Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of GntR regulog to Pectobacterium wasabiae WPP163

Reference regulog properties
Source regulog: GntR - Enterobacteriales  
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor
Biological process: Gluconate utilization
Effector: Gluconate
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Pectobacterium wasabiae WPP163
Orthologous TF(s) Pecwa_2770
Regulated genes 3
Built upon 61 sites [see more]
Predicted regulatory interactions in Pectobacterium wasabiae WPP163
Locus tag Position Score Sequence
Position: -239
Score: 5.5
Sequence: TCACGTTACCGGTATCATGA
Position: -225
Score: 5.6
Sequence: TCATGATACCGGTAACAAGT
Locus tag: Pecwa_2768
Pecwa_2768 -239 5.5 TCACGTTACCGGTATCATGA
-225 5.6 TCATGATACCGGTAACAAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gntT
Ortholog function: High-affinity H+/gluconate symporter
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1840 -239 5.5 TCACGTTACCGGTATCATGA
-225 5.6 TCATGATACCGGTAACAAGT
Position: -91
Score: 5.4
Sequence: ACTTGTTACCGGTATCATGA
Locus tag: Pecwa_2769
Pecwa_2769 -91 5.4 ACTTGTTACCGGTATCATGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gntK
Ortholog function: Thermoresistant gluconokinase (EC 2.7.1.12)
Yersinia pestis KIM y3876 -91 5.6 ATTTGTTACCGGTATCATGA
-77 5.5 TCATGATACCGGTAACATGG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4159 -77 5.3 ATATGATACGGGTAACATGT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1839 -91 5.4 ACTTGTTACCGGTATCATGA
-77 5.1 TCATGATACCGGTAACGTGA
Position: -346
Score: 5.9
Sequence: CATTGTTACCGGTATCATTT
Locus tag: Pecwa_2771
Pecwa_2771 -346 5.9 CATTGTTACCGGTATCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: edd
Ortholog function: 6-phosphogluconate dehydratase (EC 4.2.1.12)
Escherichia coli str. K-12 substr. MG1655 b1851 -212 6.3 TTATTTTACCGGTAACATGA
Salmonella typhimurium LT2 STM1885 -212 6.1 GTATTTTACCGGTAACATGA
Citrobacter koseri ATCC BAA-895 CKO_01115 -211 6.3 TTATTTTACCGGTAACATGA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02366 -211 6.3 TTATTTTACCGGTAACATGA
-2 5.4 CAATGTTACGGGTAACAAAT
Enterobacter sp. 638 Ent638_2420 -210 6.3 TTATTTTACCGGTAACATGA
Serratia proteamaculans 568 Spro_4499 -73 6.4 CAATGTTACCGATAACATGT
-59 5.5 ACATGTTACCGGTAACAAAC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1836 -359 5.9 CATTGTTACCGGTATCATTT
Proteus mirabilis HI4320 PMI2760 -111 5.1 GCTTGTTACCCGTAACAATG
-96 6.4 CAATGTTACCGGTAACAAGT