Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of NtrC regulog to Klebsiella pneumoniae NTUH-K2044

Reference regulog properties
Source regulog: NtrC - Enterobacteriales
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Klebsiella pneumoniae NTUH-K2044
Orthologous TF(s) KP1_0028
Regulated genes 12
Built upon 130 sites [see more]
Predicted regulatory interactions in Klebsiella pneumoniae NTUH-K2044
Locus tag Position Score Sequence
Position: -39
Score: 6
Sequence: TGCACTAAATTGGTGCA
Locus tag: KP1_0029
KP1_0029 -39 6 TGCACTAAATTGGTGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ntrB
Ortholog function: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Escherichia coli str. K-12 substr. MG1655 b3869 -38 6.1 TGCACTAAAATGGTGCA
Salmonella typhimurium LT2 STM4006 -39 6.1 TGCACTAAAATGGTGCA
Citrobacter koseri ATCC BAA-895 CKO_03143 -40 6 TGCACTAAATTGGTGCA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04177 -39 6 TGCACTAAATTGGTGCA
Enterobacter sp. 638 Ent638_4097 -38 5.8 TGCACTAAATTAGTGCA
Erwinia amylovora ATCC 49946 EAM_0031 -40 5.7 TGCACTAAGTTGGTGCA
Yersinia pestis KIM y3805 -29 5.3 TGCACCGAAACTGTGCA
Serratia proteamaculans 568 Spro_4882 -29 5.8 TGCACTAAAAAGGTGCA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0028 -29 5.2 TGCACCATGCTGGTGCG
Edwardsiella tarda EIB202 ETAE_3494 -28 6.1 TGCACCAAAATAGTGCA
Proteus mirabilis HI4320 PMI2883 -32 6.1 TGCACTAAAATGGTGCA
Photorhabdus luminescens subsp. laumondii TTO1 plu0236 -26 5.7 TGCACCAAAAAAGTGCA
Position: -227
Score: 6
Sequence: TGCACCAAAATGGTGCT
Position: -195
Score: 5.2
Sequence: AGCACTATTTTGGTGCA
Locus tag: KP1_0030
KP1_0030 -227 6 TGCACCAAAATGGTGCT
-195 5.2 AGCACTATTTTGGTGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnA
Ortholog function: Glutamine synthetase type I (EC 6.3.1.2)
Escherichia coli str. K-12 substr. MG1655 b3870 -221 5.9 TGCACCAACATGGTGCT
-189 5.4 AGCACTATATTGGTGCA
Salmonella typhimurium LT2 STM4007 -224 5.5 TGCACCAATGTGGTGCT
-192 5.2 AGCACTATTTTGGTGCA
Citrobacter koseri ATCC BAA-895 CKO_03140 -202 5.9 TGCACCAACATGGTGCT
-170 5.4 AGCACTATATTGGTGCA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04178 -251 6 TGCACCAAAATGGTGCT
-219 5.2 AGCACTATTTTGGTGCA
Enterobacter sp. 638 Ent638_4096 -237 5.3 CGCACCATTATGGTGCT
-205 5.6 AGCACTATAATGGTGCA
Erwinia amylovora ATCC 49946 EAM_0032 -288 5.1 TGCACCAAAATGGTGAC
-256 5.3 AGCACCAGAATGGTGCG
Yersinia pestis KIM y3804 -384 5.6 TGCACCAAAATAGTGCC
-353 5.5 GGCACCAAAATAGTGCA
Serratia proteamaculans 568 Spro_4881 -220 5.2 TGCACCATTACAGTGCT
-188 5.2 TGCACCATTTAAGTGCA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0029 -218 5.3 TGCACCAAACAAGTGCA
-186 5.4 AGCACCAACTTGGTGCT
Edwardsiella tarda EIB202 ETAE_3493 -220 5.5 TGCACCAAGATTGTGCG
-188 5.2 TGCACCATTATGGAGCA
Proteus mirabilis HI4320 PMI2882 -223 5.9 TGCACCAAAATTGTGCA
-189 5.8 TGCACCAAATTTGTGCA
Photorhabdus luminescens subsp. laumondii TTO1 plu0237 -303 5.1 CGCACTAATATTGTGCG
-272 5.9 TGCACCAATATAGTGCA
