Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of LeuO regulog to Citrobacter rodentium ICC168

Reference regulog properties
Source regulog: LeuO - Enterobacteriales
Regulator type: Transcription factor
Regulator family: LysR
Regulation mode: activator
Biological process:
Effector: Guanosine 3',5'-bis(diphosphate)
Phylum: Gammaproteobacteria
Propagated regulon:
Target genome Citrobacter rodentium ICC168
Orthologous TF(s) ROD_00831
Regulated genes 3
Built upon 21 sites [see more]
Predicted regulatory interactions in Citrobacter rodentium ICC168
Locus tag Position Score Sequence
Position: -264
Score: 3.4
Sequence: ATTCATAAAATGTAT
Position: -241
Score: 4.5
Sequence: ATTTGTCCTGGTTAT
Position: -163
Score: 3.5
Sequence: TCTGGTGTTTTTTAT
Position: -150
Score: 3.8
Sequence: ATTGGTATTTTGTTT
Position: -96
Score: 3.5
Sequence: TTTCTTATTTTATAT
Position: -67
Score: 3.4
Sequence: ATTTTCTGAGATTAT
Locus tag: ROD_00831
ROD_00831 -264 3.4 ATTCATAAAATGTAT
-241 4.5 ATTTGTCCTGGTTAT
-163 3.5 TCTGGTGTTTTTTAT
-150 3.8 ATTGGTATTTTGTTT
-96 3.5 TTTCTTATTTTATAT
-67 3.4 ATTTTCTGAGATTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: leuO
Ortholog function: Dual transcriptional regulator LeuO, LysR family
Citrobacter koseri ATCC BAA-895 CKO_03302 -241 3.5 ATTCGCCACGCTTAT
Edwardsiella tarda EIB202 ETAE_0623 -246 4.7 ATTGCCCTTAATTAT
Enterobacter sp. 638 Ent638_0623 -229 4.6 ATTCATTGGATTTAT
Escherichia coli str. K-12 substr. MG1655 b0076 -325 4.1 ATTAATGTTAAGAAT
-243 4.9 ATTCGCGGTAGTTAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00081 -291 4.2 ATTTTTATGGATTAT
Photorhabdus luminescens subsp. laumondii TTO1 plu3672 -223 4.2 ATTGGAATTATATAT
-112 4.7 ATTGATCTCGTTAAT
Proteus mirabilis HI4320 PMI2082 -289 3.8 ATTTTGTTTTATTAT
Salmonella typhimurium LT2 STM0115 -263 3.9 ATTCACTTGGTGTAT
-240 4.4 ATTCGCCATAGTTAT
Serratia proteamaculans 568 Spro_0746 -400 3.6 ATTCTTGATATCAAT
Yersinia pestis KIM y3642 -413 4.2 ATTATTGGTGATTAT
-210 5 ATTGGCGTTATTAAT
Position: -31
Score: 4.2
Sequence: ATTCATATCAGAAAT
Locus tag: ROD_30451
ROD_30451 -31 4.2 ATTCATATCAGAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cas3
Ortholog function: CRISPR-associated helicase
Photorhabdus luminescens subsp. laumondii TTO1 plu0745 -242 4.4 ATTATCTTTATTTAT
Salmonella typhimurium LT2 STM2944 -165 4.2 ATTTATAATAATTAT
-152 4 ATTCGTGGGGTAAAT
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