Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of SdaR regulog to Citrobacter rodentium ICC168

Reference regulog properties
Source regulog: SdaR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: SdaR
Regulation mode: activator
Biological process: Glucarate utilization; Galactarate utilization
Effector: Glycerate
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Citrobacter rodentium ICC168
Orthologous TF(s) ROD_01661, ROD_39701
Regulated genes 5
Built upon 31 sites [see more]
Predicted regulatory interactions in Citrobacter rodentium ICC168
Locus tag Position Score Sequence
Position: -70
Score: 5.7
Sequence: CTTTGTGCATTTGCACAATG
Locus tag: ROD_01661
ROD_01661 -70 5.7 CTTTGTGCATTTGCACAATG
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdaR
Ortholog function: Glycerate-responsive transcriptional regulator for hexarate utilization, SdaR family
Escherichia coli str. K-12 substr. MG1655 b0162 -69 5.3 CTTTAGGCATTTGCACAATG
Salmonella typhimurium LT2 STM0210 -71 5.8 TTTTGTGCATTTGCACAATG
Citrobacter koseri ATCC BAA-895 CKO_03205 -17 5.1 GTTTGTGCAGATGCACAATG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00177 -17 5.4 CTTAGTGCAAATGCACAATG
Enterobacter sp. 638 Ent638_0702 -71 5.3 CTTTGTGCATTCGCACAATG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3300 -80 4.3 CTTTGTTAATTTGCACAATG
Position: -45
Score: 4
Sequence: AGATGGGTATATGCTTAACA
Locus tag: ROD_30281
ROD_30281 -45 4 AGATGGGTATATGCTTAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: garK
Ortholog function: Glycerate kinase (EC 2.7.1.31)
Salmonella typhimurium LT2 STM2959 -376 5.5 CTTTGTGCATATGCCCGCAA
Citrobacter koseri ATCC BAA-895 CKO_04140 -388 4.9 CATCAGGCATTTGCCCTAAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3572 -358 4.1 TGCTGGGCTATTGCCCAATG
Position: -251
Score: 4.8
Sequence: CATTGTGCAAACGCTCATTA
Position: -209
Score: 5.4
Sequence: TTTTGAGCATCTGCACATAA
Locus tag: ROD_47521
ROD_47521 -251 4.8 CATTGTGCAAACGCTCATTA
-209 5.4 TTTTGAGCATCTGCACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: garD
Ortholog function: D-galactarate dehydratase (EC 4.2.1.42)
Escherichia coli str. K-12 substr. MG1655 b3128 -250 4.5 CATTGTGCAAATGCTAATTT
-208 6 TTTTGAGCATATGCACATAA
Salmonella typhimurium LT2 STM3250 -276 4.8 CATTGTGCAAACGCTCATTA
-233 5.1 TTTTGAGCATACGCCCATGA
Citrobacter koseri ATCC BAA-895 CKO_04527 -223 5.6 TTTTGAGCATTTGCACAACG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03540 -206 4.7 AATTGTGCTTATGCCATAAG
Enterobacter sp. 638 Ent638_3570 -224 5.4 ATTTGAGCATATGCACAACC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3578 -316 4.6 GTTGGTGCACTTGCCCTATA
-140 4.2 CTTAGGTCAATTGCATAATG
Position: -323
Score: 5.4
Sequence: TTATGTGCAGATGCTCAAAA
Position: -281
Score: 4.8
Sequence: TAATGAGCGTTTGCACAATG
Locus tag: ROD_47531
ROD_47531 -323 5.4 TTATGTGCAGATGCTCAAAA
-281 4.8 TAATGAGCGTTTGCACAATG
Supported by regulated orthologs from reference regulons
Ortholog gene name: garL
Ortholog function: 2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20)
Escherichia coli str. K-12 substr. MG1655 b3126 -186 6 TTATGTGCATATGCTCAAAA
-144 4.5 AAATTAGCATTTGCACAATG
Salmonella typhimurium LT2 STM3249 -316 5.1 TCATGGGCGTATGCTCAAAA
-273 4.8 TAATGAGCGTTTGCACAATG
Citrobacter koseri ATCC BAA-895 CKO_04523 -203 5.6 CGTTGTGCAAATGCTCAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03538 -206 4.7 CTTATGGCATAAGCACAATT
Enterobacter sp. 638 Ent638_3568 -208 5.4 GGTTGTGCATATGCTCAAAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3574 -358 4.1 TGCTGGGCTATTGCCCAATG
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