Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of SdaR regulog to Yersinia frederiksenii ATCC 33641

Reference regulog properties
Source regulog: SdaR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: SdaR
Regulation mode: activator
Biological process: Glucarate utilization; Galactarate utilization
Effector: Glycerate
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Yersinia frederiksenii ATCC 33641
Orthologous TF(s) YfreA_01002887
Regulated genes 3
Built upon 31 sites [see more]
Predicted regulatory interactions in Yersinia frederiksenii ATCC 33641
Locus tag Position Score Sequence
Position: -120
Score: 4.9
Sequence: TATTGTGCATCTGCCTATAA
Locus tag: YfreA_01002884
YfreA_01002884 -120 4.9 TATTGTGCATCTGCCTATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: garL
Ortholog function: 2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20)
Escherichia coli str. K-12 substr. MG1655 b3126 -186 6 TTATGTGCATATGCTCAAAA
-144 4.5 AAATTAGCATTTGCACAATG
Salmonella typhimurium LT2 STM3249 -316 5.1 TCATGGGCGTATGCTCAAAA
-273 4.8 TAATGAGCGTTTGCACAATG
Citrobacter koseri ATCC BAA-895 CKO_04523 -203 5.6 CGTTGTGCAAATGCTCAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03538 -206 4.7 CTTATGGCATAAGCACAATT
Enterobacter sp. 638 Ent638_3568 -208 5.4 GGTTGTGCATATGCTCAAAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3574 -358 4.1 TGCTGGGCTATTGCCCAATG
Position: -185
Score: 5.3
Sequence: TTTTGGGCCTATGCACAATG
Locus tag: YfreA_01002889
YfreA_01002889 -185 5.3 TTTTGGGCCTATGCACAATG
Supported by regulated orthologs from reference regulons
Ortholog gene name: garP
Ortholog function: D-galactarate permease, MFS family
Escherichia coli str. K-12 substr. MG1655 b3127 -186 6 TTATGTGCATATGCTCAAAA
-144 4.5 AAATTAGCATTTGCACAATG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03539 -206 4.7 CTTATGGCATAAGCACAATT
Enterobacter sp. 638 Ent638_3569 -208 5.4 GGTTGTGCATATGCTCAAAT