Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of UxuR regulog to Yersinia bercovieri ATCC 43970

Reference regulog properties
Source regulog: UxuR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Glucuronate utilization
Effector: Glucuronate
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Yersinia bercovieri ATCC 43970
Orthologous TF(s) YberA_01001246
Regulated genes 6
Built upon 44 sites [see more]
Predicted regulatory interactions in Yersinia bercovieri ATCC 43970
Locus tag Position Score Sequence
Position: -174
Score: 5.6
Sequence: AAATTGGTTTACCAAAAC
Locus tag: YberA_01000868
YberA_01000868 -174 5.6 AAATTGGTTTACCAAAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: lfaR
Ortholog function: periplasmic binding protein/LacI transcriptional regulator
Yersinia pestis KIM y3231 -194 5.4 ATATTGGTTCACCAAAAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1966 -176 6 AAATTGGTTTACCAAATT
Position: -284
Score: 5.5
Sequence: GTTTTGGTAAACCAATTT
Locus tag: YberA_01000869
YberA_01000869 -284 5.5 GTTTTGGTAAACCAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lfaT
Ortholog function: Putative MFS superfamily hexuronate transporter
Yersinia pestis KIM y3232 -217 5.2 ATTTTGGTGAACCAATAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1967 -162 5.9 AATTTGGTAAACCAATTT
Position: -298
Score: 4.5
Sequence: AAGTTGTTAGACCAGTTT
Locus tag: YberA_01001244
YberA_01001244 -298 4.5 AAGTTGTTAGACCAGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: uxuA
Ortholog function: Mannonate dehydratase (EC 4.2.1.8)
Escherichia coli str. K-12 substr. MG1655 b4322 -180 5.4 GATGTGGTTAACCAATTT
Salmonella typhimurium LT2 STM3135 -336 5.6 AAATTGGTTGACCAATCA
-149 5.2 GATTTGGTTAGCCAATTT
Yersinia pestis KIM y2902 -510 4.5 AAgTTGtTagACCAgTTT
-352 4 AAATTGGTaAgtCcAaTa
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1093 -109 5.2 TAATTGGTCAATCAATTT
Photorhabdus luminescens subsp. laumondii TTO1 plu0170 -77 5.7 TTTTTGGTTGACCAATTT
Position: -300
Score: 4.3
Sequence: ATGTTGTTATACCGATTT
Position: -66
Score: 4.2
Sequence: AAACTGGTCTAACAACTT
Locus tag: YberA_01001245
YberA_01001245 -300 4.3 ATGTTGTTATACCGATTT
-66 4.2 AAACTGGTCTAACAACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yeiQ
Ortholog function: paralog of D-mannonate oxidoreductase
Escherichia coli str. K-12 substr. MG1655 b2172 -176 4.1 AATTTATTATACCAATCT
Yersinia pestis KIM y2903 -363 4.3 AtgTTGtTatACCgATTT
-250 3.9 tAtTgGacTtACCAATTT
-92 4.2 AAAcTGGTctAaCAAcTT
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