Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of TrpR regulog to Citrobacter rodentium ICC168

Reference regulog properties
Source regulog: TrpR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: TrpR
Regulation mode: repressor
Biological process: Tryptophan biosynthesis
Effector: Tryptophan
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Citrobacter rodentium ICC168
Orthologous TF(s) ROD_50801
Regulated genes 4
Built upon 44 sites [see more]
Predicted regulatory interactions in Citrobacter rodentium ICC168
Locus tag Position Score Sequence
Position: -136
Score: 5.7
Sequence: TGTACTAGTTTAGTGGTATG
Locus tag: ROD_04321
ROD_04321 -136 5.7 TGTACTAGTTTAGTGGTATG
Supported by regulated orthologs from reference regulons
Ortholog gene name: aroL
Ortholog function: Shikimate kinase III (EC 2.7.1.71)
Escherichia coli str. K-12 substr. MG1655 b0388 -79 5.6 TGTACTAGTTTGATGGTATG
Salmonella typhimurium LT2 STM0388 -79 5.1 TGTACTAGTTAGATGATATG
Citrobacter koseri ATCC BAA-895 CKO_02783 -136 5.4 TGTACTAGTTTGGTGGTATG
Enterobacter sp. 638 Ent638_0859 -80 5.6 CGTACTAGTTTAATGGTATT
Position: -156
Score: 4.8
Sequence: TAAACTAGTTCAATGGTTCG
Locus tag: ROD_13511
ROD_13511 -156 4.8 TAAACTAGTTCAATGGTTCG
Supported by regulated orthologs from reference regulons
Ortholog gene name: aroH
Ortholog function: 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (EC 2.5.1.54)
Escherichia coli str. K-12 substr. MG1655 b1704 -164 5.3 TGTACTAGAGAACTAGTGCA
Salmonella typhimurium LT2 STM1347 -163 4.9 TGTACTAGCAAACTAGTTTA
Citrobacter koseri ATCC BAA-895 CKO_01728 -173 4.5 TGTACTAACAAACTAGTGCA
-165 4.5 CAAACTAGTGCAAGAGTTCA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02162 -162 4.9 TGTACTAATACACTAGTACA
Enterobacter sp. 638 Ent638_1743 -159 5 TGTACTAATATGCTAGTACA
Edwardsiella tarda EIB202 ETAE_1792 -135 5 TGTACTAGTAAGAAAGTACA
Position: -156
Score: 5.9
Sequence: TGTACTCGTGTACTGGTACG
Locus tag: ROD_46711
ROD_46711 -156 5.9 TGTACTCGTGTACTGGTACG
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtr
Ortholog function: Tryptophan-specific transport protein
Escherichia coli str. K-12 substr. MG1655 b3161 -72 5.9 TGTACTCGTGTACTGGTACA
Salmonella typhimurium LT2 STM3279 -72 5.9 TGTACTCGTGTACTGGTACA
Citrobacter koseri ATCC BAA-895 CKO_04558 -72 5.4 TGTACTCGCGTACTGGTACA
Enterobacter sp. 638 Ent638_3598 -71 5.4 TGTACTCCTGTACTGGTACA
Position: -34
Score: 5.7
Sequence: TGTACTCGTGTAAGAGTACA
Locus tag: ROD_50801
ROD_50801 -34 5.7 TGTACTCGTGTAAGAGTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: trpR
Ortholog function: Trp operon repressor
Escherichia coli str. K-12 substr. MG1655 b4393 -66 5.3 CGTACTCTTTAGCGAGTACA
Salmonella typhimurium LT2 STM4583 -34 5.6 TGTACTCGTGTAACAGTACA
Citrobacter koseri ATCC BAA-895 CKO_03393 -97 6 CGTACTCGTTAAAGAGTACA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04848 -65 5.7 TGTACTCGTTGAAGAGTACA
Enterobacter sp. 638 Ent638_0554 3 5.5 TGTACTcGTcAAagAGTACA
Erwinia amylovora ATCC 49946 EAM_0634 -33 6.2 TGTACTAGTTAAATAGTATG
Yersinia pestis KIM y3726 -24 6.1 TGTACTAGTTAAATAGTACT
Serratia proteamaculans 568 Spro_0676 -30 6.2 TGTACTAGTTAAATAGTATG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3899 -30 6.2 CGTACTAGTTAAATAGTATG
Edwardsiella tarda EIB202 ETAE_0543 -44 5.6 TGTACTCGTTGAATAGTTCA
Proteus mirabilis HI4320 PMI3714 -39 5.2 TGTACTAGTTTATGAGTGTG
Photorhabdus luminescens subsp. laumondii TTO1 plu0557 -34 6.2 TGTACTAGTTAAATAGTATG
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