Position: -181
Score: 5.3
Sequence: TGCACCGTTGTGGTGCA
Locus tag: KP1_1285
KP1_1285 -181 5.3 TGCACCGTTGTGGTGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnK
Ortholog function: nitrogen regulatory protein P-II
Escherichia coli str. K-12 substr. MG1655 b0450 -137 5.2 TGCACTGTCATAGTGCG
Salmonella typhimurium LT2 STM0462 -177 5.2 TGCACCGTCGTGGTGCG
Citrobacter koseri ATCC BAA-895 CKO_02708 -147 5.3 TGCACCGTTATAGTGCG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00413 -181 5.3 TGCACCGTTGTGGTGCA
Enterobacter sp. 638 Ent638_0918 -160 5.3 TGCACTGTCATGGTGCG
Erwinia amylovora ATCC 49946 EAM_1004 -209 4.7 TGCATCATTTTAGTGCG
-189 5.1 TGAACTATTTTGGTGCA
Yersinia pestis KIM y1041 -191 5.8 TGCACCAACTTGGTGCG
Serratia proteamaculans 568 Spro_1109 -192 5.3 CGCACCAAAGTAGTGCG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1160 -244 5.8 TGCACCAACTTAGTGCA
Edwardsiella tarda EIB202 ETAE_1003 -152 5.2 TGCACCGTTTTGGTGCT
Proteus mirabilis HI4320 PMI0126 -114 4.7 TGCACTAAGTTAGTGAG
Photorhabdus luminescens subsp. laumondii TTO1 plu3857 -173 5.5 TGCACTAATTCGGTGCA
Position: -141
Score: 4.6
Sequence: CGCGCTATTTTGGTGCA
Locus tag: KP1_1638
KP1_1638 -141 4.6 CGCGCTATTTTGGTGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltI
Ortholog function: Glutamate-aspartate ABC transporter, substrate-binding component
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00681 -171 4.6 CGCGCTATTTTGGTGCA
Position: -159
Score: 5.3
Sequence: CGCCCCATCATGGTGCA
Locus tag: KP1_1797
KP1_1797 -159 5.3 CGCCCCATCATGGTGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnH
Ortholog function: Glutamine ABC transporter, substrate-binding component
Escherichia coli str. K-12 substr. MG1655 b0811 -173 4.9 CGCACCAGATTGGTGCC
-160 5.5 TGCCCCAGAATGGTGCA
Citrobacter koseri ATCC BAA-895 CKO_02311 -172 5.1 TGCACTAAATCAGTGCC
-159 5.6 TGCCCCAAAACGGTGCA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00840 -172 4.2 CGCACCAAAATGACGCC
-159 5 CGCCCCACCATGGTGCA
Position: -39
Score: 5.2
Sequence: AGCACCAGGATGGTGCA
Locus tag: KP1_1849
KP1_1849 -39 5.2 AGCACCAGGATGGTGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: potG
Ortholog function: Putrescine ABC transporter, ATP-binding component
Escherichia coli str. K-12 substr. MG1655 b0855 -47 5.4 CGCACCATTATGGTGCG
Citrobacter koseri ATCC BAA-895 CKO_02252 -53 4.6 CGCACTTTTATGGTGCG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00886 -39 5.2 AGCACCAGGATGGTGCA
Enterobacter sp. 638 Ent638_1369 -53 4.8 CGCACCGAAAGGGTGCG
Position: -223
Score: 4.1
Sequence: TGCACCCTGATTGCGCA
Position: -189
Score: 3.8
Sequence: TGCACTGATTTTGACCA
Locus tag: KP1_2027
KP1_2027 -223 4.1 TGCACCCTGATTGCGCA
-189 3.8 TGCACTGATTTTGACCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rutA
Ortholog function: Pyrimidine oxygenase
Escherichia coli str. K-12 substr. MG1655 b1012 -168 3.9 TGCACTCTCATCGCGCA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01038 -223 4.1 TGCACCCTGATTGCGCA
