Propagation of Fur regulog to Yersinia intermedia ATCC 29909
| Source regulog: | Fur - Enterobacteriales |
| Regulator type: | Transcription factor |
| Regulator family: | FUR |
| Regulation mode: | repressor (activator) |
| Biological process: | Iron homeostasis |
| Effector: | Iron ion, (Fe2+) |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Yersinia intermedia ATCC 29909 |
| Orthologous TF(s) | YintA_01003821 |
| Regulated genes | 41 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -235
Score: 3.5 Sequence: GGAAATTAAAATAAGAATC
Position: -229
Score: 4.3 Sequence: TAAAATAAGAATCATTCCT
Position: -223
Score: 3.5 Sequence: AAGAATCATTCCTTTTAGT
Position: -196
Score: 3.6 Sequence: TGCAATATTAATGATTTTT
Position: -193
Score: 3.6 Sequence: AATATTAATGATTTTTATA
Position: -190
Score: 4.3 Sequence: ATTAATGATTTTTATAATA
Position: -187
Score: 3.5 Sequence: AATGATTTTTATAATAATT
Position: -184
Score: 4.3 Sequence: GATTTTTATAATAATTAAT
Position: -181
Score: 3.6 Sequence: TTTTATAATAATTAATTCA
Locus tag: YintA_01000125
|
||||
| YintA_01000125 | -235 | 3.5 | GGAAATTAAAATAAGAATC | |
| -229 | 4.3 | TAAAATAAGAATCATTCCT | ||
| -223 | 3.5 | AAGAATCATTCCTTTTAGT | ||
| -196 | 3.6 | TGCAATATTAATGATTTTT | ||
| -193 | 3.6 | AATATTAATGATTTTTATA | ||
| -190 | 4.3 | ATTAATGATTTTTATAATA | ||
| -187 | 3.5 | AATGATTTTTATAATAATT | ||
| -184 | 4.3 | GATTTTTATAATAATTAAT | ||
| -181 | 3.6 | TTTTATAATAATTAATTCA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ftnA | ||||
| Ortholog function: ferritin | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1905 | -127 | 3.4 | GgTAATGcgttTtATTccC |
| -121 | 3 | GcgttTtATtccCATTcgt | ||
| Salmonella typhimurium LT2 | STM1935 | -100 | 4 | AATAATTAAATTTAATATT |
| Citrobacter koseri ATCC BAA-895 | CKO_01042 | -97 | 4.3 | AATAATTAAATTTATTATT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02402 | -161 | 4 | ATAAATTAAAAGCATTCTC |
| -155 | 3.8 | TAAAAGCATTCTCATTTAT | ||
| Enterobacter sp. 638 | Ent638_2486 | -103 | 3.7 | TATTTTAATAAATAATATC |
| -97 | 3.6 | AATAAATAATATCTTTATT | ||
| Erwinia amylovora ATCC 49946 | EAM_2940 | -131 | 4.4 | TGGAATGATTATCAATTAC |
| Yersinia pestis KIM | y2524 | -93 | 4.4 | AATAATGTGAATGATTATC |
| -87 | 4.1 | GTGAATGATTATCATGATG | ||
| Serratia proteamaculans 568 | Spro_1942 | -174 | 4.5 | GAAAATAGTTATCATAATT |
| -168 | 4 | AGTTATCATAATTATTTAA | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2473 | -158 | 4.6 | TTAAATGATAATGAATATC |
| -152 | 4.8 | GATAATGAATATCAATAGC | ||
| Proteus mirabilis HI4320 | PMI1007 | -184 | 4.7 | GTTAATGATAATCAATTCC |
| -178 | 4.1 | GATAATCAATTCCATTAAT | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2689 | -147 | 4.4 | TTAAATGAGATTCATTTTC |
| -141 | 4.4 | GAGATTCATTTTCATTTTT | ||
|
Position: -48
Score: 4.6 Sequence: GCTAATGATATTGATAATC
Position: -42
Score: 5.6 Sequence: GATATTGATAATCATTTTC
Position: -36
Score: 4.8 Sequence: GATAATCATTTTCATTTAA
Locus tag: YintA_01000179
|
||||
| YintA_01000179 | -48 | 4.6 | GCTAATGATATTGATAATC | |
| -42 | 5.6 | GATATTGATAATCATTTTC | ||
| -36 | 4.8 | GATAATCATTTTCATTTAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sitA | ||||
| Ortholog function: iron ABC transporter, periplasmic substrate-binding protein | ||||
| Salmonella typhimurium LT2 | STM2861 | -99 | 4.5 | GCAAATAAGAATTATTTTC |
| -93 | 4.2 | AAGAATTATTTTCATTTAT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_04090 | -84 | 4.5 | GTAAATAAGAATTATTTTC |
