Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of ArgR regulog to Shigella dysenteriae 1012

Reference regulog properties
Source regulog: ArgR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: ArgR
Regulation mode: repressor
Biological process: Arginine biosynthesis; Arginine degradation
Effector: Arginine
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shigella dysenteriae 1012
Orthologous TF(s) No orthologous TFs found
Regulated genes 6
Built upon 259 sites [see more]
Predicted regulatory interactions in Shigella dysenteriae 1012
Locus tag Position Score Sequence
Position: -151
Score: 4.2
Sequence: GGTGCATTGAAATGCATA
Position: -141
Score: 4.3
Sequence: AATGCATACTTAAGCATT
Position: -131
Score: 3.8
Sequence: TAAGCATTTTTAATGAAA
Locus tag: Sdys1_01001729
Sdys1_01001729 -151 4.2 GGTGCATTGAAATGCATA
-141 4.3 AATGCATACTTAAGCATT
-131 3.8 TAAGCATTTTTAATGAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hisJ
Ortholog function: histidine ABC transporter, substrate-binding protein
Escherichia coli str. K-12 substr. MG1655 b2309 -151 4.2 GGTGCATTGAAATGCATA
-141 4.3 AATGCATACTTAAGCATT
-131 3.8 TAAGCATTTTTAATGAAA
-120 3.7 AATGAAAAATAATACGTC
Salmonella typhimurium LT2 STM2354 -140 4.1 AATGCATACTTAATCGAT
-129 4.1 AATCGATTTTTATGCAAA
Citrobacter koseri ATCC BAA-895 CKO_00478 -142 3.9 AATGCATACTTAAGCGCT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02699 -143 3.9 AATGCATAGTTAAGCGTT
Enterobacter sp. 638 Ent638_2858 -140 3.9 GGTGCATAGTTAAGCACT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3050 -227 4.2 AAAGATTTTATAATCAAA
Position: -106
Score: 5.2
Sequence: TATGAATAAAAATACAAT
Locus tag: Sdys1_01001885
Sdys1_01001885 -106 5.2 TATGAATAAAAATACAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: argC
Ortholog function: N-acetyl-gamma-glutamyl-phosphate reductase
Escherichia coli str. K-12 substr. MG1655 b3958 -127 4.1 TATCAATATTCATGCAGT
-106 5 TATGAATAAAAATACACT
Salmonella typhimurium LT2 STM4121 -62 4.2 TATCAATATTCATGCATT
-41 5 TATGAATAAAAATACATT
Citrobacter koseri ATCC BAA-895 CKO_03036 -128 4.2 TATCAATATTCATGCATT
-107 5 TGTGAATAAAAATACATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04247 -87 4.2 TATCAATATTCATGCATT
-66 5.3 TTTGAATAAAAATACAAT
Enterobacter sp. 638 Ent638_4028 -62 4.2 TATCAATATTCATGCACT
-41 5 TGTGAATAAAAATACACT
Yersinia pestis KIM y0310 -219 4.1 TATCAATATTCATGCAGT
-198 4.9 TATGAATAAAAATACAGT
-65 4.5 TATGTTTTTATATGCATA
Serratia proteamaculans 568 Spro_4781 -185 4.2 TATCAATATTCATGCATT
-164 5.1 TGTGAATAAAAATACAAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0192 -177 4.2 TATCAATATTCATGCATT
-156 5.3 TTTGAATAAAAATACAAT
Edwardsiella tarda EIB202 ETAE_3482 -178 4.3 TATCAATATTCATGCAAT
-157 5.2 TATGAATAAAAATACAAT
Proteus mirabilis HI4320 PMI3237 -75 4.2 TATCAATATTCATGCACT
-54 5.2 TTTGAATAAAAATACATT
Photorhabdus luminescens subsp. laumondii TTO1 plu4744 -77 4.2 TATCAATATTCATGCATT
-56 5.2 TTTGAATAAAAATACATT
Position: -65
Score: 5.2
Sequence: ATTGTATTTTTATTCATA
Locus tag: Sdys1_01001886
Sdys1_01001886 -65 5.2 ATTGTATTTTTATTCATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: argE
Ortholog function: acetylornithine deacetylase
Escherichia coli str. K-12 substr. MG1655 b3957 -65 5 AGTGTATTTTTATTCATA
-44 4.1 ACTGCATGAATATTGATA
Salmonella typhimurium LT2 STM4120 -65 5 AATGTATTTTTATTCATA
-44 4.2 AATGCATGAATATTGATA
Citrobacter koseri ATCC BAA-895 CKO_03037 -26 5 AATGTATTTTTATTCACA
-5 4.2 AaTGcATgaATATTgAta
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04246 -26 5.3 ATTGTATTTTTATTCAAA
