Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of NarP regulog to Yersinia frederiksenii ATCC 33641

Reference regulog properties
Source regulog: NarP - Enterobacteriales
Regulator type: Transcription factor
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrate; Nitrite
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Yersinia frederiksenii ATCC 33641
Orthologous TF(s) YfreA_01001490
Regulated genes 17
Built upon 125 sites [see more]
Predicted regulatory interactions in Yersinia frederiksenii ATCC 33641
Locus tag Position Score Sequence
Position: -237
Score: 3.3
Sequence: TCACCATAAAGCAGTG
Locus tag: YfreA_01000020
YfreA_01000020 -237 3.3 TCACCATAAAGCAGTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: dmsA
Ortholog function: Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-)
Escherichia coli str. K-12 substr. MG1655 b0894 -180 3.4 TACCGAACAATAATTA
Salmonella typhimurium LT2 STM0964 -161 4.6 TACCCTATTAGGGGTA
Citrobacter koseri ATCC BAA-895 CKO_02177 -166 5.2 TACCCCTTTGGGGGTA
Position: -111
Score: 4.6
Sequence: TACCTCGATAAGGGTA
Locus tag: YfreA_01000716
YfreA_01000716 -111 4.6 TACCTCGATAAGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccmA
Ortholog function: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Escherichia coli str. K-12 substr. MG1655 b2201 -129 4.6 TACCCCGATCGGGGTA
Salmonella typhimurium LT2 STM2254 -132 4.8 TACCTCTATCGGGGTA
Citrobacter koseri ATCC BAA-895 CKO_00574 -612 4.6 TACCCCAATCGGGGTA
Yersinia pestis KIM y1567 -112 4.8 TACCTCTATAAGGGTA
Serratia proteamaculans 568 Spro_3391 -49 4.9 TACCCCTATTGGAGTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1882 -86 4.6 TAACCCTTTAGGGTTA
Edwardsiella tarda EIB202 ETAE_2461 -64 4.4 TACCCCGAATGAGTTA
Position: -100
Score: 4.9
Sequence: TACCTCCTTAGAGGTA
Locus tag: YfreA_01001107
YfreA_01001107 -100 4.9 TACCTCCTTAGAGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nirB
Ortholog function: Nitrite reductase large subunit (EC 1.7.1.4)
Escherichia coli str. K-12 substr. MG1655 b3365 -101 5.1 TACCCATTAAGGAGTA
Salmonella typhimurium LT2 STM3474 -101 5 TACCCATTAAGAGGTA
Citrobacter koseri ATCC BAA-895 CKO_04789 -101 5.2 TACCTCTTAAGGAGTA
Yersinia pestis KIM y3945 -100 4.5 TACCACCTTAGAGGTA
Serratia proteamaculans 568 Spro_4595 -197 4.5 TACTCCCGAATGGGTA
-101 4.5 TACCACATTAGAGGTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4079 -100 4.8 TACCCACAAAGAAGTA
Proteus mirabilis HI4320 PMI1479 -134 4.1 TACTACTTTGGTAGTA
Position: -124
Score: 3.8
Sequence: TAACCCTAAAGAGTAA
Locus tag: YfreA_01001489
YfreA_01001489 -124 3.8 TAACCCTAAAGAGTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: napF
Ortholog function: Periplasmic nitrate reductase, ferredoxin-type protein NapF
Escherichia coli str. K-12 substr. MG1655 b2208 -129 4.6 TACCCCGATCGGGGTA
Salmonella typhimurium LT2 STM2261 -132 4.8 TACCTCTATCGGGGTA
Yersinia pestis KIM y1442 -158 4.3 TACTCATTATTCGGTA
Serratia proteamaculans 568 Spro_3488 -322 4.7 TACCCCTTTAGGGGGA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1898 -111 4.4 TACCTCTAAAGGGTGA
Edwardsiella tarda EIB202 ETAE_1114 -156 3.9 TAACCCAAAAGAGGAA
Position: -84
Score: 4.4
Sequence: TACCTCTTAAGAGCTA
