Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of ExuR regulog to Citrobacter rodentium ICC168

Reference regulog properties
Source regulog: ExuR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Galacturonate utilization
Effector: Galacturonate
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Citrobacter rodentium ICC168
Orthologous TF(s) ROD_47931
Regulated genes 5
Built upon 48 sites [see more]
Predicted regulatory interactions in Citrobacter rodentium ICC168
Locus tag Position Score Sequence
Position: -161
Score: 4.8
Sequence: AAAGTTATATGACAACAAA
Locus tag: ROD_23021
ROD_23021 -161 4.8 AAAGTTATATGACAACAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: uxuA
Ortholog function: Mannonate dehydratase (EC 4.2.1.8)
Citrobacter koseri ATCC BAA-895 CKO_00609 -31 5.3 AATTTGGTATAACAACTTG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02604 -34 5.5 TTATTGGTATAACAACTTT
Enterobacter sp. 638 Ent638_2767 -32 5.7 ATATTGGTATAACAACTTT
Yersinia pestis KIM y2902 -240 5.2 AAATCGGTATAACAACATT
Serratia proteamaculans 568 Spro_3238 -80 5 AATTTGGTATAACAAGATT
Edwardsiella tarda EIB202 ETAE_2289 -101 4.7 GATTTGGTATGACAGATTA
Position: -191
Score: 3.7
Sequence: AAGTTGTTATACCAAAACA
Locus tag: ROD_23031
ROD_23031 -191 3.7 AAGTTGTTATACCAAAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: uxuB
Ortholog function: D-mannonate oxidoreductase (EC 1.1.1.57)
Citrobacter koseri ATCC BAA-895 CKO_00608 -191 4.4 AAGTTGTTATACCAAATTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02605 -193 3.7 AAAGTtGTtatACcAaTaa
Enterobacter sp. 638 Ent638_2768 -193 3.8 AAAGTtGTtatACcAaTaT
Yersinia pestis KIM y2903 -91 5.3 AAACTGGTCTAACAACTTT
Serratia proteamaculans 568 Spro_3239 -64 5.3 AAACTGGTCTGATAACTTC
Edwardsiella tarda EIB202 ETAE_2291 -89 4.7 CAAGTGGTCTAACACCTTT
Position: -71
Score: 6.2
Sequence: AAATTGGTGTGATAACTTT
Locus tag: ROD_47951
ROD_47951 -71 6.2 AAATTGGTGTGATAACTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: uxaC
Ortholog function: Uronate isomerase (EC 5.3.1.12)
Escherichia coli str. K-12 substr. MG1655 b3092 -71 6.2 AAATTGGTGTGATAACTTT
Citrobacter koseri ATCC BAA-895 CKO_04494 -8 6.2 AAATTGGTGTGATAACTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03520 -90 6.2 AAATTGGTGTGATAACTTT
Enterobacter sp. 638 Ent638_3546 -70 6.2 AAATTGGTGTGATAACTTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0645 -67 5.4 TAATTGGTGTGATATCTTT
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