Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of SdaR regulog to Yersinia bercovieri ATCC 43970

Reference regulog properties
Source regulog: SdaR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: SdaR
Regulation mode: activator
Biological process: Glucarate utilization; Galactarate utilization
Effector: Glycerate
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Yersinia bercovieri ATCC 43970
Orthologous TF(s) YberA_01001964
Regulated genes 3
Built upon 31 sites [see more]
Predicted regulatory interactions in Yersinia bercovieri ATCC 43970
Locus tag Position Score Sequence
Position: -241
Score: 4.4
Sequence: TATTGTGCATCTGCCTATGA
Locus tag: YberA_01001961
YberA_01001961 -241 4.4 TATTGTGCATCTGCCTATGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: garL
Ortholog function: 2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20)
Escherichia coli str. K-12 substr. MG1655 b3126 -186 6 TTATGTGCATATGCTCAAAA
-144 4.5 AAATTAGCATTTGCACAATG
Salmonella typhimurium LT2 STM3249 -316 5.1 TCATGGGCGTATGCTCAAAA
-273 4.8 TAATGAGCGTTTGCACAATG
Citrobacter koseri ATCC BAA-895 CKO_04523 -203 5.6 CGTTGTGCAAATGCTCAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03538 -206 4.7 CTTATGGCATAAGCACAATT
Enterobacter sp. 638 Ent638_3568 -208 5.4 GGTTGTGCATATGCTCAAAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3574 -358 4.1 TGCTGGGCTATTGCCCAATG
Position: -129
Score: 4.4
Sequence: AGTTGGGCATTTGTCCAATG
Locus tag: YberA_01001964
YberA_01001964 -129 4.4 AGTTGGGCATTTGTCCAATG
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdaR
Ortholog function: Glycerate-responsive transcriptional regulator for hexarate utilization, SdaR family
Escherichia coli str. K-12 substr. MG1655 b0162 -69 5.3 CTTTAGGCATTTGCACAATG
Salmonella typhimurium LT2 STM0210 -71 5.8 TTTTGTGCATTTGCACAATG
Citrobacter koseri ATCC BAA-895 CKO_03205 -17 5.1 GTTTGTGCAGATGCACAATG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00177 -17 5.4 CTTAGTGCAAATGCACAATG
Enterobacter sp. 638 Ent638_0702 -71 5.3 CTTTGTGCATTCGCACAATG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3300 -80 4.3 CTTTGTTAATTTGCACAATG
Position: -185
Score: 4.7
Sequence: TTTTGGGCCGATGCACAATG
Locus tag: YberA_01001966
YberA_01001966 -185 4.7 TTTTGGGCCGATGCACAATG
Supported by regulated orthologs from reference regulons
Ortholog gene name: garP
Ortholog function: D-galactarate permease, MFS family
Escherichia coli str. K-12 substr. MG1655 b3127 -186 6 TTATGTGCATATGCTCAAAA
-144 4.5 AAATTAGCATTTGCACAATG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03539 -206 4.7 CTTATGGCATAAGCACAATT
Enterobacter sp. 638 Ent638_3569 -208 5.4 GGTTGTGCATATGCTCAAAT
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