Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of AlsR regulog to Citrobacter rodentium ICC168

Reference regulog properties
Source regulog: AlsR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: RpiR
Regulation mode: repressor
Biological process: Allose utilization
Effector: D-allose
Phylum: Gammaproteobacteria
Propagated regulon:
Target genome Citrobacter rodentium ICC168
Orthologous TF(s) ROD_34741
Regulated genes 2
Built upon 5 sites [see more]
Predicted regulatory interactions in Citrobacter rodentium ICC168
Locus tag Position Score Sequence
Position: -262
Score: 4.4
Sequence: GGTCTGTTCTACATACC
Locus tag: ROD_34741
ROD_34741 -262 4.4 GGTCTGTTCTACATACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: alsR
Ortholog function: Transcriptional regulator of D-allose utilization, RpiR family
Citrobacter koseri ATCC BAA-895 CKO_03784 -56 4.4 GGCCTGTTCTACACACC
-1 4.1 AATGAGTCAGTCAGAAT
Escherichia coli str. K-12 substr. MG1655 b4089 -264 5.3 GATCTGTTTTACAGAGT
Position: -102
Score: 4.4
Sequence: GGTATGTAGAACAGACC
Locus tag: ROD_34751
ROD_34751 -102 4.4 GGTATGTAGAACAGACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: rpiB
Ortholog function: D-allose-6-phosphate isomerase (EC 5.3.1.-) / Ribose 5-phosphate isomerase B (EC 5.3.1.6)
Citrobacter koseri ATCC BAA-895 CKO_03782 -106 4.4 GGTGTGTAGAACAGGCC
Escherichia coli str. K-12 substr. MG1655 b4090 -111 5.3 ACTCTGTAAAACAGATC
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