| -78 | 4.2 | AAGAATTATTTTCATTTAT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00940 | -111 | 4.1 | GATAAAGATAATTTTTCTC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03078 | -99 | 4.5 | GCAAATAAGAATTATTTTC |
| -93 | 4.2 | AAGAATTATTTTCATTTAT | ||
| Enterobacter sp. 638 | Ent638_1111 | -98 | 4.9 | TTTAATGATAATTATTTTC |
| -92 | 4.5 | GATAATTATTTTCATTTAA | ||
| Yersinia pestis KIM | y1897 | -39 | 5.2 | GGTATTGATAATCATTTTC |
| -33 | 4.7 | GATAATCATTTTCATTTGT | ||
| Serratia proteamaculans 568 | Spro_2133 | -41 | 5.4 | GATATTGATAATCATTTTC |
| -35 | 4.6 | GATAATCATTTTCATTTGA | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2392 | -53 | 5.1 | GATATTGATAATTATTCTC |
| Proteus mirabilis HI4320 | PMI1027 | -63 | 4.2 | TGAAATGATATTGATAATC |
| -57 | 5.5 | GATATTGATAATCATTATC | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2672 | -49 | 5.2 | GATATTGATAATCGTTATC |
| -43 | 4.5 | GATAATCGTTATCATATAC | ||
|
Position: -50
Score: 5 Sequence: GGAGATGATAATCATTATC
Position: -44
Score: 4.7 Sequence: GATAATCATTATCACTTAA
Locus tag: YintA_01000219
|
||||
| YintA_01000219 | -50 | 5 | GGAGATGATAATCATTATC | |
| -44 | 4.7 | GATAATCATTATCACTTAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hemP | ||||
| Ortholog function: hemin uptake protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1705 | -47 | 4.1 | AATATTGATAATAAGAATC |
| -41 | 4.6 | GATAATAAGAATCATTGTT | ||
| Salmonella typhimurium LT2 | STM1346 | -47 | 4.5 | ATTATTGATAATAATAATC |
| -41 | 4.7 | GATAATAATAATCATTGTG | ||
| Citrobacter koseri ATCC BAA-895 | CKO_01729 | -50 | 4.7 | AATATTGATAATAATAATC |
| -44 | 4.9 | GATAATAATAATCATTGTT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03737 | 14 | 4.1 | CTTGATGATAATCATTCTT |
| 20 | 4.8 | GATAATCATTCTTGTTATC | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02163 | -10 | 4.8 | ATTATTGATAATGATTATC |
| -4 | 5.1 | GATAATGATTATCATTGTT | ||
| Enterobacter sp. 638 | Ent638_1742 | -50 | 4.2 | TTTGTTGATAATGATTATC |
| -44 | 5.1 | GATAATGATTATCATTGTT | ||
| Serratia proteamaculans 568 | Spro_2170 | -68 | 4 | TCACATGATAATGATTCTC |
| -62 | 4.6 | GATAATGATTCTCACTTTG | ||
| Edwardsiella tarda EIB202 | ETAE_1796 | -10 | 4.1 | TTATACGATAATGATTATC |
| -4 | 5.1 | GATAATGATTATCATTAAG | ||
| Proteus mirabilis HI4320 | PMI1424 | -52 | 5.1 | GATAACGATAATGATTATC |
| -46 | 5.4 | GATAATGATTATCATAATC | ||
| -40 | 4.4 | GATTATCATAATCATAACC | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2631 | -54 | 4.7 | TATAACGATAATAATTCTC |
| -48 | 4.6 | GATAATAATTCTCACTATG | ||
|
Position: -126
Score: 4.6 Sequence: TGAAGTGATAATTATTATC
Position: -120
Score: 4.9 Sequence: GATAATTATTATCACTACC
Locus tag: YintA_01000226
|
||||
| YintA_01000226 | -126 | 4.6 | TGAAGTGATAATTATTATC | |
| -120 | 4.9 | GATAATTATTATCACTACC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sufA | ||||
| Ortholog function: scaffold protein for iron-sulfur cluster assembly | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1684 | -65 | 4.4 | TGAACTGATAATCATTATC |
| -59 | 5.1 | GATAATCATTATCACTAAC | ||
| Salmonella typhimurium LT2 | STM1369 | -66 | 4.7 | TGAAGTGATAATCATTATC |
| -60 | 5.1 | GATAATCATTATCACTAAC | ||
| Citrobacter koseri ATCC BAA-895 | CKO_01717 | -66 | 4.7 | TGAAGTGATAATCATTATC |
| -60 | 5.1 | GATAATCATTATCACTAAC | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02141 | -66 | 4.7 | TGAAGTGATAATCATTATC |
| -60 | 5.1 | GATAATCATTATCACTAAC | ||
