Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of GntR regulog to Yersinia frederiksenii ATCC 33641

Reference regulog properties
Source regulog: GntR - Enterobacteriales  
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor
Biological process: Gluconate utilization
Effector: Gluconate
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Yersinia frederiksenii ATCC 33641
Orthologous TF(s) YfreA_01001165
Regulated genes 5
Built upon 61 sites [see more]
Predicted regulatory interactions in Yersinia frederiksenii ATCC 33641
Locus tag Position Score Sequence
Position: -171
Score: 5.7
Sequence: TCACGTTACCGGTAACATGT
Locus tag: YfreA_01000616
YfreA_01000616 -171 5.7 TCACGTTACCGGTAACATGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdxX
Ortholog function: putative 2-ketogluconate dehydrogenase
Yersinia pestis KIM y1651 -237 5.7 TCACGTTACCGGTAACATGT
Position: -235
Score: 4.3
Sequence: AGCTGTTACCGCTTACGTGA
Position: -89
Score: 4.4
Sequence: ATTTTTAACCTGTAACATGC
Locus tag: YfreA_01000617
YfreA_01000617 -235 4.3 AGCTGTTACCGCTTACGTGA
-89 4.4 ATTTTTAACCTGTAACATGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: idnR
Ortholog function: L-idonate utilization transcriptional regulator IdnR, LacI family
Escherichia coli str. K-12 substr. MG1655 b4264 -146 3.8 TAtTtcTACtGaTAAgAaTT
-116 3.8 TcAcGTTAtgcGTAACATag
Salmonella typhimurium LT2 STM4481 -116 4.3 TcAcGTTAtgcGTAACATTg
Citrobacter koseri ATCC BAA-895 CKO_02791 -39 4.8 TACAGTTACGCGTAACAGCT
Serratia proteamaculans 568 Spro_3289 -169 4.4 AGCTGTTACCTTTAACGTGA
Position: -217
Score: 4.2
Sequence: TCACGTAAGCGGTAACAGCT
Position: -204
Score: 3.9
Sequence: AACAGCTTGCCGTAACATGA
Locus tag: YfreA_01000618
YfreA_01000618 -217 4.2 TCACGTAAGCGGTAACAGCT
-204 3.9 AACAGCTTGCCGTAACATGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: idnO
Ortholog function: Gluconate 5-dehydrogenase (EC 1.1.1.69)
Escherichia coli str. K-12 substr. MG1655 b4266 -146 3.8 TAtTtcTACtGaTAAgAaTT
-116 3.8 TcAcGTTAtgcGTAACATag
Salmonella typhimurium LT2 STM4483 -116 4.3 TcAcGTTAtgcGTAACATTg
Citrobacter koseri ATCC BAA-895 CKO_02793 -39 4.8 TACAGTTACGCGTAACAGCT
Serratia proteamaculans 568 Spro_3288 -120 4.2 TcAcGTTAaaGGTAACAgcT
Position: -92
Score: 5.6
Sequence: ATTTGTTACCGGTATCATGA
Position: -78
Score: 5.5
Sequence: TCATGATACCGGTAACATGG
Locus tag: YfreA_01001163
YfreA_01001163 -92 5.6 ATTTGTTACCGGTATCATGA
-78 5.5 TCATGATACCGGTAACATGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: gntK
Ortholog function: Thermoresistant gluconokinase (EC 2.7.1.12)
Yersinia pestis KIM y3876 -91 5.6 ATTTGTTACCGGTATCATGA
-77 5.5 TCATGATACCGGTAACATGG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4159 -77 5.3 ATATGATACGGGTAACATGT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1839 -91 5.4 ACTTGTTACCGGTATCATGA
-77 5.1 TCATGATACCGGTAACGTGA
Position: -193
Score: 6
Sequence: CCATGTTACCGGTATCATGA
Locus tag: YfreA_01001164
YfreA_01001164 -193 6 CCATGTTACCGGTATCATGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gntT
Ortholog function: High-affinity H+/gluconate symporter
Yersinia pestis KIM y3875 -159 6 CCATGTTACCGGTATCATGA
-145 5.1 TCATGATACCGGTAACAAAT
Serratia proteamaculans 568 Spro_4651 -185 5.3 GGTTGTTACCGGTATCATGA
-171 5.4 TCATGATACCGGTAACAATG
© 2009-2020 RegPrecise