Propagation of NarP regulog to Pectobacterium wasabiae WPP163
| Source regulog: | NarP - Enterobacteriales |
| Regulator type: | Transcription factor |
| Regulator family: | LuxR |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrate and nitrite respiration |
| Effector: | Nitrate; Nitrite |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Pectobacterium wasabiae WPP163 |
| Orthologous TF(s) | Pecwa_2711 |
| Regulated genes | 19 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -289
Score: 4.2 Sequence: CACCCACAAATGGGTA
Locus tag: Pecwa_2284
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| Pecwa_2284 | -289 | 4.2 | CACCCACAAATGGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: adhE | ||||
| Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1241 | -215 | 4.7 | TACCCAGAAGTGAGTA |
| Salmonella typhimurium LT2 | STM1749 | -216 | 4.6 | TACTCAGAAGTGAGTA |
| Citrobacter koseri ATCC BAA-895 | CKO_01318 | -216 | 4.6 | TACTCAGAAGTGAGTA |
| Yersinia pestis KIM | y2023 | -260 | 4 | TACCTAAGAATAGTTA |
| Serratia proteamaculans 568 | Spro_2704 | -252 | 4 | TACCCAAGAGTAGTTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2326 | -289 | 4 | CACCCACAAATAGGTA |
| Edwardsiella tarda EIB202 | ETAE_1508 | -239 | 4.4 | TACCCAAGAATGAGTA |
|
Position: -56
Score: 4.8 Sequence: TACCTACTTAGAGGTA
Locus tag: Pecwa_2299
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| Pecwa_2299 | -56 | 4.8 | TACCTACTTAGAGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ompW | ||||
| Ortholog function: Outer membrane protein W precursor | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1256 | -55 | 4.5 | TACTCCAATGTAGGTA |
| Salmonella typhimurium LT2 | STM1732 | -55 | 4.7 | TACTTCATTGTGGGTA |
| Citrobacter koseri ATCC BAA-895 | CKO_01333 | -55 | 4.5 | TACTCCATTGTAGGTA |
| Yersinia pestis KIM | y2044 | -43 | 4.7 | TACTCATTTGTAGGTA |
| Serratia proteamaculans 568 | Spro_2674 | -28 | 4.5 | TACCCGTAAGTAGGTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2303 | -56 | 4.9 | TACCTACTTAGGGGTA |
| Edwardsiella tarda EIB202 | ETAE_1528 | -52 | 3.7 | TCACTCAATATGGTTA |
| Proteus mirabilis HI4320 | PMI1350 | -59 | 4.9 | TACTTATTAATGGGTA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2478 | -55 | 3.8 | TTCTAATATATGAGTA |
|
Position: -293
Score: 3.9 Sequence: TACCTCCAAATAGTTG
Position: -194
Score: 3.8 Sequence: TAGTTCTTTGGTGGTA
Locus tag: Pecwa_2564
|
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| Pecwa_2564 | -293 | 3.9 | TACCTCCAAATAGTTG | |
| -194 | 3.8 | TAGTTCTTTGGTGGTA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: narG | ||||
| Ortholog function: Respiratory nitrate reductase, alpha chain (EC 1.7.99.4) | ||||
| Serratia proteamaculans 568 | Spro_2883 | -193 | 3.8 | TGATACTTTAGGGGTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2031 | -194 | 4.3 | TAATTCTTTAGTGGTA |
| Proteus mirabilis HI4320 | PMI3571 | -237 | 4.8 | TACTCCAAAGGGAGTA |
|
Position: -246
Score: 4.7 Sequence: TACCTATTAGTAAGTA
Locus tag: Pecwa_2566
|
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| Pecwa_2566 | -246 | 4.7 | TACCTATTAGTAAGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: narK | ||||
| Ortholog function: Nitrate/nitrite antiporter | ||||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2030 | -246 | 4.8 | TACCCACTAGTGAGTA |
| -135 | 4.3 | TACTCATTAAGGAGTG | ||
|
Position: -154
Score: 4.2 Sequence: CACTCCTTAATGAGTA
Position: -43
Score: 4.6 Sequence: TACTTACTAATAGGTA
Locus tag: Pecwa_2567
|
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| Pecwa_2567 | -154 | 4.2 | CACTCCTTAATGAGTA | |
| -43 | 4.6 | TACTTACTAATAGGTA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: narX | ||||
| Ortholog function: Nitrate/nitrite sensor protein NarX (EC 2.7.3.-) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1222 | -228 | 4 | TTACCCATAGTGAGTA |
| -118 | 3.8 | TAACTCTTTCCGGGTA | ||
| Salmonella typhimurium LT2 | STM1766 | -230 | 4.3 | TTACCCTTAATGAGTA |
| -120 | 4.5 | TAACTCGTTATAGGTA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_01297 | -249 | 4.4 | TGCCCCTTAGTGAGTA |
| -139 | 4.5 | TAACTCGTTATAGGTA | ||
| Serratia proteamaculans 568 | Spro_2899 | -138 | 4.7 | TACTTCGTTAGAGGTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2029 | -217 | 4.2 | CACTCCTTAATGAGTA |
| -106 | 4.7 | TACTCACTAGTGGGTA | ||
| Proteus mirabilis HI4320 | PMI3569 | -73 | 4.5 | TACTCCCTTTGGAGTA |
