Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of UxuR regulog to Yersinia pestis biovar Antiqua str. UG05-0454

Reference regulog properties
Source regulog: UxuR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Glucuronate utilization
Effector: Glucuronate
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Yersinia pestis biovar Antiqua str. UG05-0454
Orthologous TF(s) YpUG050454_1992
Regulated genes 5
Built upon 44 sites [see more]
Predicted regulatory interactions in Yersinia pestis biovar Antiqua str. UG05-0454
Locus tag Position Score Sequence
Position: -105
Score: 4.5
Sequence: TAAGTGGTATAACAAATC
Locus tag: YpUG050454_0592
YpUG050454_0592 -105 4.5 TAAGTGGTATAACAAATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: exuR
Ortholog function: exu regulon transcriptional regulator
Escherichia coli str. K-12 substr. MG1655 b3094 -47 4.7 AAAGTGGTATAACAAATA
Yersinia pestis KIM y3602 -105 4.5 TAAGTGGTATAACAAATC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0643 -98 4.5 TAAGTGGTATAACAAATC
Edwardsiella tarda EIB202 ETAE_0434 -68 4.2 AAAGTGGTATAACAACTC
Position: -194
Score: 5.4
Sequence: ATATTGGTTCACCAAAAT
Locus tag: YpUG050454_2562
YpUG050454_2562 -194 5.4 ATATTGGTTCACCAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lfaR
Ortholog function: periplasmic binding protein/LacI transcriptional regulator
Yersinia pestis KIM y3231 -194 5.4 ATATTGGTTCACCAAAAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1966 -176 6 AAATTGGTTTACCAAATT
Position: -217
Score: 5.2
Sequence: ATTTTGGTGAACCAATAT
Locus tag: YpUG050454_2563
YpUG050454_2563 -217 5.2 ATTTTGGTGAACCAATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lfaT
Ortholog function: Putative MFS superfamily hexuronate transporter
Yersinia pestis KIM y3232 -217 5.2 ATTTTGGTGAACCAATAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1967 -162 5.9 AATTTGGTAAACCAATTT
Position: -91
Score: 4.2
Sequence: AAACTGGTCTAACAACTT
Locus tag: YpUG050454_1991
YpUG050454_1991 -91 4.2 AAACTGGTCTAACAACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yeiQ
Ortholog function: paralog of D-mannonate oxidoreductase
Escherichia coli str. K-12 substr. MG1655 b2172 -176 4.1 AATTTATTATACCAATCT
Yersinia pestis KIM y2903 -363 4.3 AtgTTGtTatACCgATTT
-250 3.9 tAtTgGacTtACCAATTT
-92 4.2 AAAcTGGTctAaCAAcTT
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