Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of AllR regulog to Escherichia coli HS

Reference regulog properties
Source regulog: AllR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: IclR
Regulation mode: repressor
Biological process: Allantoin utilization
Effector: Allantoin
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Escherichia coli HS
Orthologous TF(s) EcHS_A0580
Regulated genes 3
Built upon 6 sites [see more]
Predicted regulatory interactions in Escherichia coli HS
Locus tag Position Score Sequence
Position: -124
Score: 6.6
Sequence: TTGGAATATTTTTCCAA
Locus tag: EcHS_A0578
EcHS_A0578 -124 6.6 TTGGAATATTTTTCCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: allS
Ortholog function: DNA-binding transcriptional activator of the allD operon
Escherichia coli str. K-12 substr. MG1655 b0504 -124 6.6 TTGGAATATTTTTCCAA
Salmonella typhimurium LT2 STM0514 -122 6.6 TTGGAATATTTTTCCAA
Position: -122
Score: 6.6
Sequence: TTGGAAAAATATTCCAA
Locus tag: EcHS_A0579
EcHS_A0579 -122 6.6 TTGGAAAAATATTCCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: allA
Ortholog function: ureidoglycolate hydrolase
Escherichia coli str. K-12 substr. MG1655 b0505 -122 6.6 TTGGAAAAATATTCCAA
Salmonella typhimurium LT2 STM0515 -121 6.6 TTGGAAAAATATTCCAA
Position: -37
Score: 6.7
Sequence: TTGGAAAAATTTTCCAA
Locus tag: EcHS_A0581
EcHS_A0581 -37 6.7 TTGGAAAAATTTTCCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gcl
Ortholog function: glyoxylate carboligase
Escherichia coli str. K-12 substr. MG1655 b0507 -37 6.7 TTGGAAAAATTTTCCAA
Salmonella typhimurium LT2 STM0517 -37 6.4 TTGGAAACTTTTTCCAA
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