Locus tag: YfreA_01002128
YfreA_01002128 -84 4.4 TACCTCTTAAGAGCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dnrN
Ortholog function: Nitric oxide-dependent regulator DnrN
Escherichia coli str. K-12 substr. MG1655 b4209 -79 3.7 TGCTACGTAAGGGTTA
Salmonella typhimurium LT2 STM4399 -78 3.9 CACCCCGAAAGAGTTA
Citrobacter koseri ATCC BAA-895 CKO_03623 -78 3.9 TGACCCGAAAGGGTTA
Yersinia pestis KIM y0652 -108 4.4 TACCCACTTGGAGTTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3606 -81 4.8 TACCTCGTAAGCGGTA
Position: -91
Score: 4.2
Sequence: TAACTACAAAAGGGTA
Locus tag: YfreA_01002481
YfreA_01002481 -91 4.2 TAACTACAAAAGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: atpB
Ortholog function: ATP synthase, F0 complex, A chain (EC 3.6.3.14)
Escherichia coli str. K-12 substr. MG1655 b3738 -31 4.6 TACCTCGAAGGGAGCA
Salmonella typhimurium LT2 STM3871 -30 4.5 TACCTCGAAGTGAGCA
Citrobacter koseri ATCC BAA-895 CKO_00078 -30 4.6 TACCTCGAAGGGAGCA
Serratia proteamaculans 568 Spro_0002 -33 4.6 TACCTCCTCAGGGGTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4518 -33 4.3 TACCTCTGAAAAGGTA
Edwardsiella tarda EIB202 ETAE_3527 -156 4.4 TACCTCCTGGGGGGTA
Position: -54
Score: 4.7
Sequence: TACTCATTTGTAGGTA
Locus tag: YfreA_01003539
YfreA_01003539 -54 4.7 TACTCATTTGTAGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompW
Ortholog function: Outer membrane protein W precursor
Escherichia coli str. K-12 substr. MG1655 b1256 -55 4.5 TACTCCAATGTAGGTA
Salmonella typhimurium LT2 STM1732 -55 4.7 TACTTCATTGTGGGTA
Citrobacter koseri ATCC BAA-895 CKO_01333 -55 4.5 TACTCCATTGTAGGTA
Yersinia pestis KIM y2044 -43 4.7 TACTCATTTGTAGGTA
Serratia proteamaculans 568 Spro_2674 -28 4.5 TACCCGTAAGTAGGTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2303 -56 4.9 TACCTACTTAGGGGTA
Edwardsiella tarda EIB202 ETAE_1528 -52 3.7 TCACTCAATATGGTTA
Proteus mirabilis HI4320 PMI1350 -59 4.9 TACTTATTAATGGGTA
Photorhabdus luminescens subsp. laumondii TTO1 plu2478 -55 3.8 TTCTAATATATGAGTA
Position: -259
Score: 4
Sequence: TACCTAGGAATAGTTA
Locus tag: YfreA_01003559
YfreA_01003559 -259 4 TACCTAGGAATAGTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhE
Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
Escherichia coli str. K-12 substr. MG1655 b1241 -215 4.7 TACCCAGAAGTGAGTA
Salmonella typhimurium LT2 STM1749 -216 4.6 TACTCAGAAGTGAGTA
Citrobacter koseri ATCC BAA-895 CKO_01318 -216 4.6 TACTCAGAAGTGAGTA
Yersinia pestis KIM y2023 -260 4 TACCTAAGAATAGTTA
Serratia proteamaculans 568 Spro_2704 -252 4 TACCCAAGAGTAGTTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2326 -289 4 CACCCACAAATAGGTA
Edwardsiella tarda EIB202 ETAE_1508 -239 4.4 TACCCAAGAATGAGTA
Position: -337
Score: 5
Sequence: TACCTATAAAGAGGTA
Locus tag: YfreA_01003623
YfreA_01003623 -337 5 TACCTATAAAGAGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrfA
Ortholog function: Nitrite reductase, cytochrome c(552)
Escherichia coli str. K-12 substr. MG1655 b4070 -175 4.5 TAACTCTAAAGTGGTA
Salmonella typhimurium LT2 STM4277 -177 4.5 TAACTCTAAAGTGGTA
Citrobacter koseri ATCC BAA-895 CKO_03814 -180 4.5 TAACTCTAAAGTGGTA
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