| Enterobacter sp. 638 | Ent638_1760 | -67 | 4.4 | TGAAGTGATAATCGTTATC |
| -61 | 4.7 | GATAATCGTTATCACTAAC | ||
| Yersinia pestis KIM | y1934 | -129 | 4.5 | TGAAGTGATAATTATTATC |
| -123 | 4.8 | GATAATTATTATCACTACC | ||
| Serratia proteamaculans 568 | Spro_2179 | -77 | 4.4 | TGAAGTGATAATCGTTATC |
| -71 | 4.7 | GATAATCGTTATCACTAAC | ||
| Proteus mirabilis HI4320 | PMI1416 | -66 | 4.4 | GATAAGGGTTATCATTACC |
| -60 | 4 | GGTTATCATTACCATTAGA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2622 | -87 | 4.4 | GATAAAGGTTATCATTACC |
| -81 | 4.3 | GGTTATCATTACCATTATA | ||
|
Position: -112
Score: 5.1 Sequence: GCAAATAATTATCATTAAC
Locus tag: YintA_01000304
|
||||
| YintA_01000304 | -112 | 5.1 | GCAAATAATTATCATTAAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: viuB | ||||
| Ortholog function: FAD-binding 9 siderophore-interacting domain protein | ||||
| Serratia proteamaculans 568 | Spro_2919 | -65 | 4.5 | GCAAACAATTCTCATTATC |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2023 | -72 | 4.4 | CGAAATGATAATAGTTATC |
| Proteus mirabilis HI4320 | PMI1437 | -66 | 4.6 | AATAGTGATAATGACTATC |
| -60 | 5 | GATAATGACTATCATTATT | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2040 | -97 | 5 | TTTAATGATAATAATTATC |
| -91 | 5.5 | GATAATAATTATCATTTTC | ||
|
Position: -114
Score: 4.7 Sequence: GTAAATAAATCTCATTATC
Locus tag: YintA_01000323
|
||||
| YintA_01000323 | -114 | 4.7 | GTAAATAAATCTCATTATC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yijD1 | ||||
| Ortholog function: putative iron permease FTR1 | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02057 | -98 | 5.3 | TATAATGATAATAATTATC |
| -92 | 5 | GATAATAATTATCATTTGT | ||
| Yersinia pestis KIM | y2370 | -47 | 4.1 | GTTAATGTTAATAAATCTC |
| -41 | 4.5 | GTTAATAAATCTCATTATT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1510 | -41 | 4.7 | GATAATAAGAATAAATATC |
| -35 | 4.2 | AAGAATAAATATCATTTGT | ||
|
Position: -104
Score: 4.9 Sequence: CAGAATGATAATCACTATC
Position: -98
Score: 4.4 Sequence: GATAATCACTATCGTTCTT
Locus tag: YintA_01000394
|
||||
| YintA_01000394 | -104 | 4.9 | CAGAATGATAATCACTATC | |
| -98 | 4.4 | GATAATCACTATCGTTCTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yijD | ||||
| Ortholog function: iron permease FTR1 | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01045 | -76 | 5 | TGTAATGATAATCACTATC |
| -70 | 4.2 | GATAATCACTATCATAAAT | ||
| Enterobacter sp. 638 | Ent638_1545 | -76 | 4.9 | CGTAATGATAATCACTATC |
| Erwinia amylovora ATCC 49946 | EAM_2059 | -80 | 4.6 | GATAATGATAATCCCTATC |
| Yersinia pestis KIM | y2452 | -84 | 4.4 | CAGAATGATAATCACAATC |
| -78 | 4.3 | GATAATCACAATCGTTTTA | ||
| Serratia proteamaculans 568 | Spro_2929 | -109 | 4.8 | CAGAATGATAATCACTATC |
|
Position: -107
Score: 4.3 Sequence: CACTTTGATAATTATTATC
Position: -101
Score: 4.3 Sequence: GATAATTATTATCGTTTCG
Locus tag: YintA_01000461
|
||||
| YintA_01000461 | -107 | 4.3 | CACTTTGATAATTATTATC | |
| -101 | 4.3 | GATAATTATTATCGTTTCG | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fhuC | ||||
| Ortholog function: iron-hydroxamate transporter ATP-binding subunit | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0151 | -57 | 4.4 | CTTTATAATAATCATTCTC |
| -51 | 4.5 | AATAATCATTCTCGTTTAC | ||
| Salmonella typhimurium LT2 | STM0192 | -56 | 4.8 | GGTTATAATAATAATTATC |
| -50 | 4.8 | AATAATAATTATCGTTTAC | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03217 | -57 | 4 | GGTCATAAGAATAATTCTC |
