Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of RcnR regulog to Citrobacter rodentium ICC168

Reference regulog properties
Source regulog: RcnR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: CsoR
Regulation mode: repressor
Biological process: Cobalt resistance; Nickel resistance
Effector: Nickel ion, (Ni2+); Cobalt ion, (Co2+)
Phylum: Gammaproteobacteria
Propagated regulon:
Target genome Citrobacter rodentium ICC168
Orthologous TF(s) ROD_29021
Regulated genes 2
Built upon 16 sites [see more]
Predicted regulatory interactions in Citrobacter rodentium ICC168
Locus tag Position Score Sequence
Position: -84
Score: 5.4
Sequence: TACTCCCCCCCAGTA
Locus tag: ROD_29021
ROD_29021 -84 5.4 TACTCCCCCCCAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rcnR
Ortholog function: Cobalt and nickel resistance transcriptional regulator RcnR
Citrobacter koseri ATCC BAA-895 CKO_04229 -84 5.4 TACTCCCCCCCAGTA
-64 5.2 TACTACCCCCCAGTA
Escherichia coli str. K-12 substr. MG1655 b2105 -83 5.4 TACTCCCCCCCAGTA
-63 5.2 TACTACCCCCCAGTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00424 -61 5.4 TACTCCCCCCCAGTA
-40 5.2 TACTACCCCCCAGTA
Salmonella typhimurium LT2 STM3023 -84 5.4 TACTCCCCCCCAGTA
-64 5.2 TACTACCCCCCAGTA
Position: -51
Score: 5.4
Sequence: TACTGGGGGGGAGTA
Locus tag: ROD_29031
ROD_29031 -51 5.4 TACTGGGGGGGAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rcnA
Ortholog function: Nickel/cobalt efflux transporter RcnA
Escherichia coli str. K-12 substr. MG1655 b2106 -72 5.2 TACTGGGGGGTAGTA
-52 5.4 TACTGGGGGGGAGTA