Propagation of NtrC regulog to Klebsiella pneumoniae subsp. pneumoniae MGH 78578
| Source regulog: | NtrC - Enterobacteriales |
| Regulator type: | Transcription factor |
| Regulator family: | Fis |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrogen assimilation |
| Effector: | Phosphorylated NtrB, signal histidine kinase |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Klebsiella pneumoniae subsp. pneumoniae MGH 78578 |
| Orthologous TF(s) | KPN_04176 |
| Regulated genes | 12 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -181
Score: 5.3 Sequence: TGCACCGTTGTGGTGCA
Locus tag: KPN_00413
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| KPN_00413 | -181 | 5.3 | TGCACCGTTGTGGTGCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glnK | ||||
| Ortholog function: nitrogen regulatory protein P-II | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0450 | -137 | 5.2 | TGCACTGTCATAGTGCG |
| Salmonella typhimurium LT2 | STM0462 | -177 | 5.2 | TGCACCGTCGTGGTGCG |
| Citrobacter koseri ATCC BAA-895 | CKO_02708 | -147 | 5.3 | TGCACCGTTATAGTGCG |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00413 | -181 | 5.3 | TGCACCGTTGTGGTGCA |
| Enterobacter sp. 638 | Ent638_0918 | -160 | 5.3 | TGCACTGTCATGGTGCG |
| Erwinia amylovora ATCC 49946 | EAM_1004 | -209 | 4.7 | TGCATCATTTTAGTGCG |
| -189 | 5.1 | TGAACTATTTTGGTGCA | ||
| Yersinia pestis KIM | y1041 | -191 | 5.8 | TGCACCAACTTGGTGCG |
| Serratia proteamaculans 568 | Spro_1109 | -192 | 5.3 | CGCACCAAAGTAGTGCG |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1160 | -244 | 5.8 | TGCACCAACTTAGTGCA |
| Edwardsiella tarda EIB202 | ETAE_1003 | -152 | 5.2 | TGCACCGTTTTGGTGCT |
| Proteus mirabilis HI4320 | PMI0126 | -114 | 4.7 | TGCACTAAGTTAGTGAG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3857 | -173 | 5.5 | TGCACTAATTCGGTGCA |
|
Position: -171
Score: 4.6 Sequence: CGCGCTATTTTGGTGCA
Locus tag: KPN_00681
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| KPN_00681 | -171 | 4.6 | CGCGCTATTTTGGTGCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gltI | ||||
| Ortholog function: Glutamate-aspartate ABC transporter, substrate-binding component | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00681 | -171 | 4.6 | CGCGCTATTTTGGTGCA |
|
Position: -159
Score: 5 Sequence: CGCCCCACCATGGTGCA
Locus tag: KPN_00840
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| KPN_00840 | -159 | 5 | CGCCCCACCATGGTGCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glnH | ||||
| Ortholog function: Glutamine ABC transporter, substrate-binding component | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0811 | -173 | 4.9 | CGCACCAGATTGGTGCC |
| -160 | 5.5 | TGCCCCAGAATGGTGCA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_02311 | -172 | 5.1 | TGCACTAAATCAGTGCC |
| -159 | 5.6 | TGCCCCAAAACGGTGCA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00840 | -172 | 4.2 | CGCACCAAAATGACGCC |
| -159 | 5 | CGCCCCACCATGGTGCA | ||
|
Position: -39
Score: 5.2 Sequence: AGCACCAGGATGGTGCA
Locus tag: KPN_00886
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| KPN_00886 | -39 | 5.2 | AGCACCAGGATGGTGCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: potG | ||||
| Ortholog function: Putrescine ABC transporter, ATP-binding component | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0855 | -47 | 5.4 | CGCACCATTATGGTGCG |
| Citrobacter koseri ATCC BAA-895 | CKO_02252 | -53 | 4.6 | CGCACTTTTATGGTGCG |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00886 | -39 | 5.2 | AGCACCAGGATGGTGCA |
| Enterobacter sp. 638 | Ent638_1369 | -53 | 4.8 | CGCACCGAAAGGGTGCG |