| -51 | 4.3 | AAGAATAATTCTCGTTTAC | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00166 | -56 | 4 | CGTCATAATAATAATTCTC |
| -50 | 4.5 | AATAATAATTCTCGTTTAC | ||
| Enterobacter sp. 638 | Ent638_0691 | -58 | 4.3 | GGTCATAATAATAATTCTC |
| -52 | 4.5 | AATAATAATTCTCGTTTAC | ||
| Yersinia pestis KIM | y0796 | -157 | 4.4 | CGTTTTAATAATCATTATC |
| -151 | 4.7 | AATAATCATTATCGTTACC | ||
| Serratia proteamaculans 568 | Spro_3978 | -60 | 4.7 | GCTTATAATAATTATTATC |
| -54 | 4.7 | AATAATTATTATCGTTTAC | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3312 | -123 | 4.3 | CTTTATCGTAATCATTATC |
| -117 | 4.5 | CGTAATCATTATCGTTCTC | ||
|
Position: -281
Score: 4.4 Sequence: AATGATGATAATGGTTCTC
Position: -275
Score: 4.7 Sequence: GATAATGGTTCTCAATAGC
Locus tag: YintA_01000717
|
||||
| YintA_01000717 | -281 | 4.4 | AATGATGATAATGGTTCTC | |
| -275 | 4.7 | GATAATGGTTCTCAATAGC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sapA | ||||
| Ortholog function: ABC peptide transport periplasmic protein | ||||
| Erwinia amylovora ATCC 49946 | EAM_1842 | -198 | 5.1 | GTTAATAATAATCATTCTC |
| -192 | 5.2 | AATAATCATTCTCATTATC | ||
| Edwardsiella tarda EIB202 | ETAE_1870 | -222 | 4.1 | TTGAATGATAATGTTTATC |
| -216 | 4.8 | GATAATGTTTATCAATATC | ||
| Proteus mirabilis HI4320 | PMI1378 | -131 | 4.7 | GATAATCTTTATCATTAGC |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2587 | -141 | 4 | ACAGATGATAATGGTTATC |
| -135 | 4.3 | GATAATGGTTATCAATACG | ||
|
Position: -138
Score: 4.3 Sequence: GCGCTTGATAATTATTATC
Position: -132
Score: 4.9 Sequence: GATAATTATTATCATTTAG
Locus tag: YintA_01001123
|
||||
| YintA_01001123 | -138 | 4.3 | GCGCTTGATAATTATTATC | |
| -132 | 4.9 | GATAATTATTATCATTTAG | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mntH | ||||
| Ortholog function: Mn2+/Fe2+ transporter, NRAMP family | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2392 | -68 | 4.7 | GAATTTGATAATCATTCTC |
| -62 | 4.2 | GATAATCATTCTCGTTTGG | ||
| Salmonella typhimurium LT2 | STM2408 | -68 | 4.5 | GCACTTGATAATCATTATC |
| -62 | 4.8 | GATAATCATTATCAATAAA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00404 | -50 | 4.3 | GCACTTGATAATCATTCTC |
| -44 | 4.5 | GATAATCATTCTCAATAAA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02743 | -68 | 4.3 | GAACTTGATAATCATTCGC |
| -62 | 4.3 | GATAATCATTCGCATTTTG | ||
| Enterobacter sp. 638 | Ent638_2926 | -67 | 4.8 | GATCTTGATAATCATTCTC |
| -61 | 4.8 | GATAATCATTCTCATTTTG | ||
| Yersinia pestis KIM | y1500 | -78 | 4 | GCGCTTGATAATTATTCTC |
| -72 | 4.6 | GATAATTATTCTCATTTAA | ||
| Serratia proteamaculans 568 | Spro_3415 | -66 | 4.3 | GCACTTGATAATTATTATC |
| -60 | 5.2 | GATAATTATTATCATTTAC | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0843 | -63 | 4.5 | GCACTTGATAATCATTATC |
| -57 | 5.2 | GATAATCATTATCATTTTT | ||
| Edwardsiella tarda EIB202 | ETAE_1142 | -134 | 4.5 | GCAGTTGATAATCATTATC |
|
Position: -121
Score: 5.5 Sequence: GACAATGATAATCATTATC
Position: -115
Score: 5.2 Sequence: GATAATCATTATCACTCTC
Locus tag: YintA_01001539
|
||||
| YintA_01001539 | -121 | 5.5 | GACAATGATAATCATTATC | |
| -115 | 5.2 | GATAATCATTATCACTCTC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yhhY | ||||
| Ortholog function: GCN5-related N-acetyltransferase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3441 | -119 | 4.9 | GACAATAATAATCATTCTC |
| -113 | 4.7 | AATAATCATTCTCATTCGC | ||