|
Position: -111
Score: 4.4 Sequence: TACCTCTAAAGGGTGA
Locus tag: Pecwa_2713
|
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| Pecwa_2713 | -111 | 4.4 | TACCTCTAAAGGGTGA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: napF | ||||
| Ortholog function: Periplasmic nitrate reductase, ferredoxin-type protein NapF | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2208 | -129 | 4.6 | TACCCCGATCGGGGTA |
| Salmonella typhimurium LT2 | STM2261 | -132 | 4.8 | TACCTCTATCGGGGTA |
| Yersinia pestis KIM | y1442 | -158 | 4.3 | TACTCATTATTCGGTA |
| Serratia proteamaculans 568 | Spro_3488 | -322 | 4.7 | TACCCCTTTAGGGGGA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1898 | -111 | 4.4 | TACCTCTAAAGGGTGA |
| Edwardsiella tarda EIB202 | ETAE_1114 | -156 | 3.9 | TAACCCAAAAGAGGAA |
|
Position: -97
Score: 4.5 Sequence: TAACTCTTTATGGTTA
Locus tag: Pecwa_2728
|
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| Pecwa_2728 | -97 | 4.5 | TAACTCTTTATGGTTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ccmA | ||||
| Ortholog function: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2201 | -129 | 4.6 | TACCCCGATCGGGGTA |
| Salmonella typhimurium LT2 | STM2254 | -132 | 4.8 | TACCTCTATCGGGGTA |
| Citrobacter koseri ATCC BAA-895 | CKO_00574 | -612 | 4.6 | TACCCCAATCGGGGTA |
| Yersinia pestis KIM | y1567 | -112 | 4.8 | TACCTCTATAAGGGTA |
| Serratia proteamaculans 568 | Spro_3391 | -49 | 4.9 | TACCCCTATTGGAGTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1882 | -86 | 4.6 | TAACCCTTTAGGGTTA |
| Edwardsiella tarda EIB202 | ETAE_2461 | -64 | 4.4 | TACCCCGAATGAGTTA |
|
Position: -122
Score: 4.3 Sequence: TACCTCTTTGTAGGTG
Locus tag: Pecwa_3045
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| Pecwa_3045 | -122 | 4.3 | TACCTCTTTGTAGGTG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fdnG | ||||
| Ortholog function: Formate dehydrogenase N, alpha subunit (EC 1.2.1.2) | ||||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1408 | -122 | 4.3 | TACCCCTTTGTAGGTG |
|
Position: -81
Score: 4.8 Sequence: TACCTCGTAAGCGGTA
Locus tag: Pecwa_3584
|
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| Pecwa_3584 | -81 | 4.8 | TACCTCGTAAGCGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dnrN | ||||
| Ortholog function: Nitric oxide-dependent regulator DnrN | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4209 | -79 | 3.7 | TGCTACGTAAGGGTTA |
| Salmonella typhimurium LT2 | STM4399 | -78 | 3.9 | CACCCCGAAAGAGTTA |
| Citrobacter koseri ATCC BAA-895 | CKO_03623 | -78 | 3.9 | TGACCCGAAAGGGTTA |
| Yersinia pestis KIM | y0652 | -108 | 4.4 | TACCCACTTGGAGTTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3606 | -81 | 4.8 | TACCTCGTAAGCGGTA |
|
Position: -100
Score: 4.8 Sequence: TACCCACAAAGAAGTA
Locus tag: Pecwa_4046
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| Pecwa_4046 | -100 | 4.8 | TACCCACAAAGAAGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nirB | ||||
| Ortholog function: Nitrite reductase large subunit (EC 1.7.1.4) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3365 | -101 | 5.1 | TACCCATTAAGGAGTA |
| Salmonella typhimurium LT2 | STM3474 | -101 | 5 | TACCCATTAAGAGGTA |
| Citrobacter koseri ATCC BAA-895 | CKO_04789 | -101 | 5.2 | TACCTCTTAAGGAGTA |
| Yersinia pestis KIM | y3945 | -100 | 4.5 | TACCACCTTAGAGGTA |
| Serratia proteamaculans 568 | Spro_4595 | -197 | 4.5 | TACTCCCGAATGGGTA |
| -101 | 4.5 | TACCACATTAGAGGTA | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4079 | -100 | 4.8 | TACCCACAAAGAAGTA |
| Proteus mirabilis HI4320 | PMI1479 | -134 | 4.1 | TACTACTTTGGTAGTA |
|
Position: -33
Score: 4.3 Sequence: TACCTCTGAAAAGGTA
Locus tag: Pecwa_4540
|
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| Pecwa_4540 | -33 | 4.3 | TACCTCTGAAAAGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: atpI | ||||
| Ortholog function: ATP synthase maturation | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3739 | -31 | 4.6 | TACCTCGAAGGGAGCA |
| Salmonella typhimurium LT2 | STM3872 | -30 | 4.5 | TACCTCGAAGTGAGCA |
| Citrobacter koseri ATCC BAA-895 | CKO_00079 | -30 | 4.6 | TACCTCGAAGGGAGCA |
| Serratia proteamaculans 568 | Spro_0001 | -33 | 4.6 | TACCTCCTCAGGGGTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4519 | -33 | 4.3 | TACCTCTGAAAAGGTA |
| Edwardsiella tarda EIB202 | ETAE_3526 | -156 | 4.4 | TACCTCCTGGGGGGTA |