|
Position: -223
Score: 4.1 Sequence: TGCACCCTGATTGCGCA
Position: -189
Score: 3.8 Sequence: TGCACTGATTTTGACCA
Locus tag: KPN_01038
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| KPN_01038 | -223 | 4.1 | TGCACCCTGATTGCGCA | |
| -189 | 3.8 | TGCACTGATTTTGACCA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rutA | ||||
| Ortholog function: Pyrimidine oxygenase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1012 | -168 | 3.9 | TGCACTCTCATCGCGCA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01038 | -223 | 4.1 | TGCACCCTGATTGCGCA |
| -189 | 3.8 | TGCACTGATTTTGACCA | ||
| Enterobacter sp. 638 | Ent638_1525 | -227 | 4.1 | TGCACCGCCATCGCGCA |
| Serratia proteamaculans 568 | Spro_1823 | -230 | 3.9 | TGCACCTTTAATGAGCA |
|
Position: -305
Score: 4.1 Sequence: CGCGCCAAAAAAGGGCA
Locus tag: KPN_01221
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| KPN_01221 | -305 | 4.1 | CGCGCCAAAAAAGGGCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: astC | ||||
| Ortholog function: Succinylornithine transaminase (EC 2.6.1.81) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1748 | -323 | 4 | TGCCCGCTTTTGGTGCG |
| -303 | 3.9 | TGCGTCAGAATGGCGCA | ||
| Salmonella typhimurium LT2 | STM1303 | -334 | 3.2 | AGCGCGAAAATGGCACG |
| -304 | 4.1 | TGCGCCAGAACGGGGCG | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01221 | -305 | 4.1 | CGCGCCAAAAAAGGGCA |
| Enterobacter sp. 638 | Ent638_1696 | -324 | 3.9 | TGCACCATTTCGACGCG |
| -304 | 3.9 | TGCCCTCAAACAGGGCG | ||
|
Position: -193
Score: 5.1 Sequence: TGCATTATTATGGTGCA
Locus tag: KPN_01766
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| KPN_01766 | -193 | 5.1 | TGCATTATTATGGTGCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: EAM_0872 | ||||
| Ortholog function: Predicted ABC transporter, substrate-binding component | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01766 | -211 | 3.9 | GGCGCCAGCGTGGTGCT |
| -193 | 5.1 | TGCATTATTATGGTGCA | ||
| Erwinia amylovora ATCC 49946 | EAM_0872 | -247 | 3.7 | GGCGCCAGTCTGGTGCT |
| -229 | 4.3 | TGCCCTATTTCGGGGCA | ||
| Yersinia pestis KIM | y0932 | -205 | 5.5 | TGCACCTAAATGGTGCG |
| Serratia proteamaculans 568 | Spro_0932 | -214 | 4.5 | AGCGCCATTTTGGTGCT |
| -195 | 4.5 | CGCACTTTGATGGTGCG | ||
|
Position: -206
Score: 5 Sequence: TGCACCGTTGTAGTGCG
Locus tag: KPN_02437
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| KPN_02437 | -206 | 5 | TGCACCGTTGTAGTGCG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nac | ||||
| Ortholog function: Nitrogen assimilation transcriptional regulator, LysR family | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1988 | -205 | 5.1 | TGAACCATCGTGGTGCA |
| Citrobacter koseri ATCC BAA-895 | CKO_00955 | -206 | 4.8 | TGCGCCATTCTGGTGCA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02437 | -206 | 5 | TGCACCGTTGTAGTGCG |
| Enterobacter sp. 638 | Ent638_2564 | -206 | 4.8 | TGCACGATTCTGGTGCA |
| Erwinia amylovora ATCC 49946 | EAM_2112 | -228 | 4.3 | TGCACCATTAACGAGCA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2888 | -197 | 4.5 | TGCTTTAAGATGGTGCA |
|
Position: -215
Score: 5.3 Sequence: TGCCCCAAAAGGGTGCA
Locus tag: KPN_02699
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| KPN_02699 | -215 | 5.3 | TGCCCCAAAAGGGTGCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hisJ | ||||
| Ortholog function: Histidine ABC transporter, substrate-binding component | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2309 | -162 | 5.5 | TGCACTATCGTGGTGCA |
| Salmonella typhimurium LT2 | STM2354 | -211 | 4.4 | GGAACTATCACGGTGCA |