| Erwinia amylovora ATCC 49946 | EAM_3278 | -118 | 4.9 | GGCAATAATAATCATTATC |
| -112 | 4.9 | AATAATCATTATCATTCGC | ||
| Serratia proteamaculans 568 | Spro_4654 | -128 | 4.6 | CGCAATAATAATCATTATC |
| -122 | 4.7 | AATAATCATTATCATTCGT | ||
|
Position: -97
Score: 4.3 Sequence: GAAAACGATTCTTACTATT
Locus tag: YintA_01001570
|
||||
| YintA_01001570 | -97 | 4.3 | GAAAACGATTCTTACTATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: feoA | ||||
| Ortholog function: ferrous iron transport protein A | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3408 | -138 | 3.4 | GcTgATagaAAcCATTcTC |
| -132 | 4.5 | AGAAACCATTCTCATTATC | ||
| Salmonella typhimurium LT2 | STM3505 | -140 | 3.5 | GAagATagaAAcCATTcTC |
| -133 | 4.5 | AGAAACCATTCTCATTATC | ||
| Citrobacter koseri ATCC BAA-895 | CKO_04830 | -139 | 4.1 | GATGATAAAAACCATTCTC |
| -133 | 4.7 | AAAAACCATTCTCATTATC | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03778 | -133 | 4.1 | GATGATAAAAACCATTCTC |
| -127 | 4.7 | AAAAACCATTCTCATTATC | ||
| Enterobacter sp. 638 | Ent638_3821 | -62 | 4.5 | AGAAACCATTCTCATTATC |
| Yersinia pestis KIM | y3912 | -118 | 4.1 | GAGCATGAAAATAATTCTC |
| -112 | 4.4 | GAAAATAATTCTCAGTATT | ||
| Serratia proteamaculans 568 | Spro_4628 | -155 | 4.3 | GAATACGATAATGATTCTC |
| -149 | 4.9 | GATAATGATTCTCACTATT | ||
| Edwardsiella tarda EIB202 | ETAE_3283 | -163 | 4.3 | GAAAACGATTATCAGTTTT |
| -157 | 4.1 | GATTATCAGTTTTATTATA | ||
| Proteus mirabilis HI4320 | PMI2920 | -138 | 4 | AAAGATGGTTATAATTCTC |
| -132 | 4.3 | GGTTATAATTCTCATTTGC | ||
| -59 | 4.8 | GTTAATAATTATCAGTATC | ||
| -53 | 4.6 | AATTATCAGTATCATTATT | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0209 | -244 | 4 | AATGTTGGTTATTATTCTC |
| -238 | 4.2 | GGTTATTATTCTCATTTGC | ||
|
Position: -237
Score: 4.3 Sequence: AATATTGAGAAGTATTATT
Position: -231
Score: 4.2 Sequence: GAGAAGTATTATTATTTGC
Locus tag: YintA_01001892
|
||||
| YintA_01001892 | -237 | 4.3 | AATATTGAGAAGTATTATT | |
| -231 | 4.2 | GAGAAGTATTATTATTTGC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: CKO_02589 | ||||
| Ortholog function: TonB-dependent siderophore receptor | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02589 | -114 | 4.2 | GCAAATGGTAATGATTTGC |
| -108 | 4.3 | GGTAATGATTTGCAATAAC | ||
| Enterobacter sp. 638 | Ent638_1079 | -109 | 4.3 | GGGAATGATTTGCAATATC |
| Proteus mirabilis HI4320 | PMI0363 | -103 | 4.9 | TAGAATAATAATAATTATC |
| -97 | 5 | AATAATAATTATCATTAGT | ||
|
Position: -207
Score: 4 Sequence: TTCAATAAAAATAATTCTC
Position: -201
Score: 4.1 Sequence: AAAAATAATTCTCTTTTAT
Position: -161
Score: 4.9 Sequence: ACTAATGATAATTACTATC
Position: -155
Score: 4.2 Sequence: GATAATTACTATCAATCCC
Locus tag: YintA_01001907
|
||||
| YintA_01001907 | -207 | 4 | TTCAATAAAAATAATTCTC | |
| -201 | 4.1 | AAAAATAATTCTCTTTTAT | ||
| -161 | 4.9 | ACTAATGATAATTACTATC | ||
| -155 | 4.2 | GATAATTACTATCAATCCC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: exbB | ||||
| Ortholog function: TonB-dependent siderophore transporter component ExbB | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3006 | -82 | 4.1 | AGTAATGAGAACGACTATC |
| Salmonella typhimurium LT2 | STM3159 | -82 | 4.1 | AGTAATGAGAACGACTATC |
| Citrobacter koseri ATCC BAA-895 | CKO_04401 | -97 | 4.1 | AGTAATGAGAACGACTATC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03426 | -97 | 4.3 | ACTAATGAGAACCACTATC |
