Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of AraC regulog to Yersinia bercovieri ATCC 43970

Reference regulog properties
Source regulog: AraC - Enterobacterales
Regulator type: Transcription factor
Regulator family: AraC
Regulation mode: activator (repressor)
Biological process: Arabinose utilization
Effector: Arabinose
Phylum: Proteobacteria
Propagated regulon:
Target genome Yersinia bercovieri ATCC 43970
Orthologous TF(s) YberA_01002783
Regulated genes 1
Built upon 56 sites [see more]
Predicted regulatory interactions in Yersinia bercovieri ATCC 43970
Locus tag Position Score Sequence
Position: -206
Score: 7.3
Sequence: CAGTTTGATTATCCATA-(4)-CAGCAAATTTAACCTCT
Position: -131
Score: 7.2
Sequence: AAGCAGAAAAGTACATA-(4)-CAGCTATCTACTCCTCA
Locus tag: YberA_01002787
YberA_01002787 -206 7.3 CAGTTTGATTATCCATA-(4)-CAGCAAATTTAACCTCT
-131 7.2 AAGCAGAAAAGTACATA-(4)-CAGCTATCTACTCCTCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: araB
Ortholog function: Ribulokinase (EC 2.7.1.16)
Erwinia amylovora ATCC 49946 EAM_1697 -174 8.3 CAGCTGATTTATCCATA-(4)-CAGCAAATTTAACCTTT
-99 6.3 CGACAGAAAAATACATA-(4)-TAGCCTGCTCAACCTAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2274 -176 7.1 TGACAGGTTTGTGCATA-(4)-TAGCAAATTTAACCAAT
-101 6.4 CGACAGAAAAATACATA-(4)-TAGCTAACCACTCCTAA
Serratia proteamaculans 568 Spro_2244 -175 7.5 CAGCAGATATGTGCATA-(4)-TAGCGAATTCCGCCAAG
-100 7.1 AAGCAGAAAAGTGCATA-(4)-CAGCTAACGGCTCCTCA
Yersinia pestis KIM y2095 -189 7.8 CAGTTTATTTATCCATA-(4)-CAGCAAATTTAACCTCG
-114 7.5 AAGCAGAAAAGTGCATA-(4)-CAGCTATTGGCTCCTCA
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