-189 3.8 TGCACTGATTTTGACCA
Enterobacter sp. 638 Ent638_1525 -227 4.1 TGCACCGCCATCGCGCA
Serratia proteamaculans 568 Spro_1823 -230 3.9 TGCACCTTTAATGAGCA
Position: -305
Score: 4.1
Sequence: CGCGCCAAAAAAGGGCA
Locus tag: KP1_2251
KP1_2251 -305 4.1 CGCGCCAAAAAAGGGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: astC
Ortholog function: Succinylornithine transaminase (EC 2.6.1.81)
Escherichia coli str. K-12 substr. MG1655 b1748 -323 4 TGCCCGCTTTTGGTGCG
-303 3.9 TGCGTCAGAATGGCGCA
Salmonella typhimurium LT2 STM1303 -334 3.2 AGCGCGAAAATGGCACG
-304 4.1 TGCGCCAGAACGGGGCG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01221 -305 4.1 CGCGCCAAAAAAGGGCA
Enterobacter sp. 638 Ent638_1696 -324 3.9 TGCACCATTTCGACGCG
-304 3.9 TGCCCTCAAACAGGGCG
Position: -193
Score: 5.1
Sequence: TGCATTATTATGGTGCA
Locus tag: KP1_2814
KP1_2814 -193 5.1 TGCATTATTATGGTGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: EAM_0872
Ortholog function: Predicted ABC transporter, substrate-binding component
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01766 -211 3.9 GGCGCCAGCGTGGTGCT
-193 5.1 TGCATTATTATGGTGCA
Erwinia amylovora ATCC 49946 EAM_0872 -247 3.7 GGCGCCAGTCTGGTGCT
-229 4.3 TGCCCTATTTCGGGGCA
Yersinia pestis KIM y0932 -205 5.5 TGCACCTAAATGGTGCG
Serratia proteamaculans 568 Spro_0932 -214 4.5 AGCGCCATTTTGGTGCT
-195 4.5 CGCACTTTGATGGTGCG
Position: -125
Score: 5
Sequence: TGCACCGTTGTAGTGCG
Locus tag: KP1_3570
KP1_3570 -125 5 TGCACCGTTGTAGTGCG
Supported by regulated orthologs from reference regulons
Ortholog gene name: nac
Ortholog function: Nitrogen assimilation transcriptional regulator, LysR family
Escherichia coli str. K-12 substr. MG1655 b1988 -205 5.1 TGAACCATCGTGGTGCA
Citrobacter koseri ATCC BAA-895 CKO_00955 -206 4.8 TGCGCCATTCTGGTGCA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02437 -206 5 TGCACCGTTGTAGTGCG
Enterobacter sp. 638 Ent638_2564 -206 4.8 TGCACGATTCTGGTGCA
Erwinia amylovora ATCC 49946 EAM_2112 -228 4.3 TGCACCATTAACGAGCA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2888 -197 4.5 TGCTTTAAGATGGTGCA
Position: -215
Score: 5.3
Sequence: TGCCCCAAAAGGGTGCA
Locus tag: KP1_3945
KP1_3945 -215 5.3 TGCCCCAAAAGGGTGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hisJ
Ortholog function: Histidine ABC transporter, substrate-binding component
Escherichia coli str. K-12 substr. MG1655 b2309 -162 5.5 TGCACTATCGTGGTGCA
Salmonella typhimurium LT2 STM2354 -211 4.4 GGAACTATCACGGTGCA
-182 5.1 TGCACCTTTTTGGTGCA
Citrobacter koseri ATCC BAA-895 CKO_00478 -212 4.3 TTAACCATCACGGTGCG
-183 5.8 TGCACCATCATGGTGCG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02699 -215 5.3 TGCCCCAAAAGGGTGCA
-185 4 TGGATCATTTCAGTGCA
Enterobacter sp. 638 Ent638_2858 -212 4.1 TTCCCTGTCACGGTGCG
-182 5.2 TGACCCAATATGGTGCA
Yersinia pestis KIM y1607 -123 4.8 AGCACTGAAATGGGGCA
Serratia proteamaculans 568 Spro_3326 -265 4.4 CGCACTGAATTAGGGCG
-243 4.3 TGCACCATAATGATCCC
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