| Enterobacter sp. 638 | Ent638_3417 | -97 | 4.3 | ACTAATGAGAACCACTATC |
| Yersinia pestis KIM | y3495 | -71 | 4.8 | ACTAATGATAATTACTATC |
| Serratia proteamaculans 568 | Spro_4211 | -94 | 4.4 | AATAATGAGAACTACTATC |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0358 | -206 | 4.3 | AATAATGAGAACGACTATC |
| Proteus mirabilis HI4320 | PMI0029 | -170 | 4.8 | AGTAATGATAATTACTATC |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3941 | -98 | 5.1 | AATAATGATAATTACTATC |
|
Position: -223
Score: 5 Sequence: GATAAAGATAATAATTATC
Position: -217
Score: 4.7 Sequence: GATAATAATTATCATTGAA
Locus tag: YintA_01002069
|
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| YintA_01002069 | -223 | 5 | GATAAAGATAATAATTATC | |
| -217 | 4.7 | GATAATAATTATCATTGAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: foxA | ||||
| Ortholog function: TonB-dependent siderophore receptor | ||||
| Salmonella typhimurium LT2 | STM0364 | -26 | 4.5 | GGTAATAATTCTTATTTAC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02304 | -98 | 4.2 | AATAATAATTCGCATTACT |
| Enterobacter sp. 638 | Ent638_0493 | -45 | 4.7 | GGTAATAATTCTTATTAAC |
| Erwinia amylovora ATCC 49946 | EAM_0358 | -123 | 4.4 | AAAAAAGATAATAATTCTC |
| -117 | 5 | GATAATAATTCTCATTTAC | ||
| Serratia proteamaculans 568 | Spro_2736 | -140 | 4.9 | GATAAAGATAATAATTATC |
| -134 | 5.2 | GATAATAATTATCATTAAT | ||
|
Position: -36
Score: 4.8 Sequence: GCTTATGATACTTATTATC
Position: -30
Score: 4.6 Sequence: GATACTTATTATCATTACC
Locus tag: YintA_01002077
|
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| YintA_01002077 | -36 | 4.8 | GCTTATGATACTTATTATC | |
| -30 | 4.6 | GATACTTATTATCATTACC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hemP | ||||
| Ortholog function: hemin uptake protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1705 | -47 | 4.1 | AATATTGATAATAAGAATC |
| -41 | 4.6 | GATAATAAGAATCATTGTT | ||
| Salmonella typhimurium LT2 | STM1346 | -47 | 4.5 | ATTATTGATAATAATAATC |
| -41 | 4.7 | GATAATAATAATCATTGTG | ||
| Citrobacter koseri ATCC BAA-895 | CKO_01729 | -50 | 4.7 | AATATTGATAATAATAATC |
| -44 | 4.9 | GATAATAATAATCATTGTT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03737 | 14 | 4.1 | CTTGATGATAATCATTCTT |
| 20 | 4.8 | GATAATCATTCTTGTTATC | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02163 | -10 | 4.8 | ATTATTGATAATGATTATC |
| -4 | 5.1 | GATAATGATTATCATTGTT | ||
| Enterobacter sp. 638 | Ent638_1742 | -50 | 4.2 | TTTGTTGATAATGATTATC |
| -44 | 5.1 | GATAATGATTATCATTGTT | ||
| Serratia proteamaculans 568 | Spro_2170 | -68 | 4 | TCACATGATAATGATTCTC |
| -62 | 4.6 | GATAATGATTCTCACTTTG | ||
| Edwardsiella tarda EIB202 | ETAE_1796 | -10 | 4.1 | TTATACGATAATGATTATC |
| -4 | 5.1 | GATAATGATTATCATTAAG | ||
| Proteus mirabilis HI4320 | PMI1424 | -52 | 5.1 | GATAACGATAATGATTATC |
| -46 | 5.4 | GATAATGATTATCATAATC | ||
| -40 | 4.4 | GATTATCATAATCATAACC | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2631 | -54 | 4.7 | TATAACGATAATAATTCTC |
| -48 | 4.6 | GATAATAATTCTCACTATG | ||
|
Position: -98
Score: 4.9 Sequence: GGCATTGATAATCATTTTC
Position: -92
Score: 5.2 Sequence: GATAATCATTTTCAATATC
Locus tag: YintA_01002134
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| YintA_01002134 | -98 | 4.9 | GGCATTGATAATCATTTTC | |
| -92 | 5.2 | GATAATCATTTTCAATATC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sodA | ||||
