Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of UxuR regulog to Pectobacterium wasabiae WPP163

Reference regulog properties
Source regulog: UxuR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Glucuronate utilization
Effector: Glucuronate
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Pectobacterium wasabiae WPP163
Orthologous TF(s) Pecwa_3324
Regulated genes 4
Built upon 44 sites [see more]
Predicted regulatory interactions in Pectobacterium wasabiae WPP163
Locus tag Position Score Sequence
Position: -98
Score: 4.5
Sequence: TAAGTGGTATAACAAATC
Locus tag: Pecwa_0744
Pecwa_0744 -98 4.5 TAAGTGGTATAACAAATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: exuR
Ortholog function: exu regulon transcriptional regulator
Escherichia coli str. K-12 substr. MG1655 b3094 -47 4.7 AAAGTGGTATAACAAATA
Yersinia pestis KIM y3602 -105 4.5 TAAGTGGTATAACAAATC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0643 -98 4.5 TAAGTGGTATAACAAATC
Edwardsiella tarda EIB202 ETAE_0434 -68 4.2 AAAGTGGTATAACAACTC
Position: -162
Score: 5.9
Sequence: AATTTGGTAAACCAATTT
Locus tag: Pecwa_2627
Pecwa_2627 -162 5.9 AATTTGGTAAACCAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lfaT
Ortholog function: Putative MFS superfamily hexuronate transporter
Yersinia pestis KIM y3232 -217 5.2 ATTTTGGTGAACCAATAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1967 -162 5.9 AATTTGGTAAACCAATTT
Position: -176
Score: 6
Sequence: AAATTGGTTTACCAAATT
Locus tag: Pecwa_2628
Pecwa_2628 -176 6 AAATTGGTTTACCAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lfaR
Ortholog function: periplasmic binding protein/LacI transcriptional regulator
Yersinia pestis KIM y3231 -194 5.4 ATATTGGTTCACCAAAAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1966 -176 6 AAATTGGTTTACCAAATT
Position: -126
Score: 5.2
Sequence: TAATTGGTCAATCAATTT
Locus tag: Pecwa_3323
Pecwa_3323 -126 5.2 TAATTGGTCAATCAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: uxuA
Ortholog function: Mannonate dehydratase (EC 4.2.1.8)
Escherichia coli str. K-12 substr. MG1655 b4322 -180 5.4 GATGTGGTTAACCAATTT
Salmonella typhimurium LT2 STM3135 -336 5.6 AAATTGGTTGACCAATCA
-149 5.2 GATTTGGTTAGCCAATTT
Yersinia pestis KIM y2902 -510 4.5 AAgTTGtTagACCAgTTT
-352 4 AAATTGGTaAgtCcAaTa
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1093 -109 5.2 TAATTGGTCAATCAATTT
Photorhabdus luminescens subsp. laumondii TTO1 plu0170 -77 5.7 TTTTTGGTTGACCAATTT
© 2009-2020 RegPrecise