Propagation of NtrC regulog to Escherichia coli E24377A

Reference regulog properties
Source regulog:	NtrC - Enterobacteriales
Regulator type:	Transcription factor
Regulator family:	Fis
Regulation mode:	activator (repressor)
Biological process:	Nitrogen assimilation
Effector:	Phosphorylated NtrB, signal histidine kinase
Phylum:	Proteobacteria/gamma
Propagated regulon:
Target genome	Escherichia coli E24377A
Orthologous TF(s)	EcE24377A_4390
Regulated genes	9

Built upon 130 sites [see more]

Predicted regulatory interactions in *Escherichia coli E24377A*
	Locus tag	Position	Score	Sequence
Position: -137 Score: 5.2 Sequence: TGCACTGTCATAGTGCG Locus tag: EcE24377A_0486
	EcE24377A_0486	-137	5.2	TGCACTGTCATAGTGCG
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnK
Ortholog function: nitrogen regulatory protein P-II
Escherichia coli str. K-12 substr. MG1655	b0450	-137	5.2	TGCACTGTCATAGTGCG
Salmonella typhimurium LT2	STM0462	-177	5.2	TGCACCGTCGTGGTGCG
Citrobacter koseri ATCC BAA-895	CKO_02708	-147	5.3	TGCACCGTTATAGTGCG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00413	-181	5.3	TGCACCGTTGTGGTGCA
Enterobacter sp. 638	Ent638_0918	-160	5.3	TGCACTGTCATGGTGCG
Erwinia amylovora ATCC 49946	EAM_1004	-209	4.7	TGCATCATTTTAGTGCG
		-189	5.1	TGAACTATTTTGGTGCA
Yersinia pestis KIM	y1041	-191	5.8	TGCACCAACTTGGTGCG
Serratia proteamaculans 568	Spro_1109	-192	5.3	CGCACCAAAGTAGTGCG
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1160	-244	5.8	TGCACCAACTTAGTGCA
Edwardsiella tarda EIB202	ETAE_1003	-152	5.2	TGCACCGTTTTGGTGCT
Proteus mirabilis HI4320	PMI0126	-114	4.7	TGCACTAAGTTAGTGAG
Photorhabdus luminescens subsp. laumondii TTO1	plu3857	-173	5.5	TGCACTAATTCGGTGCA

Position: -87 Score: 4.4 Sequence: TGCACAATAAAGTTGCA Locus tag: EcE24377A_0683
	EcE24377A_0683	-87	4.4	TGCACAATAAAGTTGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltI
Ortholog function: Glutamate-aspartate ABC transporter, substrate-binding component
Escherichia coli str. K-12 substr. MG1655	b0655	-87	4.4	TGCACAATAAAGTTGCA

Position: -173 Score: 4.9 Sequence: CGCACCAGATTGGTGCC Position: -160 Score: 5.5 Sequence: TGCCCCAGAATGGTGCA Locus tag: EcE24377A_0880
	EcE24377A_0880	-173	4.9	CGCACCAGATTGGTGCC
		-160	5.5	TGCCCCAGAATGGTGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnH
Ortholog function: Glutamine ABC transporter, substrate-binding component
Escherichia coli str. K-12 substr. MG1655	b0811	-173	4.9	CGCACCAGATTGGTGCC
		-160	5.5	TGCCCCAGAATGGTGCA
Citrobacter koseri ATCC BAA-895	CKO_02311	-172	5.1	TGCACTAAATCAGTGCC
		-159	5.6	TGCCCCAAAACGGTGCA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00840	-172	4.2	CGCACCAAAATGACGCC
		-159	5	CGCCCCACCATGGTGCA

Position: -47 Score: 5.4 Sequence: CGCACCATCATGGTGCG Locus tag: EcE24377A_0927
	EcE24377A_0927	-47	5.4	CGCACCATCATGGTGCG
Supported by regulated orthologs from reference regulons
Ortholog gene name: potG
Ortholog function: Putrescine ABC transporter, ATP-binding component
Escherichia coli str. K-12 substr. MG1655	b0855	-47	5.4	CGCACCATTATGGTGCG
Citrobacter koseri ATCC BAA-895	CKO_02252	-53	4.6	CGCACTTTTATGGTGCG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00886	-39	5.2	AGCACCAGGATGGTGCA
Enterobacter sp. 638	Ent638_1369	-53	4.8	CGCACCGAAAGGGTGCG

Position: -134 Score: 3.9 Sequence: TGCACTCTCATCGCGCA Locus tag: EcE24377A_1130
	EcE24377A_1130	-134	3.9	TGCACTCTCATCGCGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rutA
Ortholog function: Pyrimidine oxygenase
Escherichia coli str. K-12 substr. MG1655	b1012	-168	3.9	TGCACTCTCATCGCGCA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01038	-223	4.1	TGCACCCTGATTGCGCA
		-189	3.8	TGCACTGATTTTGACCA
Enterobacter sp. 638	Ent638_1525	-227	4.1	TGCACCGCCATCGCGCA
Serratia proteamaculans 568	Spro_1823	-230	3.9	TGCACCTTTAATGAGCA