| -182 | 5.1 | TGCACCTTTTTGGTGCA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00478 | -212 | 4.3 | TTAACCATCACGGTGCG |
| -183 | 5.8 | TGCACCATCATGGTGCG | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02699 | -215 | 5.3 | TGCCCCAAAAGGGTGCA |
| -185 | 4 | TGGATCATTTCAGTGCA | ||
| Enterobacter sp. 638 | Ent638_2858 | -212 | 4.1 | TTCCCTGTCACGGTGCG |
| -182 | 5.2 | TGACCCAATATGGTGCA | ||
| Yersinia pestis KIM | y1607 | -123 | 4.8 | AGCACTGAAATGGGGCA |
| Serratia proteamaculans 568 | Spro_3326 | -265 | 4.4 | CGCACTGAATTAGGGCG |
| -243 | 4.3 | TGCACCATAATGATCCC | ||
|
Position: -39
Score: 6 Sequence: TGCACTAAATTGGTGCA
Locus tag: KPN_04177
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| KPN_04177 | -39 | 6 | TGCACTAAATTGGTGCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ntrB | ||||
| Ortholog function: Nitrogen regulation protein NR(II) (EC 2.7.3.-) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3869 | -38 | 6.1 | TGCACTAAAATGGTGCA |
| Salmonella typhimurium LT2 | STM4006 | -39 | 6.1 | TGCACTAAAATGGTGCA |
| Citrobacter koseri ATCC BAA-895 | CKO_03143 | -40 | 6 | TGCACTAAATTGGTGCA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04177 | -39 | 6 | TGCACTAAATTGGTGCA |
| Enterobacter sp. 638 | Ent638_4097 | -38 | 5.8 | TGCACTAAATTAGTGCA |
| Erwinia amylovora ATCC 49946 | EAM_0031 | -40 | 5.7 | TGCACTAAGTTGGTGCA |
| Yersinia pestis KIM | y3805 | -29 | 5.3 | TGCACCGAAACTGTGCA |
| Serratia proteamaculans 568 | Spro_4882 | -29 | 5.8 | TGCACTAAAAAGGTGCA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0028 | -29 | 5.2 | TGCACCATGCTGGTGCG |
| Edwardsiella tarda EIB202 | ETAE_3494 | -28 | 6.1 | TGCACCAAAATAGTGCA |
| Proteus mirabilis HI4320 | PMI2883 | -32 | 6.1 | TGCACTAAAATGGTGCA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0236 | -26 | 5.7 | TGCACCAAAAAAGTGCA |
|
Position: -251
Score: 6 Sequence: TGCACCAAAATGGTGCT
Position: -219
Score: 5.2 Sequence: AGCACTATTTTGGTGCA
Locus tag: KPN_04178
|
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| KPN_04178 | -251 | 6 | TGCACCAAAATGGTGCT | |
| -219 | 5.2 | AGCACTATTTTGGTGCA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glnA | ||||
| Ortholog function: Glutamine synthetase type I (EC 6.3.1.2) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3870 | -221 | 5.9 | TGCACCAACATGGTGCT |
| -189 | 5.4 | AGCACTATATTGGTGCA | ||
| Salmonella typhimurium LT2 | STM4007 | -224 | 5.5 | TGCACCAATGTGGTGCT |
| -192 | 5.2 | AGCACTATTTTGGTGCA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03140 | -202 | 5.9 | TGCACCAACATGGTGCT |
| -170 | 5.4 | AGCACTATATTGGTGCA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04178 | -251 | 6 | TGCACCAAAATGGTGCT |
| -219 | 5.2 | AGCACTATTTTGGTGCA | ||
| Enterobacter sp. 638 | Ent638_4096 | -237 | 5.3 | CGCACCATTATGGTGCT |
| -205 | 5.6 | AGCACTATAATGGTGCA | ||
| Erwinia amylovora ATCC 49946 | EAM_0032 | -288 | 5.1 | TGCACCAAAATGGTGAC |
| -256 | 5.3 | AGCACCAGAATGGTGCG | ||
| Yersinia pestis KIM | y3804 | -384 | 5.6 | TGCACCAAAATAGTGCC |
| -353 | 5.5 | GGCACCAAAATAGTGCA | ||
| Serratia proteamaculans 568 | Spro_4881 | -220 | 5.2 | TGCACCATTACAGTGCT |
| -188 | 5.2 | TGCACCATTTAAGTGCA | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0029 | -218 | 5.3 | TGCACCAAACAAGTGCA |
| -186 | 5.4 | AGCACCAACTTGGTGCT | ||
| Edwardsiella tarda EIB202 | ETAE_3493 | -220 | 5.5 | TGCACCAAGATTGTGCG |
| -188 | 5.2 | TGCACCATTATGGAGCA | ||
| Proteus mirabilis HI4320 | PMI2882 | -223 | 5.9 | TGCACCAAAATTGTGCA |
| -189 | 5.8 | TGCACCAAATTTGTGCA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0237 | -303 | 5.1 | CGCACTAATATTGTGCG |
| -272 | 5.9 | TGCACCAATATAGTGCA | ||