-4 4.2 AaTGcATgaATATTgAta
Enterobacter sp. 638 Ent638_4029 -65 5 AGTGTATTTTTATTCACA
-44 4.2 AGTGCATGAATATTGATA
Erwinia amylovora ATCC 49946 EAM_0137 -65 5.2 ATTGTATTTTTATTCACT
-44 4.2 AATGCATGAATATTGATA
Yersinia pestis KIM y0309 -197 4.5 TATGCATATAAAAACATA
-64 4.9 ACTGTATTTTTATTCATA
-43 4.1 ACTGCATGAATATTGATA
Serratia proteamaculans 568 Spro_4782 -70 5.1 ATTGTATTTTTATTCACA
-49 4.2 AATGCATGAATATTGATA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0191 -64 5.3 ATTGTATTTTTATTCAAA
-43 4.2 AATGCATGAATATTGATA
Edwardsiella tarda EIB202 ETAE_3483 -64 5.2 ATTGTATTTTTATTCATA
-43 4.3 ATTGCATGAATATTGATA
Proteus mirabilis HI4320 PMI3236 -64 5.2 AATGTATTTTTATTCAAA
-43 4.2 AGTGCATGAATATTGATA
Photorhabdus luminescens subsp. laumondii TTO1 plu4745 -64 5.2 AATGTATTTTTATTCAAA
-43 4.2 AATGCATGAATATTGATA
Position: -181
Score: 4.2
Sequence: ATTCACTTTATATGCACT
Locus tag: Sdys1_01002128
Sdys1_01002128 -181 4.2 ATTCACTTTATATGCACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: astC
Ortholog function: acetylornithine and succinylornithine aminotransferase
Escherichia coli str. K-12 substr. MG1655 b1748 -233 3.7 TCTGCATAACATTGCGTT
-192 3.6 ATCGCAAACGTATTCACT
-181 4.2 ATTCACTTTATATGCACT
Salmonella typhimurium LT2 STM1303 -234 4.3 ACTGAATAATATTTCGCT
-182 3.7 ATTCACTTTTCATGCAGT
Citrobacter koseri ATCC BAA-895 CKO_01774 -233 4.4 ACTGAATAATATTTCGAT
-192 4.4 TTCGCAAATATATTCACT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01221 -182 4.2 ATTCACTAAATATGCATT
Enterobacter sp. 638 Ent638_1696 -234 4.3 TGTGAATAATATTTCTGT
-192 4.1 GCTGTAAAAATATTCACT
-181 4.2 ATTCACTTATTATGCATT
Position: -43
Score: 5.5
Sequence: ATTGAATTTTAATTCATT
Locus tag: Sdys1_01002328
Sdys1_01002328 -43 5.5 ATTGAATTTTAATTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: argF
Ortholog function: ornithine carbamoyltransferase
Escherichia coli str. K-12 substr. MG1655 b4254 -64 4.3 AATGAATAATCATCCATA
-43 5.5 ATTGAATTTTAATTCATT
Position: -49
Score: 4.7
Sequence: ACAGAATAAAAATACAAT
Position: -28
Score: 4.5
Sequence: TTCGAATAATCATGCAAA
Locus tag: Sdys1_01002538
Sdys1_01002538 -49 4.7 ACAGAATAAAAATACAAT
-28 4.5 TTCGAATAATCATGCAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: argA
Ortholog function: N-alpha-acetylglutamate synthase
Escherichia coli str. K-12 substr. MG1655 b2818 -49 4.6 ACAGAATAAAAATACACT
-28 4.5 TTCGAATAATCATGCAAA
Salmonella typhimurium LT2 STM2992 -52 4.6 ACAGAATAAAAATACACT
-31 4.9 TTCGAATAATAATTCACT
Citrobacter koseri ATCC BAA-895 CKO_04183 -140 4.6 ACAGAATAAAAATACATT
-119 4.6 TTCGAATAATCATGCAAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03226 -50 4.7 ACAGAATAAAAATACAAT
-29 4.4 TACGAATAATCATGCATT
Enterobacter sp. 638 Ent638_3261 -51 4.7 ATCGAATAAAAATACACA
-30 4.5 TACGAATAAACATTCACT
Erwinia amylovora ATCC 49946 EAM_2726 -50 4.7 AAAGAATAAAAATACACT
-29 4.9 ATCGAATAATAATGCATA
Yersinia pestis KIM y3162 -122 3.8 TCAGTTTATTAATACATA
-103 4.2 ACTTTATATATATGCAGT
-51 4.8 AAAGAATAAAAATACAAA
-30 4.8 ACCGAATAAAAATTCAAA
Serratia proteamaculans 568 Spro_3812 -51 4.8 AAAGAATAAAAATACAAA
-30 4.8 ATCGTATAAATATGCAAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0999 -50 4.5 AAAGAATAAAAATACAGA
-29 4.8 TACGAATAAAAATGCAAA
Edwardsiella tarda EIB202 ETAE_0713 100 3.9 GCAGAATAAAAATACAGA
121 4.4 AGCGAATAGATATTCACA
Proteus mirabilis HI4320 PMI2307 -52 4.7 AAAGAATAAAAATACATT
-31 4.3 TGCGAATAAAAATTCACC
47 4.3 TCCGTATATTAATGCACA
Photorhabdus luminescens subsp. laumondii TTO1 plu0644 -51 4.1 AAGGAATAAAAAAGCATA
-30 5 TACGAATAAAAATTCAAT
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