| Ortholog function: manganese/iron superoxide dismutase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3908 | -99 | 4.7 | GGCATTGATAATCATTTTC |
| -93 | 5 | GATAATCATTTTCAATATC | ||
| Salmonella typhimurium LT2 | STM4055 | -99 | 4.7 | GGCATTGATAATCATTTTC |
| -93 | 5 | GATAATCATTTTCAATATC | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03093 | -88 | 4.3 | GGCATTGATAAGCATTTTC |
| -82 | 4.4 | GATAAGCATTTTCAATATC | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04217 | -88 | 4.3 | GGCATTGATAAGCATTTTC |
| -82 | 4 | GATAAGCATTTTCAATACC | ||
| Enterobacter sp. 638 | Ent638_4063 | -100 | 4.7 | GGCATTGATAATCATTTTC |
| -94 | 5 | GATAATCATTTTCAATATC | ||
| Yersinia pestis KIM | y4080 | -104 | 4.4 | AGGTTTGATAATCATTTTC |
| -98 | 5 | GATAATCATTTTCAATATC | ||
| Serratia proteamaculans 568 | Spro_0081 | -105 | 4.7 | GGCATTGATAATCATTTTC |
| -99 | 5 | GATAATCATTTTCAATATC | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0092 | -105 | 4.9 | AATAATCATTTTCAATATC |
| Proteus mirabilis HI4320 | PMI3036 | -95 | 4.6 | GGATATGATAATGATTTTC |
| -89 | 5.2 | GATAATGATTTTCATTAAC | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0075 | -102 | 4.3 | GGTATTGATAAGCATTTCC |
|
Position: -35
Score: 5.3 Sequence: GATATTGGTTATCATTATC
Locus tag: YintA_01002201
|
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| YintA_01002201 | -35 | 5.3 | GATATTGGTTATCATTATC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yjjZ | ||||
| Ortholog function: putative membrane protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4567 | -60 | 4.4 | GCAAATGATAAAAATTATC |
| -37 | 5.2 | GATATTGGTTATCATTATC | ||
| Salmonella typhimurium LT2 | STM4552 | -37 | 5.2 | GATATTGGTTATCATTATC |
| -31 | 4.2 | GGTTATCATTATCAATTCC | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03427 | 2 | 4.9 | GCTATTGGTTATCATTATC |
| 8 | 4.1 | GGTTATCATTATCGGTATC | ||
| Enterobacter sp. 638 | Ent638_0529 | -37 | 5.2 | GATATTGGTTATCATTATC |
| -31 | 4 | GGTTATCATTATCATATTG | ||
| Erwinia amylovora ATCC 49946 | EAM_0565 | -70 | 4.3 | CAAAGTGATAATGATTAAC |
| -64 | 4.3 | GATAATGATTAACATATGC | ||
| -47 | 4.9 | GCTATTGGTAATCATTATC | ||
| -41 | 4.8 | GGTAATCATTATCATTTAT | ||
| Yersinia pestis KIM | y3754 | -4 | 4.9 | GATATTGGTTATGATTATC |
| 2 | 5.2 | GGTTATGATTATCATTATC | ||
| Serratia proteamaculans 568 | Spro_0646 | -39 | 4.7 | GATATTAGTTCTCATTATC |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0738 | -89 | 5 | GATATTAGTTATCATTATC |
| -83 | 4.5 | AGTTATCATTATCATTTTT | ||
| Proteus mirabilis HI4320 | PMI2497 | -27 | 5.3 | AATAATGAAAATCATTATC |
| -21 | 5.2 | GAAAATCATTATCATTAAC | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4253 | -92 | 5.2 | GATATTGGTAATCATTATC |
| -86 | 4.7 | GGTAATCATTATCATTTGT | ||
|
Position: -338
Score: 5.1 Sequence: GCTAATGATAATTACTATC
Locus tag: YintA_01002416
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| YintA_01002416 | -338 | 5.1 | GCTAATGATAATTACTATC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: adhE | ||||
| Ortholog function: iron-containing aldehyde-alcohol dehydrogenase | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02199 | -332 | 4 | TTTAATGCTAATCGTTTTT |
| -326 | 3.2 | GCTAATCGTTTTTTTAATT | ||
| Yersinia pestis KIM | y2023 | -339 | 5 | GATAATGACAATCATTCTC |
| -333 | 3.7 | GAcAATcATtcTCAaaAaa | ||
| Serratia proteamaculans 568 | Spro_2704 | -330 | 3.9 | GTTATCAAGAATGATTCTC |
| -324 | 4.2 | AAGAATGATTCTCAAAAAC | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2326 | -368 | 4.5 | CCTAATGATATTGATTATC |
