpha subunit FadB
Escherichia coli str. K-12 substr. MG1655 b3846 -42 5.1 ATCTGGTACGACCAGAT
Salmonella typhimurium LT2 STM3983 -42 5.1 ATCTGGTACGACCAGAT
Citrobacter koseri ATCC BAA-895 CKO_00188 -42 5.1 ATCTGGTATGACCAGAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04340 -43 5.1 ATCTGGTATGACCAGAT
Enterobacter sp. 638 Ent638_3949 -43 5.1 ATCTGGTATGACCAGAT
Erwinia amylovora ATCC 49946 EAM_0213 -44 5.1 ATCTGGTATGACCAGAT
Yersinia pestis KIM y0464 -43 5 ATCTGGTCATACCAGAT
Serratia proteamaculans 568 Spro_0261 -41 5 ATCTGGTCATACCAGAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0208 -43 5 ATCTGGTCATACCAGAT
Proteus mirabilis HI4320 PMI3550 -38 5.1 ATCTGGTCATACCAGTT
Photorhabdus luminescens subsp. laumondii TTO1 plu4402 -43 5 ATCTGGTCATACCAGAT
Position: -84
Score: 4.9
Sequence: ATCTCATCCGACCACTT
Locus tag: YpUG050454_0605
YpUG050454_0605 -84 4.9 ATCTCATCCGACCACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadH
Ortholog function: 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)
Escherichia coli str. K-12 substr. MG1655 b3081 -46 4.9 AACTCATCCGACCACAT
Salmonella typhimurium LT2 STM3219 -46 4.9 AACTCATCCGACCACAT
Citrobacter koseri ATCC BAA-895 CKO_04487 -46 4.9 AACTCATCCGACCACAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03510 -44 4.9 AACTCATCCGACCACAT
Enterobacter sp. 638 Ent638_3539 -44 4.9 AACTCATCCGACCACAT
Erwinia amylovora ATCC 49946 EAM_0507 -31 5 AACTCATCCGACCACTT
Yersinia pestis KIM y3589 -57 4.9 ATCTCATCCGACCACTT
Serratia proteamaculans 568 Spro_4309 -61 4.9 ATCTCATCCGACCACTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0655 -36 4.4 GACTCATCAGACCAGTT
Proteus mirabilis HI4320 PMI3702 -32 4.7 ATCTCATCTGACCAGTA
Photorhabdus luminescens subsp. laumondii TTO1 plu3990 -89 4.7 CACTCATCCGACCACTT
Position: -67
Score: 3.8
Sequence: TTGAGGTCCTACCAGTT
Locus tag: YpUG050454_1180
YpUG050454_1180 -67 3.8 TTGAGGTCCTACCAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadM
Ortholog function: Long-chain acyl-CoA thioesterase FadM (EC=3.1.2.-)
Escherichia coli str. K-12 substr. MG1655 b0443 -59 4.5 AAGAGGTCATACCAGTT
Salmonella typhimurium LT2 STM0454 -70 3.9 TAGAGGTCATACCAGTT
Citrobacter koseri ATCC BAA-895 CKO_02717 -59 4.4 ATGAGGTCATACCAGTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00405 -54 4.3 AAGTGGTGTGACCTCTT
Enterobacter sp. 638 Ent638_0910 -58 4.1 AAGAGGTCATACCAGTC
Yersinia pestis KIM y1033 -49 3.8 TTGAGGTCCTACCAGTT
Serratia proteamaculans 568 Spro_1101 -97 4.3 TACAGGTCTTACCAGTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1154 -44 4.4 ATCAGGTCGTACCAGTT
Position: -99
Score: 4.2
Sequence: CACTGGTCTGCTTTGTC
Locus tag: YpUG050454_1735
YpUG050454_1735 -99 4.2 CACTGGTCTGCTTTGTC
Supported by regulated orthologs from reference regulons