Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of NsrR regulog to Yersinia frederiksenii ATCC 33641

Reference regulog properties
Source regulog: NsrR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: Rrf2
Regulation mode: repressor
Biological process: Nitrosative stress response
Effector: Nitric oxide
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Yersinia frederiksenii ATCC 33641
Orthologous TF(s) YfreA_01002115
Regulated genes 6
Built upon 73 sites [see more]
Predicted regulatory interactions in Yersinia frederiksenii ATCC 33641
Locus tag Position Score Sequence
Position: -219
Score: 4.1
Sequence: CATTCTCATCAAATACATG
Locus tag: YfreA_01000924
YfreA_01000924 -219 4.1 CATTCTCATCAAATACATG
Supported by regulated orthologs from reference regulons
Ortholog gene name: sodB
Ortholog function: Superoxide dismutase [Fe] (EC 1.15.1.1)
Escherichia coli str. K-12 substr. MG1655 b1656 -217 4.8 GTTGCATTTCAAATATTCG
Salmonella typhimurium LT2 STM1431 -185 4.3 GTTGTATACAAAATATCTT
Enterobacter sp. 638 Ent638_1791 -223 3.9 GTTGCATTCGCAATATAGT
Edwardsiella tarda EIB202 ETAE_1676 -172 4.1 CAGTCAGCTAAAATACACC
Proteus mirabilis HI4320 PMI1397 -69 3.5 AATTCAGTTGAATTAGATG
Position: -39
Score: 5.2
Sequence: CACGCATTACAAATGCAAC
Locus tag: YfreA_01001317
YfreA_01001317 -39 5.2 CACGCATTACAAATGCAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: hcp
Ortholog function: Hydroxylamine reductase (EC 1.7.-.-)
Yersinia pestis KIM y2819 -90 4.7 ATTGCATTAAAAATACCTT
-38 5.3 CACGCATTACAAATACAAC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2662 -38 5.8 CAAGCATTTAAAATGCAAC
Edwardsiella tarda EIB202 ETAE_2215 -37 5.2 CAAGCATAATAAATGCAAC
Proteus mirabilis HI4320 PMI2112 -58 5.3 GTTGCATATTTAATGCAAC
Position: -102
Score: 6.1
Sequence: GATGCATTTAAAATACATG
Locus tag: YfreA_01001589
YfreA_01001589 -102 6.1 GATGCATTTAAAATACATG
Supported by regulated orthologs from reference regulons
Ortholog gene name: hmp
Ortholog function: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17)
Escherichia coli str. K-12 substr. MG1655 b2552 -47 5.7 GATGCATTTGAGATACATC
Salmonella typhimurium LT2 STM2556 -79 4.8 GATCCATTTACAATGCAAG
-47 5.8 GATGCATTTGATATACATC
Citrobacter koseri ATCC BAA-895 CKO_00235 -47 5.5 GATGTATTTGACATACATC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02877 -47 6.3 GATGCATTTAAAATGCATC
Enterobacter sp. 638 Ent638_3037 -47 6.2 GATGCATATAAAATACATC
Yersinia pestis KIM y1321 -58 6.1 GATGCATTTAAAATACATG
Serratia proteamaculans 568 Spro_3639 -59 6 GATGCATTTAAAATGCATT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3251 -51 5.9 GATTCATATAAAATACAAC
Edwardsiella tarda EIB202 ETAE_2822 -45 6.2 GTTGCATTTAAAATACAAC
Proteus mirabilis HI4320 PMI1868 -61 5.4 GTTGTATTAAAAATACATG
Photorhabdus luminescens subsp. laumondii TTO1 plu3292 -64 5.4 GTTGCATTTAAATTACATG
Position: -44
Score: 5.7
Sequence: GTTGCATATTAAATGCATC
Locus tag: YfreA_01002929
YfreA_01002929 -44 5.7 GTTGCATATTAAATGCATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: tehB
Ortholog function: Tellurite resistance protein TehB
Yersinia pestis KIM y2361 -44 5.9 GTTGCATATAAAATGCATC
Serratia proteamaculans 568 Spro_0987 -63 5.5 CATGTATTTTATATGCAAC
Position: -225
Score: 4.1
Sequence: CAAGCATTCTTACTACAAC
Locus tag: YfreA_01003623
YfreA_01003623 -225 4.1 CAAGCATTCTTACTACAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrfA
Ortholog function: Nitrite reductase, cytochrome c(552)
Escherichia coli str. K-12 substr. MG1655 b4070 -165 4.3 GTGGTATTTTACATGCACT
-154 3.7 CATGCACTTACAATTGATT
Salmonella typhimurium LT2 STM4277 -167 4.4 GTGGTATTTTACATACACT
Citrobacter koseri ATCC BAA-895 CKO_03814 -170 4.3 GTGGTATTTTACATGCACT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1875 -125 4.2 ACAATATTTCAAATGCATC
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