Propagation of GntR regulog to Yersinia frederiksenii ATCC 33641
| Source regulog: | GntR - Enterobacteriales |
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | repressor |
| Biological process: | Gluconate utilization |
| Effector: | Gluconate |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Yersinia frederiksenii ATCC 33641 |
| Orthologous TF(s) | YfreA_01001165 |
| Regulated genes | 5 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -171
Score: 5.7 Sequence: TCACGTTACCGGTAACATGT
Locus tag: YfreA_01000616
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| YfreA_01000616 | -171 | 5.7 | TCACGTTACCGGTAACATGT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sdxX | ||||
| Ortholog function: putative 2-ketogluconate dehydrogenase | ||||
| Yersinia pestis KIM | y1651 | -237 | 5.7 | TCACGTTACCGGTAACATGT |
|
Position: -235
Score: 4.3 Sequence: AGCTGTTACCGCTTACGTGA
Position: -89
Score: 4.4 Sequence: ATTTTTAACCTGTAACATGC
Locus tag: YfreA_01000617
|
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| YfreA_01000617 | -235 | 4.3 | AGCTGTTACCGCTTACGTGA | |
| -89 | 4.4 | ATTTTTAACCTGTAACATGC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: idnR | ||||
| Ortholog function: L-idonate utilization transcriptional regulator IdnR, LacI family | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4264 | -146 | 3.8 | TAtTtcTACtGaTAAgAaTT |
| -116 | 3.8 | TcAcGTTAtgcGTAACATag | ||
| Salmonella typhimurium LT2 | STM4481 | -116 | 4.3 | TcAcGTTAtgcGTAACATTg |
| Citrobacter koseri ATCC BAA-895 | CKO_02791 | -39 | 4.8 | TACAGTTACGCGTAACAGCT |
| Serratia proteamaculans 568 | Spro_3289 | -169 | 4.4 | AGCTGTTACCTTTAACGTGA |
|
Position: -217
Score: 4.2 Sequence: TCACGTAAGCGGTAACAGCT
Position: -204
Score: 3.9 Sequence: AACAGCTTGCCGTAACATGA
Locus tag: YfreA_01000618
|
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| YfreA_01000618 | -217 | 4.2 | TCACGTAAGCGGTAACAGCT | |
| -204 | 3.9 | AACAGCTTGCCGTAACATGA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: idnO | ||||
| Ortholog function: Gluconate 5-dehydrogenase (EC 1.1.1.69) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4266 | -146 | 3.8 | TAtTtcTACtGaTAAgAaTT |
| -116 | 3.8 | TcAcGTTAtgcGTAACATag | ||
| Salmonella typhimurium LT2 | STM4483 | -116 | 4.3 | TcAcGTTAtgcGTAACATTg |
| Citrobacter koseri ATCC BAA-895 | CKO_02793 | -39 | 4.8 | TACAGTTACGCGTAACAGCT |
| Serratia proteamaculans 568 | Spro_3288 | -120 | 4.2 | TcAcGTTAaaGGTAACAgcT |
|
Position: -92
Score: 5.6 Sequence: ATTTGTTACCGGTATCATGA
Position: -78
Score: 5.5 Sequence: TCATGATACCGGTAACATGG
Locus tag: YfreA_01001163
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| YfreA_01001163 | -92 | 5.6 | ATTTGTTACCGGTATCATGA | |
| -78 | 5.5 | TCATGATACCGGTAACATGG | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gntK | ||||
| Ortholog function: Thermoresistant gluconokinase (EC 2.7.1.12) | ||||
| Yersinia pestis KIM | y3876 | -91 | 5.6 | ATTTGTTACCGGTATCATGA |
| -77 | 5.5 | TCATGATACCGGTAACATGG | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4159 | -77 | 5.3 | ATATGATACGGGTAACATGT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1839 | -91 | 5.4 | ACTTGTTACCGGTATCATGA |
| -77 | 5.1 | TCATGATACCGGTAACGTGA | ||
|
Position: -193
Score: 6 Sequence: CCATGTTACCGGTATCATGA
Locus tag: YfreA_01001164
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| YfreA_01001164 | -193 | 6 | CCATGTTACCGGTATCATGA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gntT | ||||
| Ortholog function: High-affinity H+/gluconate symporter | ||||
| Yersinia pestis KIM | y3875 | -159 | 6 | CCATGTTACCGGTATCATGA |
| -145 | 5.1 | TCATGATACCGGTAACAAAT | ||
| Serratia proteamaculans 568 | Spro_4651 | -185 | 5.3 | GGTTGTTACCGGTATCATGA |
| -171 | 5.4 | TCATGATACCGGTAACAATG | ||