| -362 | 5.2 | GATATTGATTATCAATATC | ||
| Edwardsiella tarda EIB202 | ETAE_1508 | -317 | 4 | aAagATGAgAtTCATTcTC |
| -311 | 4.3 | GAgAtTcATtcTCATTAaa | ||
| Proteus mirabilis HI4320 | PMI1486 | -300 | 4.5 | GTAATTAATTATCATTACC |
| -294 | 4 | AATTATCATTACCATTTAA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2496 | -191 | 3.9 | ccaAtcaATAATaATTATC |
| -185 | 4.4 | AATAATAATTATCACTGAC | ||
|
Position: -93
Score: 5.1 Sequence: AATAATATTTATCATTATC
Locus tag: YintA_01002779
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| YintA_01002779 | -93 | 5.1 | AATAATATTTATCATTATC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Spro_0923 | ||||
| Ortholog function: major facilitator superfamily MFS_1 | ||||
| Serratia proteamaculans 568 | Spro_0923 | -93 | 4.3 | AATAATATTTATTGTTATC |
|
Position: -63
Score: 4.9 Sequence: GATAATGATAAATATTATT
Position: -39
Score: 4.2 Sequence: AAGAATGATTCTCAATTGA
Locus tag: YintA_01002780
|
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| YintA_01002780 | -63 | 4.9 | GATAATGATAAATATTATT | |
| -39 | 4.2 | AAGAATGATTCTCAATTGA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: iucA2 | ||||
| Ortholog function: aerobactin synthetase (subunit alpha) | ||||
| Yersinia pestis KIM | y3380 | -63 | 4.8 | GATAATGATAACCACTATT |
| Yersinia pestis KIM | y3381 | -63 | 4.8 | GATAATGATAACCACTATT |
| Serratia proteamaculans 568 | Spro_0922 | -63 | 4.2 | GATAACAATAAATATTATT |
| -45 | 4.1 | TGATATAAGAATCATTCTC | ||
|
Position: -64
Score: 4.3 Sequence: GGTAATGCAAATCATTAGT
Position: -58
Score: 4 Sequence: GCAAATCATTAGTGTTAGC
Locus tag: YintA_01002788
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| YintA_01002788 | -64 | 4.3 | GGTAATGCAAATCATTAGT | |
| -58 | 4 | GCAAATCATTAGTGTTAGC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fatB | ||||
| Ortholog function: iron ABC transporter, substrate-binding protein | ||||
| Yersinia pestis KIM | y4043 | -26 | 4.8 | GGTAATAAAAATCATTAGC |
| -20 | 4.2 | AAAAATCATTAGCATTACT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2564 | -86 | 4.2 | GCGAATGATAATTAAATTC |
| -80 | 4.1 | GATAATTAAATTCTTTATT | ||
| Proteus mirabilis HI4320 | PMI2957 | -121 | 4.1 | GTGAATTAGTATCATTACT |
|
Position: -121
Score: 5 Sequence: TATAATGATAATAGTTATC
Locus tag: YintA_01003631
|
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| YintA_01003631 | -121 | 5 | TATAATGATAATAGTTATC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gpmA | ||||
| Ortholog function: phosphoglyceromutase 1 | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0755 | -47 | 5 | TATAATGAGAATTATTATC |
| -41 | 4.7 | GAGAATTATTATCATTAAA | ||
| Salmonella typhimurium LT2 | STM0772 | -47 | 5 | TATAATGAGAATTATTATC |
| -41 | 4.5 | GAGAATTATTATCATTACA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_02381 | -46 | 5 | TATAATGAGAATTATTATC |
| -40 | 4.5 | GAGAATTATTATCATTCAA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00768 | -96 | 4.6 | TATAATGAGAATAGTTATC |
| Enterobacter sp. 638 | Ent638_1246 | -164 | 4.7 | TATAATGAGAATTGTTATC |
| -158 | 4.1 | GAGAATTGTTATCATTCAA | ||
| Yersinia pestis KIM | y3048 | -103 | 5.3 | TATAATGATAATAATTATC |
| -97 | 4.6 | GATAATAATTATCATTGAA | ||
| Serratia proteamaculans 568 | Spro_1288 | -51 | 4.9 | TATAATGATTTTCGTTATC |
| Edwardsiella tarda EIB202 | ETAE_2569 | -49 | 4.6 | CATGATGATAATAATTATC |
| -43 | 5.3 | GATAATAATTATCATTATA | ||