Position: -148 Score: 4.1 Sequence: TGCACCAAAACTGCACT Position: -127 Score: 3.5 Sequence: TGCACAAATGTTGATCA Locus tag: EcE24377A_1677
	EcE24377A_1677	-148	4.1	TGCACCAAAACTGCACT
		-127	3.5	TGCACAAATGTTGATCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ddpX
Ortholog function: D-alanyl-D-alanine dipeptidase (EC 3.4.13.-)
Escherichia coli str. K-12 substr. MG1655	b1488	-148	4.1	TGCACCAAAACTGCACT
		-127	3.5	TGCACAAATGTTGATCA
Citrobacter koseri ATCC BAA-895	CKO_01525	-151	3.5	TGCACAAATGTTGATCA

Position: -205 Score: 5.1 Sequence: TGAACCATCGTGGTGCA Locus tag: EcE24377A_2270
	EcE24377A_2270	-205	5.1	TGAACCATCGTGGTGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nac
Ortholog function: Nitrogen assimilation transcriptional regulator, LysR family
Escherichia coli str. K-12 substr. MG1655	b1988	-205	5.1	TGAACCATCGTGGTGCA
Citrobacter koseri ATCC BAA-895	CKO_00955	-206	4.8	TGCGCCATTCTGGTGCA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02437	-206	5	TGCACCGTTGTAGTGCG
Enterobacter sp. 638	Ent638_2564	-206	4.8	TGCACGATTCTGGTGCA
Erwinia amylovora ATCC 49946	EAM_2112	-228	4.3	TGCACCATTAACGAGCA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2888	-197	4.5	TGCTTTAAGATGGTGCA

Position: -162 Score: 5.5 Sequence: TGCACTATCGTGGTGCA Locus tag: EcE24377A_2603
	EcE24377A_2603	-162	5.5	TGCACTATCGTGGTGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hisJ
Ortholog function: Histidine ABC transporter, substrate-binding component
Escherichia coli str. K-12 substr. MG1655	b2309	-162	5.5	TGCACTATCGTGGTGCA
Salmonella typhimurium LT2	STM2354	-211	4.4	GGAACTATCACGGTGCA
		-182	5.1	TGCACCTTTTTGGTGCA
Citrobacter koseri ATCC BAA-895	CKO_00478	-212	4.3	TTAACCATCACGGTGCG
		-183	5.8	TGCACCATCATGGTGCG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02699	-215	5.3	TGCCCCAAAAGGGTGCA
		-185	4	TGGATCATTTCAGTGCA
Enterobacter sp. 638	Ent638_2858	-212	4.1	TTCCCTGTCACGGTGCG
		-182	5.2	TGACCCAATATGGTGCA
Yersinia pestis KIM	y1607	-123	4.8	AGCACTGAAATGGGGCA
Serratia proteamaculans 568	Spro_3326	-265	4.4	CGCACTGAATTAGGGCG
		-243	4.3	TGCACCATAATGATCCC

Position: -38 Score: 6.1 Sequence: TGCACTAAAATGGTGCA Locus tag: EcE24377A_4391
	EcE24377A_4391	-38	6.1	TGCACTAAAATGGTGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ntrB
Ortholog function: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Escherichia coli str. K-12 substr. MG1655	b3869	-38	6.1	TGCACTAAAATGGTGCA
Salmonella typhimurium LT2	STM4006	-39	6.1	TGCACTAAAATGGTGCA
Citrobacter koseri ATCC BAA-895	CKO_03143	-40	6	TGCACTAAATTGGTGCA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04177	-39	6	TGCACTAAATTGGTGCA
Enterobacter sp. 638	Ent638_4097	-38	5.8	TGCACTAAATTAGTGCA
Erwinia amylovora ATCC 49946	EAM_0031	-40	5.7	TGCACTAAGTTGGTGCA
Yersinia pestis KIM	y3805	-29	5.3	TGCACCGAAACTGTGCA
Serratia proteamaculans 568	Spro_4882	-29	5.8	TGCACTAAAAAGGTGCA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0028	-29	5.2	TGCACCATGCTGGTGCG
Edwardsiella tarda EIB202	ETAE_3494	-28	6.1	TGCACCAAAATAGTGCA
Proteus mirabilis HI4320	PMI2883	-32	6.1	TGCACTAAAATGGTGCA
Photorhabdus luminescens subsp. laumondii TTO1	plu0236	-26	5.7	TGCACCAAAAAAGTGCA

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of NtrC regulog to Escherichia coli E24377A

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --