Propagation of Crp regulog to Photorhabdus asymbiotica
| Source regulog: | Crp - Enterobacteriales |
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | activator (repressor) |
| Biological process: | Carbon catabolism |
| Effector: | Cyclic 3',5'-AMP |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Photorhabdus asymbiotica |
| Orthologous TF(s) | PAU_00306 |
| Regulated genes | 167 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -9
Score: 4 Sequence: TATTGTGCTGTGAATCTTAATG
Locus tag: PAU_00040
|
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| PAU_00040 | -9 | 4 | TATTGTGCTGTGAATCTTAATG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: atpF | ||||
| Ortholog function: ATP synthase subunit B | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3736 | -263 | 4.8 | ATATGTGATCTGAAGCACGCTT |
| Salmonella typhimurium LT2 | STM3869 | -262 | 4.6 | ATGTGTGATCTGGTGCACGCTT |
| -211 | 4.1 | TTTTGTACGATCGTTCACACTT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00076 | -262 | 4.7 | ATATGTGATCCGAAGCACGCTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04141 | -262 | 4.7 | TTATGTGATCTGATGCACGCTT |
| Enterobacter sp. 638 | Ent638_4128 | -261 | 4.8 | TTTTGTGATCTCGTGCACGCTT |
| Erwinia amylovora ATCC 49946 | EAM_3478 | -264 | 4.4 | ATTTGTGATCGTGGACACGCTT |
| Yersinia pestis KIM | y4139 | -263 | 5.4 | TTATGTGATGTATTTCACGTTT |
| Serratia proteamaculans 568 | Spro_0004 | -265 | 4.4 | TATTGTGAGCAACTACACGTTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4516 | -254 | 5 | TTATGTGAGTCACATCACAGAT |
| Edwardsiella tarda EIB202 | ETAE_3529 | -297 | 3.7 | AATCGTGAAAATATTTAAATTA |
| Proteus mirabilis HI4320 | PMI3060 | -259 | 5 | TTGTGTGTTCTAGATCACATTA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0044 | -265 | 5.7 | TTATGTGATTTAAATCACATTT |
|
Position: -263
Score: 5.4 Sequence: TTCTGTGATTTAAATCACATTT
Locus tag: PAU_00043
|
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| PAU_00043 | -263 | 5.4 | TTCTGTGATTTAAATCACATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: atpI | ||||
| Ortholog function: ATP synthase subunit I | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3739 | -263 | 4.8 | ATATGTGATCTGAAGCACGCTT |
| Salmonella typhimurium LT2 | STM3872 | -262 | 4.6 | ATGTGTGATCTGGTGCACGCTT |
| -211 | 4.1 | TTTTGTACGATCGTTCACACTT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00079 | -262 | 4.7 | ATATGTGATCCGAAGCACGCTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04144 | -262 | 4.7 | TTATGTGATCTGATGCACGCTT |
| Enterobacter sp. 638 | Ent638_4125 | -261 | 4.8 | TTTTGTGATCTCGTGCACGCTT |
| Erwinia amylovora ATCC 49946 | EAM_3481 | -264 | 4.4 | ATTTGTGATCGTGGACACGCTT |
| Yersinia pestis KIM | y4142 | -263 | 5.4 | TTATGTGATGTATTTCACGTTT |
| Serratia proteamaculans 568 | Spro_0001 | -265 | 4.4 | TATTGTGAGCAACTACACGTTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4519 | -254 | 5 | TTATGTGAGTCACATCACAGAT |
| Edwardsiella tarda EIB202 | ETAE_3526 | -297 | 3.7 | AATCGTGAAAATATTTAAATTA |
| Proteus mirabilis HI4320 | PMI3057 | -259 | 5 | TTGTGTGTTCTAGATCACATTA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0047 | -265 | 5.7 | TTATGTGATTTAAATCACATTT |
|
Position: -98
Score: 4.2 Sequence: TTGCGTGATCTTCCGCGCAAAA
Locus tag: PAU_00062
|
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| PAU_00062 | -98 | 4.2 | TTGCGTGATCTTCCGCGCAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: acs | ||||
| Ortholog function: acetyl-coenzyme A synthetase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4069 | -100 | 4.1 | TTGCGTGATCTGTCGCCCAAAT |
| Salmonella typhimurium LT2 | STM4275 | -100 | 4.1 | TTGCGTGATCTGTCGCCCAAAT |
| Citrobacter koseri ATCC BAA-895 | CKO_03816 | -101 | 4.3 | TTGCGTGATCTGCCGCGCAAAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04478 | -101 | 3.9 | TTGCGTGATCTGCCCCCCAATT |
| Enterobacter sp. 638 | Ent638_0276 | -101 | 4.1 | TTGCGTGATCTGTCGCCCAAAT |
| Yersinia pestis KIM | y0510 | -97 | 4.2 | ATACGTGATCTGCCGCCCAAAA |
| Serratia proteamaculans 568 | Spro_0297 | -97 | 4 | TTGCGTGATCTGCCGCCCAAAA |
| Proteus mirabilis HI4320 | PMI3037 | -97 | 4.5 | TTTCGTGATCTTATGCGCAAAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0074 | -98 | 4.2 | TTGCGTGATCTTCCGCGCAAAA |
|
Position: -234
Score: 3.7 Sequence: TTTTGCGCGGAAGATCACGCAA
Locus tag: PAU_00063
|
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| PAU_00063 | -234 | 3.7 | TTTTGCGCGGAAGATCACGCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sodA | ||||
| Ortholog function: Manganese superoxide dismutase (EC 1.15.1.1) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3908 | -161 | 3.8 | GTGGGTGATTTGCTTCACATCT |
| Citrobacter koseri ATCC BAA-895 | CKO_03093 | -150 | 4.4 | ACGGGTGATTTGGCTCACATAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04217 | -150 | 4 | TTAGTTGTTCTACATCACAAAA |
| Enterobacter sp. 638 | Ent638_4063 | -160 | 3.6 | CCGCGTGAGCAGACTCACAATT |
| Proteus mirabilis HI4320 | PMI3036 | -292 | 3.7 | TTTTGCGCATAAGATCACGAAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0075 | -297 | 3.7 | TTTTGCGCGGAAGATCACGCAA |
|
Position: -213
Score: 3.8 Sequence: ATTTTTAACATATTTTACAATA
Locus tag: PAU_00078
|
||||
| PAU_00078 | -213 | 3.8 | ATTTTTAACATATTTTACAATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nudE | ||||
| Ortholog function: ADP compounds hydrolase NudE (EC 3.6.1.-) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3397 | -53 | 3.7 | AAGCGTGTCCGATATCGCACAA |
| Citrobacter koseri ATCC BAA-895 | CKO_04820 | -54 | 4.1 | AACCGTGCTGTATATCGCACAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03768 | -54 | 4 | AAGCGTGTTGCGTATCGCACAA |
| Enterobacter sp. 638 | Ent638_3810 | -55 | 3.6 | AACCGTGCGTCATATCGCACAA |
| Yersinia pestis KIM | y3923 | -247 | 4.5 | CAATGTGATCAAGTTCTAATAT |
| Serratia proteamaculans 568 | Spro_4612 | -135 | 4.4 | CAATGTGATCAAGATCGGATTT |
| Edwardsiella tarda EIB202 | ETAE_3268 | -116 | 3.6 | AAATATGAGCATCTGCGCACAA |
|
Position: -182
Score: 3.7 Sequence: TATTGTAAAATATGTTAAAAAT
Locus tag: PAU_00079
|
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| PAU_00079 | -182 | 3.7 | TATTGTAAAATATGTTAAAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: igaA | ||||
| Ortholog function: IgaA: a membrane protein that prevents overactivation of the Rcs regulatory system | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3398 | -288 | 3.6 | TTGTGCGATATCGGACACGCTT |
| -123 | 3.8 | TACTGTGATGTGCTTAATGATG | ||
| Salmonella typhimurium LT2 | STM3495 | -238 | 3.6 | TTATGTAACGTAATAAAAATTA |
| Citrobacter koseri ATCC BAA-895 | CKO_04821 | -290 | 3.9 | TTGTGCGATATACAGCACGGTT |
| -238 | 3.7 | TTATGTAACGTAGTAAAAATTA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03769 | -282 | 3.8 | TTGTGCGATACGCAACACGCTT |
| Enterobacter sp. 638 | Ent638_3811 | -287 | 3.7 | TTGTGCGATATGACGCACGGTT |
| Yersinia pestis KIM | y3922 | -186 | 3.7 | TATTGTGACTGCGTTAGCTTTG |
|
Position: -83
Score: 3.8 Sequence: TTTTTTGATAGCAATCGCTGTT
Locus tag: PAU_00083
|
||||
| PAU_00083 | -83 | 3.8 | TTTTTTGATAGCAATCGCTGTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pck | ||||
| Ortholog function: Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3403 | -240 | 4.2 | GAATGCGATTCCACTCACAATA |
| -137 | 4 | TTTCGTGACAGGAATCACGGAG | ||
| Salmonella typhimurium LT2 | STM3500 | -241 | 4 | GAATGCGATTACAGTCACATTA |
| -107 | 3.9 | AATCGTGATTTTGTCCAGATAC | ||
| Citrobacter koseri ATCC BAA-895 | CKO_04825 | -107 | 3.9 | AATCGTGATTTTGTCCAGATAC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03773 | -242 | 3.7 | GAAAGCGATTACATTCACATTT |
| -138 | 3.7 | CTTCGTGACAGGAGTCACCGTT | ||
| Enterobacter sp. 638 | Ent638_3816 | -241 | 4.1 | GTATGCGATTACATTCACATTA |
| Yersinia pestis KIM | y3918 | -130 | 4.2 | ATTCGTGTTCCATCTCTCATAA |
| -80 | 3.8 | ATATTTGATAGCTATCGCTGTT | ||
| Serratia proteamaculans 568 | Spro_4617 | -80 | 4.1 | ATATTTGATACCTATCGCGGTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4106 | -81 | 4 | TTTTATGATTGCTATCGCGGTT |
| Edwardsiella tarda EIB202 | ETAE_3277 | -82 | 3.9 | TTTTTTGATGACTATCTCGGTT |
| Proteus mirabilis HI4320 | PMI3015 | -131 | 4 | ATTTGTGCATTAGTTCTCGTTA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0100 | -86 | 3.8 | TTTTTTGATAACTATCGCTGTT |
|
Position: -109
Score: 3.9 Sequence: AGTTGTGATCGAAACAGCACTT
Locus tag: PAU_00105
|
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| PAU_00105 | -109 | 3.9 | AGTTGTGATCGAAACAGCACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: uspA3 | ||||
| Ortholog function: Universal stress protein A | ||||
| Enterobacter sp. 638 | Ent638_3909 | -195 | 3.8 | AAAGTCGATCGGGTTCACGTTT |
| Yersinia pestis KIM | y3859 | -151 | 3.6 | ATTAGTGATCATTGTCAAAACC |
| Serratia proteamaculans 568 | Spro_4691 | -123 | 4 | CAGTGTGATCGCCTCAACATAT |
| Proteus mirabilis HI4320 | PMI3009 | -290 | 3.6 | AGTTGTTCGCTTTTTCAAAAAA |
| -113 | 3.8 | AGTTGTGATCAAGGCAACATCT | ||
|
Position: -89
Score: 3.5 Sequence: AAACACAACTTACCTCACATTT
Locus tag: PAU_00106
|
||||
| PAU_00106 | -89 | 3.5 | AAACACAACTTACCTCACATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gdhA | ||||
| Ortholog function: NADP-specific glutamate dehydrogenase (EC 1.4.1.4) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1761 | -106 | 3.5 | TTTCTTGCTTACCGTCACATTC |
| Salmonella typhimurium LT2 | STM1299 | -107 | 3.6 | TTTCTTGCTTACCGTCACATTG |
| -55 | 3.6 | TATTCTGATAAAACGCAAATAC | ||
| Citrobacter koseri ATCC BAA-895 | CKO_01789 | -107 | 3.4 | TTTCTTGCTTACCGTCACACTG |
| Enterobacter sp. 638 | Ent638_1685 | -110 | 3.3 | AATTTTCACTTGCCTCGCAAAG |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0051 | -234 | 3.6 | TTTTGTTATATAACAAAAACTT |
| Proteus mirabilis HI4320 | PMI3008 | -195 | 3.4 | AATCCTGATTTTATTAGCCTTT |
| -88 | 3.5 | AAACAATATCAACCTCACATAA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0122 | -92 | 3.5 | AAACACAACTTACCTCACATTT |
|
Position: -125
Score: 3.5 Sequence: ATTTGCCACCCATATCACGCAA
Position: -54
Score: 4 Sequence: AATTGTGAGCGAAAACGAACAT
Locus tag: PAU_00133
|
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| PAU_00133 | -125 | 3.5 | ATTTGCCACCCATATCACGCAA | |
| -54 | 4 | AATTGTGAGCGAAAACGAACAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glpD | ||||
| Ortholog function: glycerol-3-phosphate dehydrogenase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3426 | -116 | 4.4 | TAATGTTATACATATCACTCTA |
| Salmonella typhimurium LT2 | STM3526 | -116 | 4.4 | TAATGTTATACATATCACTCTA |
| Citrobacter koseri ATCC BAA-895 | CKO_04845 | -116 | 4.5 | TAATGTTATATGTATCACTCTA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03792 | -119 | 3.7 | ATATGTTACACCCATCACTTCA |
| -58 | 3.7 | TATAGTGAGCGATATCGAGCAT | ||
| Enterobacter sp. 638 | Ent638_3835 | -116 | 4.4 | TTATGTTATCTCTATCACTCAA |
| -55 | 4 | TATTATGAGCGATATCGAACAT | ||
| Erwinia amylovora ATCC 49946 | EAM_3265 | -124 | 4 | AGACGTTATCGGCATCACGCAT |
| Yersinia pestis KIM | y3891 | -129 | 4.4 | AAATGTTACCTCCATCACGCAT |
| Serratia proteamaculans 568 | Spro_4642 | -129 | 3.6 | AACTGTTACCTCTATCACGCCT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4141 | -144 | 4.3 | TAATGTGACAACTATCATCATA |
| -124 | 4.4 | TATTGTTAGCTTCATCACGCAT | ||
| Edwardsiella tarda EIB202 | ETAE_3312 | -124 | 4.3 | TTGTGTTATCCGCATCGCGTAA |
| Proteus mirabilis HI4320 | PMI2930 | -129 | 4.4 | AATTGTTATTTATATCACGCAG |
|
Position: -320
Score: 4.3 Sequence: AATTGTGATCCTTTTCACGCCC
Locus tag: PAU_00179
|
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| PAU_00179 | -320 | 4.3 | AATTGTGATCCTTTTCACGCCC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glnA | ||||
| Ortholog function: glutamine synthetase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3870 | -269 | 4.2 | CTTTGTGATCGCTTTCACGGAG |
| Salmonella typhimurium LT2 | STM4007 | -272 | 4.2 | CTTTGTGATCGCTTTCACGGAG |
| -114 | 3.8 | CAATGTGAAAGTTGGCACAGAT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03140 | -250 | 4.2 | CTTTGTGATCGCTTTCACGGAG |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04178 | -299 | 3.9 | CTTTGTGACCGCTTTCACGGAG |
| Serratia proteamaculans 568 | Spro_4881 | -267 | 4 | GTATGTGATCCCTTTCACGGTG |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0029 | -265 | 4.2 | CTTTGTGATCCCTTTCACGGTG |
| Edwardsiella tarda EIB202 | ETAE_3493 | -267 | 4.2 | GTTTGTGATCCTATTCACGATG |
| Proteus mirabilis HI4320 | PMI2882 | -270 | 4.7 | AATTGTGATCCTTTTCACGCCT |
| -215 | 3.8 | AATTGTGCAACTATTCAGACTT | ||
| -181 | 3.9 | ATTTGTGCAATAATTAAAAAAT | ||
|
Position: -100
Score: 4.9 Sequence: TTTTGCGATAAGCATCACAATT
Locus tag: PAU_00366
|
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| PAU_00366 | -100 | 4.9 | TTTTGCGATAAGCATCACAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: malK | ||||
| Ortholog function: maltose/maltodextrin transporter ATP-binding protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4035 | -254 | 4.4 | TTGTGTGATCTCTGTTACAGAA |
| -225 | 3.9 | TAATGTGGAGATGCGCACATAA | ||
| -191 | 3.7 | TTTTGCAAGCAACATCACGAAA | ||
| Salmonella typhimurium LT2 | STM4230 | -254 | 4.7 | TTATGTGATCTGTGTTGCATAA |
| -225 | 3.6 | TAATGCGTGCTGGCGCACACAA | ||
| -223 | 3.8 | ATGCGTGCTGGCGCACACAAAA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03880 | -254 | 4.7 | TTATGTGATCTGTGTTGCATAA |
| -225 | 3.7 | TAATGCGTGTTGGCGCACATAA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04424 | -254 | 4.5 | TTGTGTGATCTCCATTGCAAAA |
| -225 | 3.7 | TATTGCGTCCTGGAGCACAGAA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0457 | -250 | 4 | GGGTGTGATCTCTATTACAAAA |
| -221 | 3.8 | AAGCGTGCCGTTGCCCACAAAA | ||
| -187 | 4.9 | TTTTGCGATAAATATCACAATT | ||
|
Position: -219
Score: 5.2 Sequence: AATTGTGATGCTTATCGCAAAA
Locus tag: PAU_00367
|
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| PAU_00367 | -219 | 5.2 | AATTGTGATGCTTATCGCAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: malE | ||||
| Ortholog function: maltose ABC transporter periplasmic protein | ||||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0458 | -213 | 5.3 | AATTGTGATATTTATCGCAAAA |
| -150 | 4.1 | TTTTGTAATAGAGATCACACCC | ||
|
Position: -179
Score: 3.4 Sequence: AAACGTGATTTAATGCTTTAAA
Locus tag: PAU_00403
|
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| PAU_00403 | -179 | 3.4 | AAACGTGATTTAATGCTTTAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hupA | ||||
| Ortholog function: DNA-binding protein HU-alpha (HU-2) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4000 | -179 | 3.4 | AAACGTGATTTAACGCCTGATT |
| Citrobacter koseri ATCC BAA-895 | CKO_02986 | -179 | 3.4 | AAACGTGATTTAACGCCTGATT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04382 | -179 | 3.4 | AAACGTGATTTACCGCCTGAAT |
| Enterobacter sp. 638 | Ent638_0213 | -179 | 3.5 | AAACGTGATTTAACGCCTGTTT |
| Yersinia pestis KIM | y0499 | -181 | 3.4 | AAACGTGATTTAACGCCTGATT |
| Serratia proteamaculans 568 | Spro_0290 | -181 | 3.4 | AAACGTGATTTAACGCCTCATT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0238 | -197 | 3.3 | AAACGTGATTTAAGGCCTGAAA |
| Edwardsiella tarda EIB202 | ETAE_0183 | -182 | 3.3 | AAACGTGATTTAACACCTGATT |
| Proteus mirabilis HI4320 | PMI2771 | -183 | 3.7 | AAACGTGATTTAGTGCTTGAAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0492 | -179 | 3.4 | AAACGTGATTTAATGCTTTAAA |
|
Position: -251
Score: 4.2 Sequence: TATCCTGATTTTTTTCTCATTT
Position: -211
Score: 3.4 Sequence: TTTTTTAGTTTATCTTACATAA
Position: -112
Score: 3.6 Sequence: AATTGTTTTTTATATTATAAAA
Position: -103
Score: 3.6 Sequence: TTATATTATAAAAATAAAAATT
Position: -65
Score: 3.8 Sequence: GTTTTTGATTTATTTTAAATAT
Position: 14
Score: 3.6 Sequence: TTTAGTGACTGAATTATCGTTT
Locus tag: PAU_00416
|
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| PAU_00416 | -251 | 4.2 | TATCCTGATTTTTTTCTCATTT | |
| -211 | 3.4 | TTTTTTAGTTTATCTTACATAA | ||
| -112 | 3.6 | AATTGTTTTTTATATTATAAAA | ||
| -103 | 3.6 | TTATATTATAAAAATAAAAATT | ||
| -65 | 3.8 | GTTTTTGATTTATTTTAAATAT | ||
| 14 | 3.6 | TTTAGTGACTGAATTATCGTTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aceB | ||||
| Ortholog function: malate synthase A | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4014 | -117 | 3.6 | AATTGTTTTTGATTTTGCATTT |
| Salmonella typhimurium LT2 | STM4183 | -168 | 3.3 | TTAATTTATATTGTTATCAATA |
| Citrobacter koseri ATCC BAA-895 | CKO_03906 | -166 | 3.3 | TATTTTTATTGTTATCAATAAG |
| Yersinia pestis KIM | y0015 | -254 | 3.3 | ATGAGTTATAGCCATTAAAAAT |
| Serratia proteamaculans 568 | Spro_4503 | -228 | 3.5 | TGTTGTTATGTTTATTAACCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3991 | -185 | 3.3 | TTTTTTAATTTTAATCTTCATT |
| Proteus mirabilis HI4320 | PMI2764 | -68 | 3.7 | ATTTTTGATTTTTGTAAAAACT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4396 | -65 | 3.8 | GTTTTTGATTTATTTTAAATAT |
|
Position: -178
Score: 5.4 Sequence: TTTTGTGATGCCGATCACGTTT
Locus tag: PAU_00494
|
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| PAU_00494 | -178 | 5.4 | TTTTGTGATGCCGATCACGTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nupC2 | ||||
| Ortholog function: Na+ dependent nucleoside transporter | ||||
| Yersinia pestis KIM | y3744 | -154 | 3.8 | CTTTGTCAATAACCTCACATAT |
| -115 | 5.5 | TAATGTGATTATGATCACATTT | ||
| Serratia proteamaculans 568 | Spro_0659 | -181 | 3.9 | AACCGTGACGCATGTCACGTAC |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0473 | -182 | 4.9 | AATTGTGACGAAGATCACTTTT |
| Edwardsiella tarda EIB202 | ETAE_0482 | -232 | 4.9 | TGATGTGATATGCATCACTTTT |
| Proteus mirabilis HI4320 | PMI2418 | -180 | 5.2 | TAGTGTGATTTAGATCTCATTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0519 | -178 | 5.5 | TTGTGTGATTCACATCACATTT |
|
Position: -315
Score: 5.6 Sequence: AATTGTGATTTAAGTCACATAT
Position: -263
Score: 4.7 Sequence: TAGTGTGATATCAGGCACAATT
Locus tag: PAU_00513
|
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| PAU_00513 | -315 | 5.6 | AATTGTGATTTAAGTCACATAT | |
| -263 | 4.7 | TAGTGTGATATCAGGCACAATT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: deoC | ||||
| Ortholog function: 2-deoxyribose-5-phosphate aldolase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4381 | -149 | 4.6 | TTATTTGAACCAGATCGCATTA |
| -96 | 4.5 | AATTGTGATGTGTATCGAAGTG | ||
| Salmonella typhimurium LT2 | STM4567 | -133 | 4.9 | TAATTTGATTCAGATCTCATTA |
| -80 | 4.2 | AACTGTGATGTATATCGAAGTG | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03410 | -134 | 4.2 | TTATTTGAAGTGGATCTCGTTA |
| -81 | 4.2 | AACTGTGATGTATATCGAAGTG | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04837 | -158 | 5.2 | ATTTGTGATTTTAATCACGTTA |
| -105 | 3.7 | AACTGTGATGAATGTCGAAGTG | ||
| Enterobacter sp. 638 | Ent638_0541 | -151 | 4.6 | AAATTTGAAGTGGATCTCATTA |
| -98 | 3.7 | AACTGTGATGAATGTCGAAGTG | ||
| Erwinia amylovora ATCC 49946 | EAM_0615 | -233 | 4.6 | TGATGTGATAATTCTAACATTA |
| Yersinia pestis KIM | y3743 | -169 | 3.7 | TGCGGTGAGATGGATCTCAATT |
| Serratia proteamaculans 568 | Spro_0660 | -262 | 4.6 | ATTTGTGAACGATATCGCGTTA |
| -240 | 5.5 | TTTTGTGATGGTCTTCACATAT | ||
| -188 | 3.8 | TAGTGTGACTGTGAACGCGAAT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0727 | -282 | 4.4 | AAGTGTGAATGAATGCACAAAA |
| Proteus mirabilis HI4320 | PMI2416 | -267 | 4.4 | ATATGTGAGTTACTTCGCAACT |
| -135 | 5.6 | TTTTGTGATTCTGATCACAATT | ||
| -83 | 4.5 | TATTGTGACAGAAAGCACATCT | ||
|
Position: -181
Score: 4.2 Sequence: ATGTTTGACTTTGTGCACAAAT
Locus tag: PAU_00533
|
||||
| PAU_00533 | -181 | 4.2 | ATGTTTGACTTTGTGCACAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: thrA | ||||
| Ortholog function: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0002 | -83 | 3.8 | TTTATTGACTTAGGTCACTAAA |
| Salmonella typhimurium LT2 | STM0002 | -103 | 4.2 | GAATGTGATCAATTTAAAAATT |
| Citrobacter koseri ATCC BAA-895 | CKO_03385 | -249 | 4.1 | GAATGTGATCAAATTAAAAATT |
| Enterobacter sp. 638 | Ent638_0564 | -252 | 4.4 | AATTGTGATCAAATTAGAAATT |
| Proteus mirabilis HI4320 | PMI0001 | -232 | 3.9 | AAATTTGACATCTCTCTCGCTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0563 | -223 | 4.2 | ATGTTTGACTTTGCGCACAAAT |
|
Position: -123
Score: 4.7 Sequence: TTATGAGATGCAGATCACCAAT
Locus tag: PAU_00551
|
||||
| PAU_00551 | -123 | 4.7 | TTATGAGATGCAGATCACCAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nhaA | ||||
| Ortholog function: Na+/H+ antiporter NhaA type | ||||
| Salmonella typhimurium LT2 | STM0039 | -97 | 3.7 | AAACGAGCTATTCATCATATAT |
| Yersinia pestis KIM | y3704 | -147 | 4.1 | AAATGTGATATGCGTTATCAAT |
| Serratia proteamaculans 568 | Spro_0694 | -120 | 4.7 | AAGTGTGATATAAATCGCTTAT |
| Proteus mirabilis HI4320 | PMI0011 | -110 | 3.9 | ATAAGCGATTGAGATCGAAAAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0587 | -122 | 4.4 | TATTGAGATGTAGATCATCAAT |
|
Position: -319
Score: 4.1 Sequence: AACTGTGAACTTAATCACTGAA
Position: -112
Score: 4.3 Sequence: ACATTTGAGCTTAATCACAAAA
Locus tag: PAU_00704
|
||||
| PAU_00704 | -319 | 4.1 | AACTGTGAACTTAATCACTGAA | |
| -112 | 4.3 | ACATTTGAGCTTAATCACAAAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fucA | ||||
| Ortholog function: L-fuculose phosphate aldolase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2800 | -144 | 4.1 | TTAGTTGAACCAGGTCACAAAA |
| -54 | 4 | TAGTGTGAAAGGAACAACATTA | ||
| Salmonella typhimurium LT2 | STM2974 | -157 | 4.8 | TTAATTGATGTGAATCACAAAA |
| Citrobacter koseri ATCC BAA-895 | CKO_04159 | -144 | 4.7 | TTAATTGATGCGTATCACAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03151 | -155 | 4.4 | ATAATTGACGCGGCTCACAAAA |
| Edwardsiella tarda EIB202 | ETAE_0293 | -175 | 4.2 | AGTCTTGATGACGGTCACAAAA |
|
Position: -274
Score: 3.6 Sequence: AAACGTGGTCAGAAGCGCAATA
Locus tag: PAU_00798
|
||||
| PAU_00798 | -274 | 3.6 | AAACGTGGTCAGAAGCGCAATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hpt | ||||
| Ortholog function: hypoxanthine phosphoribosyltransferase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0125 | -147 | 5.3 | ATGTGTGATCGTCATCACAATT |
| Salmonella typhimurium LT2 | STM0170 | -147 | 5.3 | ATGTGTGATCGTCATCACAAAA |
| Citrobacter koseri ATCC BAA-895 | CKO_03242 | -135 | 5.3 | AAGTGTGATCGTCATCACAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00133 | -134 | 5.4 | AAGTGTGATCGGAATCACAAAT |
| Enterobacter sp. 638 | Ent638_0673 | -180 | 3.6 | AATTTTGATAGCAATTAATTAT |
| -148 | 5.4 | AAGTGTGATCGGAATCACAAAT | ||
| Proteus mirabilis HI4320 | PMI0160 | -154 | 3.6 | TACTGTAATAAGTAACAAAATT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0860 | -144 | 4 | AATTCTGATATGCTTTGCAAAA |
|
Position: -42
Score: 3.7 Sequence: CTTCATTATCTATATCGCAATA
Locus tag: PAU_01129
|
||||
| PAU_01129 | -42 | 3.7 | CTTCATTATCTATATCGCAATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ppdD | ||||
| Ortholog function: predicted major pilin subunit | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0108 | -145 | 3.2 | CTTCGTAACGCCTCGCAAATTT |
| Citrobacter koseri ATCC BAA-895 | CKO_03268 | -146 | 3.4 | TTTTTCGAGCGGCCTCGCAAAC |
| Yersinia pestis KIM | y0761 | -123 | 3.8 | TTACGTTATTGCAATAACCTAA |
| Proteus mirabilis HI4320 | PMI2049 | -146 | 4.3 | TAATGCGAACTTGCTCTCAATA |
|
Position: -82
Score: 3.4 Sequence: TTTTGTGTGAGCAATCACCCCA
Locus tag: PAU_01137
|
||||
| PAU_01137 | -82 | 3.4 | TTTTGTGTGAGCAATCACCCCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pdhR | ||||
| Ortholog function: Transcriptional repressor for pyruvate dehydrogenase complex | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0113 | -156 | 3.7 | AAACGTTATATATGTCAAGTTG |
| -131 | 3.8 | AAATGTGCACAGTTTCATGATT | ||
| Salmonella typhimurium LT2 | STM0151 | -157 | 3.5 | AAACATGATTTCTGTAAAATTG |
| -120 | 3.2 | TTTACTGATTTCAATCAAAACC | ||
| -79 | 3 | CTTATTAAGCTTTCTCACGAAA | ||
| -54 | 3.4 | TAATGGGACAGGTTCCAGATAA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03260 | -180 | 3.2 | ATTTGTGCATAGTTACATCTTT |
| -157 | 3.1 | AAACGTTATTTCTGTAATCTTG | ||
| -148 | 3.3 | TTCTGTAATCTTGTTAAAATGT | ||
| -120 | 3.2 | TTTACTGATTTCAATCAAAACC | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00117 | -155 | 3.2 | AAATGTTATTTCTGTAAGGTTG |
| -118 | 3.2 | TTTACTGATTTCAATCAAAACC | ||
| Enterobacter sp. 638 | Ent638_0659 | -120 | 3.2 | TTTACTGATTTCAATCAAAACC |
| -77 | 3.1 | TATTGTATTTTCTGGCGAAAAT | ||
| -68 | 3 | TTTAGCGATACGAATATGAAAT | ||
| Erwinia amylovora ATCC 49946 | EAM_0746 | -198 | 3.3 | TAAAGCGATCGGATTTAACAAT |
| Yersinia pestis KIM | y0766 | -151 | 4.2 | AAATGTGCTGGGTTTCATGATT |
| -139 | 3.3 | TTTCATGATTTCGGTCAAGGTC | ||
| -74 | 3.4 | TTTTGAAATTGGTATTACCAAT | ||
| Serratia proteamaculans 568 | Spro_4012 | -132 | 3.1 | AAATGTGCGGGTAACCTGATTT |
| -56 | 3.4 | TTTTGAAATTGGTATTACCAAT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3790 | -120 | 3.7 | ATTGGTGATTTAGCTCAAGGTC |
| -55 | 3.4 | TTTTGAAATTGGTATTACCAAT | ||
| Edwardsiella tarda EIB202 | ETAE_0658 | -143 | 3.2 | TTTCATGATTTACATCAATAGT |
| Proteus mirabilis HI4320 | PMI2047 | -218 | 3.1 | TGTTTTTAATCTTTTCTAATAA |
| -199 | 4.4 | TAATGCGATCTAGTTATCAAAT | ||
| -181 | 4.2 | AAATTTGATGAATTTATCAAAT | ||
| -158 | 3 | ATTTGTTAAAATTTGCAGGTTT | ||
| -138 | 3.9 | TTTTATGATTTCGCTCAACAAC | ||
| -95 | 3.1 | CTTTGTTACTTTATTATCCATT | ||
| -89 | 3.1 | TACTTTATTATCCATTACATTA | ||
|
Position: -131
Score: 3.9 Sequence: TGTTGCGAGTTCTGTCACGTTA
Locus tag: PAU_01140
|
||||
| PAU_01140 | -131 | 3.9 | TGTTGCGAGTTCTGTCACGTTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lpdA | ||||
| Ortholog function: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0116 | -224 | 3.3 | AATTGTTAACAATTTTGTAAAA |
| Salmonella typhimurium LT2 | STM0154 | -153 | 3.5 | GTTTGTGAGGTTATTAGCGAAA |
| Citrobacter koseri ATCC BAA-895 | CKO_03256 | -95 | 3.3 | AATTGTTAACAATTTTGTAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00120 | -105 | 3.3 | AATTGTTAACAATTTTGTAAAA |
| Yersinia pestis KIM | y0769 | -253 | 3.3 | ATTGGTGATCTTGTTATTACTG |
| Serratia proteamaculans 568 | Spro_4009 | -246 | 3.6 | TATGGTGATGTAATGAAAAAAG |
| Proteus mirabilis HI4320 | PMI2044 | -133 | 3.4 | GGTTGTGAGATCTGTCATGTTA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3621 | -131 | 3.9 | TGTTGCGAGTTCTGTCACGTTA |
|
Position: -263
Score: 4 Sequence: TTATGTGAACGAATTAACATCG
Locus tag: PAU_01141
|
||||
| PAU_01141 | -263 | 4 | TTATGTGAACGAATTAACATCG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: acnB | ||||
| Ortholog function: Aconitate hydratase 2 (EC 4.2.1.3) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0118 | -144 | 3.5 | TTTTGTAAACAGATTAACACCT |
| Salmonella typhimurium LT2 | STM0158 | -157 | 3.9 | TTTTGTAAACAGATTAACACTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00124 | -260 | 3.5 | TTTTGTAAACAGATTAACACCT |
| Yersinia pestis KIM | y0771 | -276 | 4.3 | TTATGTGAACGAATTAACACTG |
| Serratia proteamaculans 568 | Spro_4008 | -192 | 3.9 | TTATGTGAACGAATTAACAACC |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3778 | -163 | 4.3 | TTATGTGAACGAATTAACAATC |
| Proteus mirabilis HI4320 | PMI2040 | -177 | 4.5 | TTATGTGAACGAATTAACATAG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3619 | -261 | 3.6 | TTCTGTGAACGAATTAACATCG |
|
Position: -295
Score: 3.5 Sequence: TATTGTTATTAAAATGAAATTC
Locus tag: PAU_01233
|
||||
| PAU_01233 | -295 | 3.5 | TATTGTTATTAAAATGAAATTC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: prpR | ||||
| Ortholog function: Propionate catabolism operon regulatory protein PrpR | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0330 | -107 | 3.7 | ATATGCGTTTCAGTTAACGTTT |
| Salmonella typhimurium LT2 | STM0367 | -89 | 3.5 | TTTCATGAAACGAATCACCCTG |
| Citrobacter koseri ATCC BAA-895 | CKO_02831 | -179 | 3.4 | AATTTTGTTTTTTCTTATAATT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3543 | -225 | 4 | ATATATGATTGTTTTTAAATTA |
|
Position: -124
Score: 4.5 Sequence: CAATGTGATCTTTAACGCATTT
Locus tag: PAU_01357
|
||||
| PAU_01357 | -124 | 4.5 | CAATGTGATCTTTAACGCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: treB | ||||
| Ortholog function: PTS system, trehalose-specific IIB component (EC 2.7.1.69) / PTS system, trehalose-specific IIC component (EC 2.7.1.69) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4240 | -101 | 3.8 | AATTGTGATCTTCGCTGCGTTT |
| Citrobacter koseri ATCC BAA-895 | CKO_03571 | -156 | 3.8 | ATTTGTGATCTTCGCTGCGTTT |
| Enterobacter sp. 638 | Ent638_0439 | -106 | 4 | TATTGTGATCTTCACCCGATTT |
| Serratia proteamaculans 568 | Spro_0529 | -124 | 3.8 | TTTTGTGATCCTCGCCCCAAAC |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3288 | -127 | 4.3 | CAATGTGATCTTCAACCCATTT |
|
Position: -271
Score: 4.2 Sequence: TTCTGTGTGGTAGATCAAATTT
Locus tag: PAU_01404
|
||||
| PAU_01404 | -271 | 4.2 | TTCTGTGTGGTAGATCAAATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ptsH | ||||
| Ortholog function: PTS system phosphocarrier protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2415 | -209 | 3.9 | TTTTATGATTTGGTTCAATTCT |
| Salmonella typhimurium LT2 | STM2431 | -209 | 4.4 | TTTTATGATTTGGTTCAAATCT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02762 | -206 | 4 | TTTTATGATTTGGTTCAAGTCT |
| Enterobacter sp. 638 | Ent638_2943 | -271 | 4.4 | TTTTGTGGTCCACTTCAAACTT |
| -144 | 4 | TTTTATGATTTGGTTCAAGTCT | ||
| Serratia proteamaculans 568 | Spro_3448 | -149 | 3.6 | TTTTTTGATCTGAAGTGCCAAA |
| Proteus mirabilis HI4320 | PMI1828 | -275 | 4.4 | TTTTGTGGTAGAGATCAAACTT |
| -115 | 3.6 | TAACGTAACATGGCTTATATTA | ||
|
Position: -76
Score: 4.9 Sequence: AAATGTGATCAATCTCACTAAA
Position: -24
Score: 4.4 Sequence: TAGTGTGATATTTATCCTATTT
Locus tag: PAU_01409
|
||||
| PAU_01409 | -76 | 4.9 | AAATGTGATCAATCTCACTAAA | |
| -24 | 4.4 | TAGTGTGATATTTATCCTATTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nupC | ||||
| Ortholog function: Nucleoside permease NupC | ||||
| Proteus mirabilis HI4320 | PMI1822 | -132 | 3.9 | AAGTGTGATCAACCTATCTTAT |
| -80 | 4.4 | TATTGTGACAATAATCACATCG | ||
| -58 | 3.8 | TAATGTTACGCGTTACATAAAA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1399 | -213 | 3.8 | TAATGTGATATCTATACTCTAT |
|
Position: -55
Score: 4 Sequence: AGATGAGATAAGCTTTACATAT
Locus tag: PAU_01412
|
||||
| PAU_01412 | -55 | 4 | AGATGAGATAAGCTTTACATAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glk | ||||
| Ortholog function: glucokinase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2388 | -116 | 4.1 | TTGTGTGACCCAGATCGATATT |
| Salmonella typhimurium LT2 | STM2403 | -116 | 3.9 | TTCTGTGATGAAGATCTATATT |
| Citrobacter koseri ATCC BAA-895 | CKO_00412 | -116 | 4.5 | TTATGTGATGCAGATCGATATT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02738 | -117 | 4.4 | AAATGTGACCTGTGTCGCTAAA |
| Enterobacter sp. 638 | Ent638_2921 | -116 | 3.8 | TTCTGTGACGAAGATCGATTAT |
| Yersinia pestis KIM | y1505 | -113 | 4.7 | TTATGAGATGTCAGTCACAAAA |
| Serratia proteamaculans 568 | Spro_3407 | -116 | 4.8 | TTTTGTGATCCGGATCGCTAAT |
|
Position: -185
Score: 4 Sequence: TTTTGTTAACTGAGTCGCGTTT
Locus tag: PAU_01414
|
||||
| PAU_01414 | -185 | 4 | TTTTGTTAACTGAGTCGCGTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fadL | ||||
| Ortholog function: Long-chain fatty acid transport protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2344 | -269 | 4.8 | ATAAGTGACCGAAATCACACTT |
| -247 | 3.9 | AAAAATGATCTAAAACAAAATT | ||
| Salmonella typhimurium LT2 | STM2391 | -262 | 4.8 | TTAAGTGACCGAAATCACACTT |
| -240 | 3.9 | AAAAATGATCTAAAACAAAAAT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00446 | -263 | 4.8 | ATAAGTGACCGAAATCACACTT |
| -241 | 3.9 | AAAAATGATCTAAAACAAAAAT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02726 | -264 | 4.7 | TTAAGTGACAGAAATCACACTT |
| -242 | 3.9 | AAAAATGATCTAAAACAAAAAT | ||
| Enterobacter sp. 638 | Ent638_2884 | -269 | 4.2 | GTAAGTGACCGATATCACACTA |
| -247 | 4 | AAAAATGATCTAGCGCAAAAAT | ||
| -214 | 3.7 | ATGAGTGCGACGGCTCGCATTT | ||
| Erwinia amylovora ATCC 49946 | EAM_2348 | -194 | 3.9 | TTTTGTTAAGCAGATCTCTTTT |
| Serratia proteamaculans 568 | Spro_3381 | -271 | 5.1 | TTAAGTGATGGAAATCACAAAT |
| -196 | 3.8 | TTTTGTTAGCCAGATCTCTCTT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3081 | -332 | 3.8 | AATTTTTATCTTCCTTATATTT |
| -262 | 4.9 | TTTAGTGATATCAGTCACATTA | ||
| Proteus mirabilis HI4320 | PMI1810 | -326 | 3.7 | AAGTGTTAATTATCTATCATAA |
| -186 | 4.2 | TAATGTTAACTAAATCCCAAAT | ||
|
Position: -204
Score: 4.7 Sequence: ATTTGTGATTATAAACACAAAA
Locus tag: PAU_01423
|
||||
| PAU_01423 | -204 | 4.7 | ATTTGTGATTATAAACACAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hutU | ||||
| Ortholog function: urocanate hydratase | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02357 | -123 | 3.8 | AAGCGTGATTGCTGACGCAATA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00795 | -124 | 4 | AAACGTGATTGCTGACGCAATA |
| Enterobacter sp. 638 | Ent638_1263 | -120 | 4 | AAGCGTGATAGCTAACGCAATA |
| Erwinia amylovora ATCC 49946 | EAM_1253 | -121 | 3.8 | TTTTGTGACAAAGCTGGCACAA |
| Yersinia pestis KIM | y4038 | -261 | 4.9 | ATATGTGATTTGGTGCGCAAAT |
| Serratia proteamaculans 568 | Spro_0805 | -196 | 4.8 | TATTGTGATTTGACGCGCAAAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3193 | -203 | 4.7 | ATTTGTGATTATAAACACAAAA |
|
Position: -4
Score: 3.8 Sequence: TATTATGAAACAGTTAACTATT
Locus tag: PAU_01424
|
||||
| PAU_01424 | -4 | 3.8 | TATTATGAAACAGTTAACTATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hutH | ||||
| Ortholog function: histidine ammonia-lyase | ||||
| Salmonella typhimurium LT2 | STM0791 | -180 | 4.3 | AAACGTGATTGCTGACACAATA |
| Citrobacter koseri ATCC BAA-895 | CKO_02356 | -123 | 3.8 | AAGCGTGATTGCTGACGCAATA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00796 | -124 | 4 | AAACGTGATTGCTGACGCAATA |
| Enterobacter sp. 638 | Ent638_1264 | -120 | 4 | AAGCGTGATAGCTAACGCAATA |
| Erwinia amylovora ATCC 49946 | EAM_1254 | -121 | 3.8 | TTTTGTGACAAAGCTGGCACAA |
| Yersinia pestis KIM | y4037 | -261 | 4.9 | ATATGTGATTTGGTGCGCAAAT |
| Serratia proteamaculans 568 | Spro_0804 | -196 | 4.8 | TATTGTGATTTGACGCGCAAAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3192 | -203 | 4.7 | ATTTGTGATTATAAACACAAAA |
|
Position: -178
Score: 3.8 Sequence: AATTTTTATTTAAAAAACAATT
Position: -125
Score: 3.7 Sequence: TAGCACTATTTAGATCACAATT
Position: -96
Score: 4.1 Sequence: AAATTTGATCCACGTTATATTA
Position: -1
Score: 3.5 Sequence: AGTGGTTATGGCGATAAAATTA
Position: 5
Score: 3.4 Sequence: TATGGCGATAAAATTAACGAAA
Locus tag: PAU_01470
|
||||
| PAU_01470 | -178 | 3.8 | AATTTTTATTTAAAAAACAATT | |
| -125 | 3.7 | TAGCACTATTTAGATCACAATT | ||
| -96 | 4.1 | AAATTTGATCCACGTTATATTA | ||
| -1 | 3.5 | AGTGGTTATGGCGATAAAATTA | ||
| 5 | 3.4 | TATGGCGATAAAATTAACGAAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lsrR | ||||
| Ortholog function: LsrR, transcriptional repressor of lsr operon | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1512 | -87 | 4.1 | AACTGTGGTTGCCATCACAGAT |
| Salmonella typhimurium LT2 | STM4073 | -161 | 3.6 | AACTCTCATCCAGATCACGTTT |
| -92 | 4 | TTTTGTGGCGTTAATCACGGTT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03508 | -75 | 3.7 | TTTTGCCAGTCGGCTCACACTT |
| Enterobacter sp. 638 | Ent638_3537 | -122 | 3.4 | TTTATTGATTAGGATCCAATTC |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3142 | -137 | 4.3 | AATTGTGATCTTGGCAATATTT |
|
Position: -306
Score: 3.8 Sequence: AACTTTGAACGAGATCAAAAAG
Locus tag: PAU_01497
|
||||
| PAU_01497 | -306 | 3.8 | AACTTTGAACGAGATCAAAAAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: astC | ||||
| Ortholog function: bifunctional succinylornithine transaminase/acetylornithine transaminase | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01493 | -274 | 4 | TATCTTGATGATCTTCAAAAAG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3110 | -66 | 3.8 | AAAGATGATGCGGAGCATATTA |
|
Position: -143
Score: 3.7 Sequence: TATCATCATGCCTTTCACACTT
Position: -122
Score: 3.6 Sequence: TAGCATGATGTTAATCATTTAA
Locus tag: PAU_01513
|
||||
| PAU_01513 | -143 | 3.7 | TATCATCATGCCTTTCACACTT | |
| -122 | 3.6 | TAGCATGATGTTAATCATTTAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ackA | ||||
| Ortholog function: acetate kinase | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02687 | -95 | 3.8 | AGGCATGATGTTAATCATAAAT |
| Enterobacter sp. 638 | Ent638_2840 | -96 | 3.8 | TGGCATGATGTTAATCATAAAT |
| Serratia proteamaculans 568 | Spro_3316 | -125 | 3.8 | TCACATGATGTTAATCATAAAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3039 | -95 | 4.2 | AGGTATGATGTTAATCATAAAT |
| Proteus mirabilis HI4320 | PMI1771 | -123 | 3.6 | AAGCATGATGCGTATCATTAAT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3095 | -121 | 3.6 | TAGCATGATGTTAATCATTTAA |
|
Position: -184
Score: 4.5 Sequence: AAATGCGAGATTGATCGCATTT
Position: -140
Score: 3.8 Sequence: TAATGTAATACTATAAACACAA
Locus tag: PAU_01671
|
||||
| PAU_01671 | -184 | 4.5 | AAATGCGAGATTGATCGCATTT | |
| -140 | 3.8 | TAATGTAATACTATAAACACAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yejG | ||||
| Ortholog function: hypothetical protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2181 | -158 | 3.7 | AAACGTGACCACGCCCGCAGAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02614 | -204 | 3.8 | AAAGTTGTTTTGGATCACAGAA |
| Erwinia amylovora ATCC 49946 | EAM_2233 | -177 | 3.6 | AAATGAGCATTACTTCTCAAAA |
| Yersinia pestis KIM | y2914 | -238 | 4.4 | AAATGGGATCTGAATCCCAAAT |
| Serratia proteamaculans 568 | Spro_3250 | -214 | 4.2 | AAATGCGAGCTGAGTCGCAAAA |
| -121 | 4.1 | GCTTGTGATGTTTTTTACATTT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2740 | -178 | 4 | ATTCGTGATCAGTTTGGCATTA |
| -101 | 3.8 | TGTTGTTTTTTTGTTCACGAAA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2865 | -185 | 4.1 | AAATGAGAGATTGATCTCACTT |
| -183 | 3.6 | ATGAGAGATTGATCTCACTTTT | ||
| -141 | 3.8 | TAATGTAATACTATAAACACAA | ||
|
Position: -156
Score: 4 Sequence: TATTGTGAATATCATTATAAAA
Locus tag: PAU_01672
|
||||
| PAU_01672 | -156 | 4 | TATTGTGAATATCATTATAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: spr | ||||
| Ortholog function: predicted peptidase, outer membrane lipoprotein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2175 | -130 | 4.1 | TTTTGTGCGTTAGTCCACAGAT |
| Salmonella typhimurium LT2 | STM2214 | -128 | 3.7 | ATTTGTGCGTTCCGCCACAGAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02608 | -292 | 3.6 | TAGGGTAATCTCGTTCTCGTTT |
| -234 | 4.2 | AATTGTGCGTGACTGCACAAAT | ||
| Enterobacter sp. 638 | Ent638_2771 | -250 | 3.6 | AATCGCTTTGTCTATCACAATT |
| Yersinia pestis KIM | y2908 | -128 | 3.7 | GAATGTGCGTTCATGCACATTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2735 | -159 | 3.9 | TAATGTGCATTCTGGCACACTT |
| Edwardsiella tarda EIB202 | ETAE_2298 | -131 | 4.4 | AAGTGTGTTCTGCTGCACAATT |
| Proteus mirabilis HI4320 | PMI0831 | -129 | 4.2 | TTACGTGCTTTAGAGCACGTTT |
|
Position: -138
Score: 3.6 Sequence: AAATTCGATCTAGTTATAAATA
Position: -74
Score: 3.7 Sequence: TAATGTGTTCGTTTGCAGACTT
Locus tag: PAU_01856
|
||||
| PAU_01856 | -138 | 3.6 | AAATTCGATCTAGTTATAAATA | |
| -74 | 3.7 | TAATGTGTTCGTTTGCAGACTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: tcyP | ||||
| Ortholog function: L-cystine uptake protein TcyP | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1729 | -90 | 3.9 | ATATAAGAGCCAGCTCACAGTT |
| Salmonella typhimurium LT2 | STM1320 | -91 | 3.9 | ATATAAGAGCCAGCTCACAGTT |
| Citrobacter koseri ATCC BAA-895 | CKO_01755 | -90 | 3.7 | ATATAAGAGGTCGGTCACAGTT |
| Yersinia pestis KIM | y1878 | -166 | 3.6 | TGATTTGATTTAATACAAATCA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2410 | -176 | 3.7 | TGACGTTATCTGCTGCACCCAT |
|
Position: -113
Score: 5.1 Sequence: AATTGTGACCTGAATCATAAAT
Locus tag: PAU_01970
|
||||
| PAU_01970 | -113 | 5.1 | AATTGTGACCTGAATCATAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dadA | ||||
| Ortholog function: D-amino acid dehydrogenase small subunit | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1189 | -116 | 4.7 | AGATGTGAGCCAGCTCACCATA |
| Salmonella typhimurium LT2 | STM1803 | -107 | 4.6 | ATATGTGAAGCACGTCACCATA |
| Citrobacter koseri ATCC BAA-895 | CKO_01193 | -107 | 4.5 | AGATGTGAGGTGCGTCACCATA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02309 | -106 | 4.1 | TGCTGTGAGTTAAGTCACCATA |
| Enterobacter sp. 638 | Ent638_2363 | -107 | 4.3 | AGGTGTGAGGTAAGTCACCATA |
| Serratia proteamaculans 568 | Spro_2746 | -113 | 4.6 | AATTGTGAATGTTGTCACGTTT |
| Proteus mirabilis HI4320 | PMI1509 | -121 | 4.7 | AAATGTGATTTGACTCTAAAAT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2561 | -114 | 5.4 | AATTGTGATCTAAATCATAAAT |
|
Position: -224
Score: 5 Sequence: ATTTGTGATGAAACTCTCATAT
Locus tag: PAU_01974
|
||||
| PAU_01974 | -224 | 5 | ATTTGTGATGAAACTCTCATAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gapA | ||||
| Ortholog function: glyceraldehyde-3-phosphate dehydrogenase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1779 | -226 | 5.3 | AATCGTGATGAAAATCACATTT |
| Salmonella typhimurium LT2 | STM1290 | -226 | 4.8 | AATCGTGACTGATGTCACATTA |
| Citrobacter koseri ATCC BAA-895 | CKO_01800 | -226 | 5 | AATCGTGATCGGAATCACGTTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01197 | -225 | 5.2 | AATTGTGACTTAAATCACGTTT |
| Enterobacter sp. 638 | Ent638_1675 | -225 | 5.7 | AATTGTGATCTTTCTCACATAT |
| Erwinia amylovora ATCC 49946 | EAM_1931 | -215 | 5.4 | AATTGTGATGCAGATCACCATT |
| Yersinia pestis KIM | y2165 | -218 | 5.1 | AAATGTGATAAAAATCGCAAAT |
| Serratia proteamaculans 568 | Spro_2728 | -227 | 5.6 | ATATGTGATACCGATCACATAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2344 | -235 | 5.8 | AATTGTGATGTGTATCACATAA |
| Edwardsiella tarda EIB202 | ETAE_1483 | -227 | 5.1 | TTTTGTGATGAGCATCACAAAC |
| Proteus mirabilis HI4320 | PMI1504 | -226 | 5.6 | AAATGTGATACATTTCACATAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2558 | -224 | 5.4 | TATTGTGATGTGACTCGCATAT |
|
Position: -89
Score: 3.9 Sequence: GAATGTGATAGCTGTCATGTAT
Locus tag: PAU_02019
|
||||
| PAU_02019 | -89 | 3.9 | GAATGTGATAGCTGTCATGTAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ygbJ | ||||
| Ortholog function: D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2736 | -90 | 4.9 | TTATGTGAATCAGATCACCATA |
| Salmonella typhimurium LT2 | STM2918 | -90 | 4 | TTTTGTGAAACAACTCACCGCA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01605 | -91 | 5 | ATTCGTGATAACTCTCACATAT |
| Erwinia amylovora ATCC 49946 | EAM_1106 | -90 | 4.4 | TGATGTGAAGTTTATCACTAAT |
| Serratia proteamaculans 568 | Spro_1492 | -92 | 4.1 | AATTGTGACAACGATCGCTGAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4327 | -92 | 4.5 | TTATGTGATAAAAATCACCACA |
| Edwardsiella tarda EIB202 | ETAE_1922 | -93 | 3.9 | ATTTGTGAGGATAAACACGGTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2507 | -147 | 3.8 | ATAAATAATATAAATCAAATAA |
| -90 | 3.7 | GAATGTGATAACCATCGTGTAT | ||
|
Position: -138
Score: 4.4 Sequence: TTGTGTGATTAAGATCAATATA
Locus tag: PAU_02030
|
||||
| PAU_02030 | -138 | 4.4 | TTGTGTGATTAAGATCAATATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: adhE | ||||
| Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1241 | -241 | 5 | AAATTTGATTTGGATCACGTAA |
| Salmonella typhimurium LT2 | STM1749 | -242 | 4.9 | AATCTTGATTTAGATCACACAA |
| Citrobacter koseri ATCC BAA-895 | CKO_01318 | -242 | 4.9 | AAATTTGATCTGGATCACGCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02199 | -237 | 4.7 | ATACTTGATCTAAATCACGTAA |
| Enterobacter sp. 638 | Ent638_2304 | -253 | 4.1 | TAAATTGATTCAGATCATGTTT |
| Erwinia amylovora ATCC 49946 | EAM_1900 | -223 | 3.9 | ATTGATGATCTGCATCATCTTT |
| Yersinia pestis KIM | y2023 | -286 | 5.3 | TTTTGTGATTTAAATCACGAAA |
| Serratia proteamaculans 568 | Spro_2704 | -278 | 5.1 | TTTTATGATTTAAATCACAAAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2326 | -315 | 4.5 | AAGTTCGATGTTGATCACAAAA |
| Edwardsiella tarda EIB202 | ETAE_1508 | -265 | 5 | TTTCGTGACCTTAATCACAAAA |
| Proteus mirabilis HI4320 | PMI1486 | -246 | 5.4 | TATTGTGATGTAGATCACTTTA |
| -187 | 3.7 | AAAGGAGATCTTTTTAAAATAT | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2496 | -237 | 3.7 | TATTTTTATTAGATTAAAAATT |
| -138 | 4.6 | TTATGTGATTAAGATCAATATA | ||
|
Position: -291
Score: 4.7 Sequence: TATATTGATCTTAATCACACAA
Locus tag: PAU_02031
|
||||
| PAU_02031 | -291 | 4.7 | TATATTGATCTTAATCACACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ychE | ||||
| Ortholog function: putative channel protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1242 | -257 | 5.1 | TTACGTGATCCAAATCAAATTT |
| Salmonella typhimurium LT2 | STM1748 | -256 | 4.8 | TTGTGTGATCTAAATCAAGATT |
| Citrobacter koseri ATCC BAA-895 | CKO_01319 | -167 | 5 | TTGCGTGATCCAGATCAAATTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02198 | -261 | 4.8 | TTACGTGATTTAGATCAAGTAT |
| Enterobacter sp. 638 | Ent638_2303 | -256 | 4 | AAACATGATCTGAATCAATTTA |
| Erwinia amylovora ATCC 49946 | EAM_1899 | -158 | 3.8 | AAAGATGATGCAGATCATCAAT |
| Serratia proteamaculans 568 | Spro_2703 | -268 | 5.2 | TTTTGTGATTTAAATCATAAAA |
| Proteus mirabilis HI4320 | PMI1485 | -290 | 5.3 | TAAAGTGATCTACATCACAATA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2495 | -295 | 4.9 | TATATTGATCTTAATCACATAA |
|
Position: -164
Score: 4 Sequence: AACTTTGATTTGCATCAATTTA
Position: -109
Score: 4.2 Sequence: ATATGCGATTTTGTTTAAATTA
Position: -39
Score: 3.7 Sequence: TATTTTGGTTTACTTTAAATAA
Locus tag: PAU_02049
|
||||
| PAU_02049 | -164 | 4 | AACTTTGATTTGCATCAATTTA | |
| -109 | 4.2 | ATATGCGATTTTGTTTAAATTA | ||
| -39 | 3.7 | TATTTTGGTTTACTTTAAATAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ompW | ||||
| Ortholog function: outer membrane protein W | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1256 | -166 | 4.9 | AAAATTGATTTAAATCACATTA |
| -82 | 3.8 | TAATGTGATCTATGTAGGATCA | ||
| Salmonella typhimurium LT2 | STM1732 | -82 | 4.2 | AAATGTGATCTGTATTAGATCA |
| Citrobacter koseri ATCC BAA-895 | CKO_01333 | -82 | 3.9 | TAATGTGATCTGTATTGGATCA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01248 | -101 | 3.9 | CATTGCGATCGGTAGCAAAAAT |
| -45 | 4 | TAGTGTGATCTAAAACAGATCA | ||
| Enterobacter sp. 638 | Ent638_2283 | -121 | 3.7 | AAAATTAATCTGGATCAACAAA |
| Yersinia pestis KIM | y2044 | -69 | 3.9 | AGATGTGATCTCGATTAGATCA |
| Serratia proteamaculans 568 | Spro_2674 | -135 | 3.8 | TTTTTTGATTCAGATCAATCCT |
| Edwardsiella tarda EIB202 | ETAE_1528 | -161 | 3.9 | CTGATTGATGTCTATCAAATTT |
| Proteus mirabilis HI4320 | PMI1350 | -168 | 4.6 | AAATTTGATGTGGATCAATTAT |
| -85 | 3.8 | AGTTGTGATCGGCATTAGATCA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2478 | -164 | 4.3 | AACTTTGATTTGGATCAAGTTA |
| -39 | 3.8 | TATTTTGATTGACTTTAAATCA | ||
|
Position: -117
Score: 4.4 Sequence: TTTCGTGCTTAATATCACAGAT
Locus tag: PAU_02182
|
||||
| PAU_02182 | -117 | 4.4 | TTTCGTGCTTAATATCACAGAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mlc | ||||
| Ortholog function: ROK family transcriptional regulatory protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1594 | -108 | 4.1 | AAATGTGCTGTTAATCACATGC |
| Salmonella typhimurium LT2 | STM1488 | -65 | 3.8 | AGTATTGAAGTGTTTCACCATA |
| Citrobacter koseri ATCC BAA-895 | CKO_01593 | -107 | 3.6 | AAaTGTGcagTAaATCACAcgg |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01574 | -104 | 3.8 | AAATGTGCGGTAAATCACAAGG |
| Enterobacter sp. 638 | Ent638_1919 | -107 | 3.8 | AAATGTGCGGTAAATCACAAGG |
| Erwinia amylovora ATCC 49946 | EAM_1710 | -143 | 4.9 | TTATGTGCTGTAAATCACATTC |
| Yersinia pestis KIM | y2110 | -146 | 4.8 | TTATGTGCAGCAAATCACATAA |
| Serratia proteamaculans 568 | Spro_2283 | -111 | 4.8 | ATTTGTGCAGCAAATCACATAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2258 | -226 | 4.4 | ATATGCGCGCTAAATCACATAA |
| Edwardsiella tarda EIB202 | ETAE_1713 | -113 | 4.8 | ATTTGTGCACTTAATCACATAA |
| Proteus mirabilis HI4320 | PMI1292 | -126 | 4.7 | ATATGTGCTTTCCATCACGATT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2226 | -119 | 4.8 | TTTCGTGCTGAATATCACATAT |
|
Position: -137
Score: 4 Sequence: ATTAGTGATGTGCATCTCAACC
Locus tag: PAU_02433
|
||||
| PAU_02433 | -137 | 4 | ATTAGTGATGTGCATCTCAACC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fadD | ||||
| Ortholog function: long-chain-fatty-acid--CoA ligase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1805 | -131 | 3.7 | AATAGTGACGCGCTTCGCAACC |
| Salmonella typhimurium LT2 | STM1818 | -131 | 3.7 | AATAGTGACGCGCTTCGCAACC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02322 | -97 | 3.7 | AATAGTGACGCGCTTCGCAACC |
| Erwinia amylovora ATCC 49946 | EAM_1956 | -130 | 3.9 | TTTAGTGATGCGCTTCGCAACC |
| Yersinia pestis KIM | y2236 | -80 | 4.1 | AATAGTGATGTATATCTCAACC |
| Serratia proteamaculans 568 | Spro_2760 | -99 | 3.9 | ATTAGTGACGTACATCGCAACC |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2372 | -132 | 3.8 | ATTAGTGATCGTTCTCGCAACC |
| -75 | 3.7 | TAAAATAATGTTAATAACAATA | ||
| Proteus mirabilis HI4320 | PMI1166 | -121 | 4.4 | TTTAGTGATACACTTCGCATCT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2134 | -288 | 3.8 | AAATGCTATCTTAAGCAAAAAA |
| -137 | 4 | ATTAGTGATGTGTATCTCAACC | ||
|
Position: -234
Score: 3.8 Sequence: TAATCTAATATTTTTCATAAAA
Locus tag: PAU_02443
|
||||
| PAU_02443 | -234 | 3.8 | TAATCTAATATTTTTCATAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: zwf | ||||
| Ortholog function: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1852 | -208 | 3.9 | TAACATGATCAGTGTCAGATTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02367 | -225 | 3.8 | TTACATGATCAGGGTCGTATTT |
| Yersinia pestis KIM | y2244 | -231 | 4.1 | TAATATGACCTGTGTCTAATTT |
| Proteus mirabilis HI4320 | PMI1157 | -225 | 3.7 | AAGTATGACCTGTGTCTAACTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2122 | -234 | 4.2 | TAATTTAATGTTTTTCATAAAA |
|
Position: -253
Score: 4 Sequence: AGTTGTGATCGTGCCCGCAATG
Locus tag: PAU_02530
|
||||
| PAU_02530 | -253 | 4 | AGTTGTGATCGTGCCCGCAATG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ychH | ||||
| Ortholog function: membrane protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1205 | -105 | 4.5 | AATTGTGATCACGCCCGCACAT |
| Salmonella typhimurium LT2 | STM1782 | -105 | 4.4 | ATTTGTGATCGCACCCGCACTT |
| Citrobacter koseri ATCC BAA-895 | CKO_01260 | -104 | 4.1 | AATTGTGATCGCCCACGCACTC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02241 | -100 | 4.1 | TAATGTGATCGTGGACGCACTC |
| Enterobacter sp. 638 | Ent638_2343 | -119 | 3.7 | TGTTGTGACGAGAGTCATTAAT |
| -101 | 4 | TAATGTGATCATTCACGCAACT | ||
| Erwinia amylovora ATCC 49946 | EAM_1581 | -97 | 3.9 | AAATGTGATCGCTGACTCATCA |
| Yersinia pestis KIM | y2296 | -145 | 3.9 | AGTTGTGATCGCTACCGCAACA |
| Serratia proteamaculans 568 | Spro_1985 | -117 | 4.2 | ATTTGTGATCGCCTACGCAATC |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2185 | -275 | 3.6 | TAGCGTGATTATGAGAACGCTA |
| -117 | 3.8 | ATCTGTGATCCCTCCCGCAATC | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2065 | -189 | 4.1 | AGTTGTGATCGTGTCCGCAATG |
|
Position: -198
Score: 4.2 Sequence: TCTGGTGATATTAGTCACAAAT
Position: -148
Score: 4.7 Sequence: AATTGTGATAGCGCTATCATTT
Locus tag: PAU_02592
|
||||
| PAU_02592 | -198 | 4.2 | TCTGGTGATATTAGTCACAAAT | |
| -148 | 4.7 | AATTGTGATAGCGCTATCATTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: CKO_00488 | ||||
| Ortholog function: LacI-family transcriptional regulator | ||||
| Salmonella typhimurium LT2 | STM2345 | -192 | 4 | AGCTGCGATCGTTATCACAAAG |
| -143 | 4.6 | AATTGTGATAGCGCTATCAAAT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00488 | -192 | 4.6 | ATCTGTGATCATATTCACAAAG |
| -143 | 4.5 | ATATGTGATAGCGCTATCAAAA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01748 | -155 | 4.2 | AACTGTGATACACCTCCCAAAG |
| -53 | 3.6 | AGTTATAATGCGATTCGCAGAT | ||
| Enterobacter sp. 638 | Ent638_2847 | -178 | 4.1 | AGCTGCGATCAAGATCACAAAG |
| -129 | 4.6 | AATTGTGATAGCGCTATCAAAT | ||
| Yersinia pestis KIM | y1619 | -208 | 5.4 | TAATGTGATCTGGATCTCAATT |
| -158 | 4.6 | ATTTGTGATAGCGCTATCATTT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3772 | -246 | 4.5 | TAATGTGATTAACATCCAAAAA |
| -196 | 4 | AACTGTGACCGGCTTAGCACAA | ||
| Edwardsiella tarda EIB202 | ETAE_3025 | -210 | 4.3 | TTTCGTGATAGCGCTATCATTT |
| Proteus mirabilis HI4320 | PMI1778 | -139 | 4.2 | AATTGTGATAGCGCTATTATTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1978 | -195 | 3.8 | GCTAGTGATATTAGTCACAAAT |
| -145 | 4.7 | AATTGTGATAGCGCTATCATTT | ||
|
Position: -139
Score: 4.3 Sequence: AATTTTGATCAGTATCACTGAA
Locus tag: PAU_02599
|
||||
| PAU_02599 | -139 | 4.3 | AATTTTGATCAGTATCACTGAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dsdX | ||||
| Ortholog function: DsdX permease | ||||
| Proteus mirabilis HI4320 | PMI0186 | -126 | 4.4 | ATTTGTGCATCTGATCACCTAT |
| -44 | 3.6 | ATATTCAATATGTTTAACAATA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1969 | -169 | 4.9 | TTTAGTGATTTAAATCGCAAAT |
| -139 | 4.4 | AATTTTGATCGGTATCACTGAA | ||
|
Position: -125
Score: 4.4 Sequence: TTCAGTGATACTGATCAAAATT
Locus tag: PAU_02600
|
||||
| PAU_02600 | -125 | 4.4 | TTCAGTGATACTGATCAAAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dsdC | ||||
| Ortholog function: DNA-binding transcriptional dual regulator | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2364 | -115 | 3.9 | TGGAGTGATTTACATCTAAAAA |
| -85 | 4.6 | AATTGAGATATGGTTCACTTTA | ||
| Salmonella typhimurium LT2 | STM3800 | -142 | 3.8 | TGATGTAAATTGAATCAACTAT |
| -124 | 4.5 | CTATGTGATTTCCATCTAATAT | ||
| -94 | 4.2 | TTTTGCGATATGGTTCATTTTA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00019 | -32 | 3.9 | AAGGGTGATTTGCATCCAATAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04079 | -125 | 3.9 | AAAGGTGATTTAGCTCTAAAAG |
| -95 | 4.2 | AAATATGCTATGGGTCAAATTA | ||
| Serratia proteamaculans 568 | Spro_2451 | -76 | 3.6 | TTTAGCGACATGGGTCAACTTT |
| Proteus mirabilis HI4320 | PMI0184 | -199 | 3.6 | TATTGTTAAACATATTGAATAT |
| -117 | 4.4 | ATAGGTGATCAGATGCACAAAT | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1968 | -124 | 4.4 | TTCAGTGATACCGATCAAAATT |
| -94 | 4.5 | ATTTGCGATTTAAATCACTAAA | ||
|
Position: -107
Score: 4.5 Sequence: TATAGTAATTTGTGTCACAATA
Locus tag: PAU_02603
|
||||
| PAU_02603 | -107 | 4.5 | TATAGTAATTTGTGTCACAATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cycA2 | ||||
| Ortholog function: D-alanine/D-serine/glycine permease | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4208 | -198 | 4.7 | TTTTGTGAGCTGTTTCGCGTTA |
| Salmonella typhimurium LT2 | STM4398 | -193 | 5.1 | TTTTGTGAGCTAATTCGCATTA |
| -170 | 3.9 | CAAAGTGATATAACACTCATTT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03624 | -199 | 4.4 | TTTTGTGAGCTAATTCGCGTTG |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04601 | -192 | 4.7 | TTTTGTGAGCTATTTCGCGTTA |
| -169 | 3.8 | ATGAGTGATATAACACTCACTT | ||
| Enterobacter sp. 638 | Ent638_0378 | -201 | 4.2 | TTTTGTGAGCTGTTTTGCATTG |
| Yersinia pestis KIM | y2447 | -199 | 4.5 | CACTGTGATGTACTTAACAAAA |
| -118 | 3.7 | TAATATTAAATTATTCGCAAAT | ||
| Proteus mirabilis HI4320 | PMI1614 | -102 | 4.4 | TTCTGAGATTTGTGTCACAATA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1965 | -102 | 4.6 | TATAGTAATCTGTGTCACAATA |
|
Position: -142
Score: 4.4 Sequence: AAATGTGATTCAGCAAACGTTT
Locus tag: PAU_02605
|
||||
| PAU_02605 | -142 | 4.4 | AAATGTGATTCAGCAAACGTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: putP | ||||
| Ortholog function: Proline/sodium symporter PutP (TC 2.A.21.2.1) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1015 | -207 | 3.6 | AAATGTGAGAGAGTGCAACCTG |
| Salmonella typhimurium LT2 | STM1125 | -204 | 3.6 | AAATGTGAGAGAGTGCAACCTG |
| Citrobacter koseri ATCC BAA-895 | CKO_02041 | -80 | 3.6 | AAATGTGAGAGAGTGCAACCTG |
| Enterobacter sp. 638 | Ent638_1542 | -249 | 3.7 | TTTTATGCGGCACTTAACACTT |
| Serratia proteamaculans 568 | Spro_2930 | -211 | 3.9 | AAATGTGACGCAGGGTAAACTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4218 | -130 | 3.7 | TTGTGCAACCTTGTTAACAAAT |
| Proteus mirabilis HI4320 | PMI1615 | -220 | 3.8 | TAGTGTGAAGTTACATACAAAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1958 | -243 | 4.4 | AAATGTGATTCAGTAAACGTTT |
|
Position: -340
Score: 4.8 Sequence: TTTTGTGAGTCATGTCACATAG
Locus tag: PAU_02691
|
||||
| PAU_02691 | -340 | 4.8 | TTTTGTGAGTCATGTCACATAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: flhD | ||||
| Ortholog function: DNA-binding transcriptional dual regulator with FlhC | ||||
| Proteus mirabilis HI4320 | PMI1672 | -158 | 3.6 | TGAAATGATCGTAATCAAGTAA |
|
Position: -117
Score: 4.3 Sequence: ATTTGCGAAGCTGTTCGCATTA
Locus tag: PAU_02820
|
||||
| PAU_02820 | -117 | 4.3 | ATTTGCGAAGCTGTTCGCATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ycaI | ||||
| Ortholog function: hypothetical protein | ||||
| Salmonella typhimurium LT2 | STM0983 | -120 | 4.1 | TTTTTTGCTGCGTCTTACATTT |
| Proteus mirabilis HI4320 | PMI0717 | -212 | 3.6 | TTACGTGATCTTTCTCTATTTG |
| -152 | 3.6 | TTTTTAGAACAACTTCGCAAAA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1629 | -230 | 3.7 | ATTTGATATCAGTATCGCAATG |
| -152 | 4.4 | ATTTGCGAAGCTGTTCGCATAT | ||
|
Position: -50
Score: 3.3 Sequence: AAAACTGACTCACTTAATAATT
Locus tag: PAU_02830
|
||||
| PAU_02830 | -50 | 3.3 | AAAACTGACTCACTTAATAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aroA | ||||
| Ortholog function: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0908 | -155 | 4.8 | TTGTGTGATGCAAGCCACATTT |
| Salmonella typhimurium LT2 | STM0978 | -142 | 4.2 | TTGTGTGACGCATGCCGCATTT |
| Citrobacter koseri ATCC BAA-895 | CKO_02164 | -171 | 4.6 | TTGTGTGACGTAGCGCGCATTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00936 | -145 | 3.7 | TTGTGTGACGGCGGCCGCGTTT |
| Enterobacter sp. 638 | Ent638_1428 | -119 | 4.4 | TTGTGTGACGGTGGACACATTT |
| Yersinia pestis KIM | y2783 | -39 | 3.3 | TATAACGATGGCAATCTCAGTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2593 | -78 | 3.5 | AAGTATGACGGGTATAAAAATG |
| Edwardsiella tarda EIB202 | ETAE_2177 | -104 | 3.8 | TATAGTGACAGCGCTCAATAAA |
|
Position: -87
Score: 4.1 Sequence: GATTATGATCTATATCAAATTC
Locus tag: PAU_02836
|
||||
| PAU_02836 | -87 | 4.1 | GATTATGATCTATATCAAATTC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: focA | ||||
| Ortholog function: formate transporter | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0904 | -156 | 3.6 | TATTTTTATTTGGATAATCAAA |
| -78 | 3.8 | AGATATGATCTATATCAATTTC | ||
| Salmonella typhimurium LT2 | STM0974 | -78 | 4.4 | AGATATGATCTATATCAAATTC |
| Citrobacter koseri ATCC BAA-895 | CKO_02167 | -198 | 3.6 | TATTTTTATTTGGATAATCAAA |
| -120 | 4.4 | AGATATGATCTATATCAAATTC | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00932 | -121 | 3.8 | AGATATGATCTATATCAATTTC |
| Enterobacter sp. 638 | Ent638_1424 | -78 | 3.8 | AGATATGATCTATATCAATTTC |
| Yersinia pestis KIM | y2789 | -84 | 4 | CAATATGATCCATATCAATTTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2596 | -79 | 4.5 | CAATATGATCCACATCAAATTT |
| Proteus mirabilis HI4320 | PMI0706 | -188 | 4 | TTTTTTGATAAAATTTAAAAAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1614 | -88 | 4.7 | AATTATGATCTATATCAAATTC |
|
Position: -172
Score: 4.6 Sequence: AAATTTGATATAGATAACGATA
Locus tag: PAU_02852
|
||||
| PAU_02852 | -172 | 4.6 | AAATTTGATATAGATAACGATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: clpS | ||||
| Ortholog function: ATP-dependent Clp protease adaptor protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0881 | -164 | 4 | AAATTTGAAGCAGTTAACGCTA |
| Salmonella typhimurium LT2 | STM0944 | -164 | 4 | AAATTTGAAGCAGTTAACGCTA |
| -104 | 3.6 | AGATGTTAGTTATCTATCAATT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_02199 | -164 | 4 | AAATTTGAAGCAGTTAACGCTA |
| -135 | 4.2 | TAATGTGACAGATGTCGCGGAT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00914 | -167 | 4 | AAATTTGAAGCAGTTAACGCTA |
| -77 | 4.3 | ATTTGTGATGAGCATAACCTCT | ||
| Enterobacter sp. 638 | Ent638_1398 | -161 | 3.9 | ATTTTTGAAGCAGTTAACGCTA |
| -132 | 3.8 | GAATGTGACAGATATCGCGGAT | ||
| Erwinia amylovora ATCC 49946 | EAM_1320 | -161 | 4 | AAATTTGAAGCAGTTAACGCTA |
| -132 | 4.5 | TTTTGTGATAGAGGTCGCTATT | ||
| Serratia proteamaculans 568 | Spro_1673 | -176 | 3.6 | AAGTTTGAAGCAGGTAACGCTA |
| Edwardsiella tarda EIB202 | ETAE_2208 | -164 | 3.8 | AAGTTTGAGGCAGTTAACGCAA |
| -144 | 3.6 | AATTGTGCGGCAGTGCGCTTTT | ||
| Proteus mirabilis HI4320 | PMI0689 | -268 | 3.7 | TGTCTTTATTTACTTAACATTA |
| -148 | 4.1 | AACTTTGATGTAGCTAACGCTT | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1593 | -170 | 4.3 | AAGTTTGATATAGATAACGATA |
|
Position: -195
Score: 4.7 Sequence: TATCGTTATCTATATCAAATTT
Locus tag: PAU_02853
|
||||
| PAU_02853 | -195 | 4.7 | TATCGTTATCTATATCAAATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cspD | ||||
| Ortholog function: cold shock-like protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0880 | -180 | 4 | TAGCGTTAACTGCTTCAAATTT |
| Salmonella typhimurium LT2 | STM0943 | -181 | 4 | TAGCGTTAACTGCTTCAAATTT |
| Citrobacter koseri ATCC BAA-895 | CKO_02200 | -210 | 3.9 | ATCCGCGACATCTGTCACATTA |
| -181 | 4 | TAGCGTTAACTGCTTCAAATTT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00913 | -270 | 4.2 | AGAGGTTATGCTCATCACAAAT |
| -180 | 4 | TAGCGTTAACTGCTTCAAATTT | ||
| Enterobacter sp. 638 | Ent638_1397 | -209 | 3.8 | ATCCGCGATATCTGTCACATTC |
| -180 | 3.9 | TAGCGTTAACTGCTTCAAAAAT | ||
| Serratia proteamaculans 568 | Spro_1672 | -205 | 4 | TAGCGTTACCTGCTTCAAACTT |
| -49 | 3.9 | TTCAGTTATTCATCTCACCTAA | ||
| Proteus mirabilis HI4320 | PMI0688 | -163 | 3.8 | AAGCGTTAGCTACATCAAAGTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1592 | -194 | 4.6 | TATCGTTATCTATATCAAACTT |
|
Position: -333
Score: 4 Sequence: TAATTTGACCTCATTAAAACTA
Position: -247
Score: 3.6 Sequence: GTTTGAGACTATGATCACAGTA
Locus tag: PAU_02866
|
||||
| PAU_02866 | -333 | 4 | TAATTTGACCTCATTAAAACTA | |
| -247 | 3.6 | GTTTGAGACTATGATCACAGTA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sdaC | ||||
| Ortholog function: Serine transporter | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2796 | -179 | 4.2 | ATTTGAGATCAAGATCACTGAT |
| Salmonella typhimurium LT2 | STM2970 | -176 | 4.2 | ATTTGAGATCGGGATCACTGAT |
| Citrobacter koseri ATCC BAA-895 | CKO_04152 | -176 | 4.1 | ATTTGGGATCGCGATCACTGAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03139 | -158 | 4.2 | ATTTGAGATCGCGATCACTGAT |
| Enterobacter sp. 638 | Ent638_3249 | -176 | 4.1 | ATTTGGGATCAGGATCACTGAT |
| Erwinia amylovora ATCC 49946 | EAM_1294 | -300 | 3.6 | ATTTGTTAAAAATCGCAAAAAA |
| -180 | 3.9 | AAATGTGATTCCGATCACCGGC | ||
| Yersinia pestis KIM | y2862 | -286 | 4.3 | AATTGAGATCACGATCACGGTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3158 | -195 | 3.7 | TTCTGTGATCGCCTCAATATTA |
| Proteus mirabilis HI4320 | PMI0672 | -283 | 4.3 | ATTTGAGATGGTGATCACGGTA |
|
Position: -41
Score: 4.2 Sequence: ACATGTGATCACATTAACAGAT
Locus tag: PAU_02885
|
||||
| PAU_02885 | -41 | 4.2 | ACATGTGATCACATTAACAGAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gnd | ||||
| Ortholog function: hypothetical protein | ||||
| Enterobacter sp. 638 | Ent638_2642 | -116 | 4 | CAGTGTGACATAGATCAGCAAA |
| Yersinia pestis KIM | y2629 | -78 | 3.8 | AGTTGTGCTATCTATCGCACCA |
| -76 | 3.6 | TTGTGCTATCTATCGCACCAAT | ||
| Serratia proteamaculans 568 | Spro_1608 | -297 | 3.7 | ATGCTTGAAGTGGCTCTCACTT |
| -72 | 4.2 | ACATGTGTGCCACATCACAAAA | ||
| Proteus mirabilis HI4320 | PMI0655 | -71 | 4.7 | CTATGTGATCAGGTTAACAAAT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1560 | -74 | 4.4 | ACATGTGATCACATTAACAAAT |
|
Position: -32
Score: 4.7 Sequence: ATCTGTGATTTATGGCACATTT
Locus tag: PAU_02893
|
||||
| PAU_02893 | -32 | 4.7 | ATCTGTGATTTATGGCACATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yohJ | ||||
| Ortholog function: LrgA family protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2141 | -68 | 4.9 | TAATGTGATCGGTAGCACGTTT |
| Salmonella typhimurium LT2 | STM2181 | -68 | 4.6 | TGATGTGATCGGTAGCACGTTT |
| Citrobacter koseri ATCC BAA-895 | CKO_00648 | -68 | 4.6 | TGATGTGATCGGTAGCACGTTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02582 | -68 | 5 | TGATGTGATCGGTAGCACATTT |
| Enterobacter sp. 638 | Ent638_2744 | -68 | 4.7 | TGATGTGATCCGTAGCACGTTT |
| Yersinia pestis KIM | y2654 | -32 | 4.7 | TAGTGTGATGGGTAGCACAGAA |
| Serratia proteamaculans 568 | Spro_1570 | -62 | 4.3 | ATTTGTGGCGGAGGTCACAGTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2828 | -69 | 4.5 | ATTCGTGATCTGTGGCACGTAA |
| Edwardsiella tarda EIB202 | ETAE_1164 | -68 | 4.9 | TGATGTGATCAGTAGCACATTT |
| Proteus mirabilis HI4320 | PMI0645 | -71 | 5.2 | TATTGTGATCCATAGCACACTT |
|
Position: -75
Score: 4.6 Sequence: CTATATGATATTACTCACATTA
Locus tag: PAU_02895
|
||||
| PAU_02895 | -75 | 4.6 | CTATATGATATTACTCACATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cdd | ||||
| Ortholog function: cytidine deaminase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2143 | -128 | 4.3 | ATTTGCGATGCGTCGCGCATTT |
| -78 | 5.1 | TAATGAGATTCAGATCACATAT | ||
| Salmonella typhimurium LT2 | STM2183 | -128 | 4.2 | ATTTGCGATACGTCGCGCATTT |
| -78 | 4.8 | CAATGAGATTTAGATCACATAT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00646 | -128 | 4.3 | ATTTGCGATGCGTCGCGCATTT |
| -78 | 4.8 | CAATGAGATTTGGATCACATAT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02584 | -78 | 4.4 | GAATGAGATATTCATCACATAT |
| Enterobacter sp. 638 | Ent638_2746 | -127 | 4.2 | ATTTGCGATGCGTCGCGCAATT |
| -77 | 4.9 | TAATGAGAACTGGATCACATAT | ||
| Erwinia amylovora ATCC 49946 | EAM_2202 | -124 | 3.9 | ACTTGCGATAAGTCTCTCATTT |
| -104 | 4.1 | TTTGGTGATGCATTTCATTTAT | ||
| -74 | 4.7 | TAGAGCGATTTAGATCACATAT | ||
| Yersinia pestis KIM | y2657 | -75 | 5 | TAATGAGATATAAATCACAATT |
| Serratia proteamaculans 568 | Spro_1568 | -127 | 4.1 | ACTTGCGATACATCTCGCAATT |
| -77 | 4.5 | TAAAGAGATTTACATCACACTT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2830 | -130 | 4.6 | AATTGAGATACATCTCGCATTT |
| -79 | 4.5 | TAAAGAGATTCCGATCACAATT | ||
| Edwardsiella tarda EIB202 | ETAE_1162 | -76 | 4.9 | AAAAGTGATTATTATCACAAAT |
| Proteus mirabilis HI4320 | PMI0643 | -132 | 4.4 | ATTTGAGATGTATCTCCCAATT |
| -82 | 5.1 | AAATATGATTTTAATCACATAT | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1547 | -75 | 4.7 | CTATATGATATTTATCACATTA |
|
Position: -350
Score: 4.2 Sequence: AATTCTAATCTGAATCACGTAA
Locus tag: PAU_02967
|
||||
| PAU_02967 | -350 | 4.2 | AATTCTAATCTGAATCACGTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cydA | ||||
| Ortholog function: cytochrome d terminal oxidase, polypeptide subunit I | ||||
| Proteus mirabilis HI4320 | PMI0573 | -247 | 3.8 | AAATATGCTGTTACTAACCTAA |
|
Position: -255
Score: 4.6 Sequence: AATCGTGATCTTAATCACTGTT
Position: -195
Score: 3.9 Sequence: AATAATAATGTGAAGCACATAT
Locus tag: PAU_02978
|
||||
| PAU_02978 | -255 | 4.6 | AATCGTGATCTTAATCACTGTT | |
| -195 | 3.9 | AATAATAATGTGAAGCACATAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sdhC | ||||
| Ortholog function: Succinate dehydrogenase cytochrome b-556 subunit | ||||
| Enterobacter sp. 638 | Ent638_1222 | -295 | 4.2 | TATCGTGACTGTGATCACTGTT |
| Erwinia amylovora ATCC 49946 | EAM_1168 | -249 | 4.4 | AAGTGTGATTTTTGTCACTGTT |
| -190 | 3.6 | TAATGAGATTGTGATCCACTTA | ||
| Yersinia pestis KIM | y3071 | -254 | 4.5 | AATCGTGATCCTAATCACTGTT |
| Serratia proteamaculans 568 | Spro_1263 | -253 | 4.3 | ATCCGTGATCTAAATCACTGTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1357 | -265 | 4.7 | ATTCGTGATCTAAATCACTGTT |
| Edwardsiella tarda EIB202 | ETAE_2588 | -261 | 3.7 | ATGCGTGACCGTTGTCACTGTT |
| Proteus mirabilis HI4320 | PMI0565 | -264 | 4.3 | AAAAGTGATCCCTCTCACTGTT |
|
Position: -179
Score: 4.9 Sequence: TTATGTGATCTATATCTTATAA
Locus tag: PAU_03012
|
||||
| PAU_03012 | -179 | 4.9 | TTATGTGATCTATATCTTATAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dctA | ||||
| Ortholog function: C4-dicarboxylate transport protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3528 | -143 | 4.1 | TTGTGCGAGCCAGCTCAAACTT |
| Salmonella typhimurium LT2 | STM3614 | -145 | 4.1 | TTGTGCGAGCCAGCTCAAACTT |
| Citrobacter koseri ATCC BAA-895 | CKO_04970 | -145 | 4 | TTGTGCGAGCCAGCTCAAAGTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03878 | -143 | 3.9 | TTGTGCGAGTCAGCTCAAAGAT |
| Erwinia amylovora ATCC 49946 | EAM_3380 | -134 | 4.4 | TGAAGTGATTCAGCTCATAAAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4362 | -157 | 3.8 | TGACGTGATTCAGCTCTTGTTT |
| Edwardsiella tarda EIB202 | ETAE_3379 | -155 | 3.6 | TTATGCGTTTCAGCTCATAGAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3205 | -176 | 4.9 | TTATGTGATCTATATCTTAAAA |
|
Position: -148
Score: 5.2 Sequence: TATAGTGATTCTCATCACATAT
Locus tag: PAU_03088
|
||||
| PAU_03088 | -148 | 5.2 | TATAGTGATTCTCATCACATAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nagE | ||||
| Ortholog function: PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69) | ||||
| Enterobacter sp. 638 | Ent638_1194 | -162 | 4.4 | TTTGGTGACAAAACTCACAAAA |
| -128 | 3.6 | ATTTGCGATACGAATTAATTTT | ||
| Yersinia pestis KIM | y1203 | -206 | 4.9 | TTTGGTGATATTTATCACAAAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1327 | -202 | 5 | TTTGGTGATTTTTATCACATAA |
| Edwardsiella tarda EIB202 | ETAE_2616 | -157 | 4.8 | ATTGGTGATAGTTATCACAAAT |
| Proteus mirabilis HI4320 | PMI0455 | -150 | 4.6 | ATAGGTGACTTTAATCACAAAT |
|
Position: -210
Score: 4.8 Sequence: ATATGTGATGAGAATCACTATA
Locus tag: PAU_03089
|
||||
| PAU_03089 | -210 | 4.8 | ATATGTGATGAGAATCACTATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nagB | ||||
| Ortholog function: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0678 | -212 | 4.3 | AAATTTAATTCGTATCGCAAAT |
| -178 | 4.6 | TTTTGTGAGTTTTGTCACCAAA | ||
| Salmonella typhimurium LT2 | STM0684 | -205 | 3.7 | AAAATTAATTCGCCTCGCAAAT |
| -171 | 4.7 | TTTTGTGATTATAATCACTAAA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_02486 | -218 | 3.8 | AAAATTAATTCGTATCGCAAAT |
| -184 | 5.2 | TTTTGTGATTTGAATCACCAAA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00699 | -217 | 3.8 | AAAATTAATTCGTATCGCAAAT |
| -183 | 5 | TTTTGTGATAATTATCACCAAA | ||
| Enterobacter sp. 638 | Ent638_1193 | -218 | 3.8 | AAAATTAATTCGTATCGCAAAT |
| -184 | 4.6 | TTTTGTGAGTTTTGTCACCAAA | ||
| Erwinia amylovora ATCC 49946 | EAM_1147 | -195 | 4.9 | ATATGTGATTAAAGTCACCTTA |
| Yersinia pestis KIM | y1202 | -214 | 5.1 | TTTTGTGATAAATATCACCAAA |
| Serratia proteamaculans 568 | Spro_1227 | -194 | 5.3 | TTTTGTGATTTACATCACCAAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1326 | -180 | 5 | TTATGTGATAAAAATCACCAAA |
| Edwardsiella tarda EIB202 | ETAE_2617 | -190 | 5 | ATTTGTGATAACTATCACCAAT |
| Proteus mirabilis HI4320 | PMI0454 | -217 | 4.9 | ATTTGTGATTAAAGTCACCTAT |
|
Position: -4
Score: 4.4 Sequence: TTTTGTGTCTTATTTCACGTTA
Locus tag: PAU_03170
|
||||
| PAU_03170 | -4 | 4.4 | TTTTGTGTCTTATTTCACGTTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cspE | ||||
| Ortholog function: cold shock protein E | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0623 | -114 | 4 | TAACGCGACTTTTATCACTTTT |
| Salmonella typhimurium LT2 | STM0629 | -114 | 4.3 | TAACGCGATATTTATCACTTTT |
| Citrobacter koseri ATCC BAA-895 | CKO_02534 | -21 | 4.3 | TAACGCGATATTTATCACTTTT |
| Enterobacter sp. 638 | Ent638_1159 | -114 | 3.8 | TAACGCGACTTTTGTCACTTTT |
| Erwinia amylovora ATCC 49946 | EAM_1116 | -113 | 3.6 | AAAAACGATATTTATCACTTTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1294 | -113 | 3.9 | TTTAGCGACTTTTATCACTTTT |
|
Position: -36
Score: 5 Sequence: AAAAGTGATTTAAATCACCTTT
Locus tag: PAU_03194
|
||||
| PAU_03194 | -36 | 5 | AAAAGTGATTTAAATCACCTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: raiA | ||||
| Ortholog function: stationary phase translation inhibitor and ribosome stability factor | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2597 | -81 | 4.8 | TTATGAGATTTTCATCACACAT |
| Citrobacter koseri ATCC BAA-895 | CKO_03918 | -40 | 5.2 | TAATGTGATTTAAATCACGCTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02919 | -88 | 5.6 | AAATGTGATTTATATCACACAT |
| Enterobacter sp. 638 | Ent638_3076 | -81 | 5.4 | ATGTGTGATTTAGATCACACAT |
| Erwinia amylovora ATCC 49946 | EAM_2617 | -83 | 5.2 | AAATGTGATTTCAATCACGATT |
| Serratia proteamaculans 568 | Spro_0882 | -83 | 4.8 | ATACGTGATTTTCATCACGCAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3349 | -86 | 4 | AAAAGCGATCAATCTCACGCTT |
| Edwardsiella tarda EIB202 | ETAE_2834 | -82 | 3.8 | ATCCGTGATTTTCCTCTCACAC |
| Proteus mirabilis HI4320 | PMI0391 | -82 | 4.6 | AAAAGTGATCTTGATCATGTTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1266 | -87 | 5.1 | AATAGTGATTTAGATCACCTTT |
|
Position: -114
Score: 3.9 Sequence: TATTTTGGTTTTATTTACATAT
Locus tag: PAU_03199
|
||||
| PAU_03199 | -114 | 3.9 | TATTTTGGTTTTATTTACATAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aroF | ||||
| Ortholog function: phospho-2-dehydro-3-deoxyheptonate aldolase | ||||
| Salmonella typhimurium LT2 | STM2670 | -71 | 3.9 | TTTTGTGGTATGGTTTAAACAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02923 | -159 | 3.8 | TATTGTTATACGCATCGCGCCA |
| Edwardsiella tarda EIB202 | ETAE_2837 | -117 | 3.8 | ATGTACGATATTGTTTACATAT |
| Proteus mirabilis HI4320 | PMI0387 | -214 | 4.5 | TTATTTTATCTTAGTCACATTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1262 | -262 | 3.6 | TGTTTTGATATTGATTTTATTT |
|
Position: -230
Score: 3.8 Sequence: TCAAGTGATTTACTTCAAGCAA
Position: -129
Score: 3.6 Sequence: TTTTTTGATCTTATAATCACTT
Locus tag: PAU_03258
|
||||
| PAU_03258 | -230 | 3.8 | TCAAGTGATTTACTTCAAGCAA | |
| -129 | 3.6 | TTTTTTGATCTTATAATCACTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yafK | ||||
| Ortholog function: hypothetical protein | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00238 | -208 | 3.7 | AAATGCGAGCTATTGCGCAAAG |
| Yersinia pestis KIM | y0949 | -217 | 3.7 | TTATTTTATACAAAACATATAT |
| Serratia proteamaculans 568 | Spro_0952 | -136 | 4.2 | TTTTTTTATACACAACACATAT |
| Proteus mirabilis HI4320 | PMI0351 | -297 | 3.7 | AATTGTTACTATTTTCTCTTAT |
| -228 | 3.7 | TCGAGTGATTTAGCTCAAGCAA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1195 | -232 | 3.9 | TCAAGTGATTTAGTTCAAGCAA |
|
Position: -211
Score: 4.1 Sequence: ACATGTGATTATTGTCCCATTA
Locus tag: PAU_03402
|
||||
| PAU_03402 | -211 | 4.1 | ACATGTGATTATTGTCCCATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ybaY | ||||
| Ortholog function: Glycoprotein-polysaccharide metabolism | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0453 | -101 | 4.3 | ATGCGTGATGTGTGCCACACTT |
| Salmonella typhimurium LT2 | STM0465 | -100 | 3.9 | ATGAGTGACATGTGCCACACTT |
| Citrobacter koseri ATCC BAA-895 | CKO_02705 | -102 | 4 | ATAAGTGAGATATGCCACACTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00416 | -99 | 3.8 | ATCTGAGATCTGTGCCACACTT |
| Enterobacter sp. 638 | Ent638_0921 | -96 | 4.3 | ATAAGTGATATGTGCCACACTT |
|
Position: -83
Score: 3.5 Sequence: TTTAGTTATTTATTTATCATTC
Position: -59
Score: 3.7 Sequence: TAATGGGACAATAATCACATGT
Locus tag: PAU_03403
|
||||
| PAU_03403 | -83 | 3.5 | TTTAGTTATTTATTTATCATTC | |
| -59 | 3.7 | TAATGGGACAATAATCACATGT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: tesB | ||||
| Ortholog function: Acyl-CoA thioesterase II (EC 3.1.2.-) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0452 | -138 | 3.9 | AAGTGTGGCACACATCACGCAT |
| Citrobacter koseri ATCC BAA-895 | CKO_02706 | -135 | 3.9 | AAGTGTGGCATATCTCACTTAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00415 | -139 | 3.8 | AAGTGTGGCACAGATCTCAGAT |
| Enterobacter sp. 638 | Ent638_0920 | -131 | 4 | AAGTGTGGCACATATCACTTAT |
| Yersinia pestis KIM | y1043 | -153 | 3.6 | TAGCGTGCTAATTATAGCATAA |
| Serratia proteamaculans 568 | Spro_1111 | -54 | 3.6 | TGCCGTGATATTCCGCACACTG |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1162 | -154 | 3.7 | TAGTATGATTCAATAAACACAA |
|
Position: -182
Score: 3.6 Sequence: AATAGTTATGGATGAAACATAA
Locus tag: PAU_03414
|
||||
| PAU_03414 | -182 | 3.6 | AATAGTTATGGATGAAACATAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hupB | ||||
| Ortholog function: HU, DNA-binding transcriptional regulator, beta subunit | ||||
| Proteus mirabilis HI4320 | PMI0118 | -216 | 4.9 | AATCGTGATGTGAATCATAATA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3866 | -222 | 3.5 | AATAGTGAATTTTTTCAATAAG |
|
Position: -165
Score: 4.4 Sequence: TTTCATGATATCCATCACATTC
Locus tag: PAU_03625
|
||||
| PAU_03625 | -165 | 4.4 | TTTCATGATATCCATCACATTC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fadH | ||||
| Ortholog function: 2,4-dienoyl-CoA reductase [NADPH] (2,4-dienoyl coenzyme A reductase) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3081 | -112 | 3.9 | CTTTTTGAATCCCATCACAAAC |
| Salmonella typhimurium LT2 | STM3219 | -113 | 4.3 | TTTTTTGAATCCCATCACAATC |
| Citrobacter koseri ATCC BAA-895 | CKO_04487 | -113 | 4.3 | TTTTTTGAATCCCATCACAATC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03510 | -111 | 3.9 | TTCTTTGAATCCCATCACAATC |
| Enterobacter sp. 638 | Ent638_3539 | -111 | 3.9 | ATCTTTGAATCCCATCACATTC |
| Erwinia amylovora ATCC 49946 | EAM_0507 | -169 | 3.8 | AACCGTGACTGAGATCGCTAAA |
| Yersinia pestis KIM | y3589 | -131 | 4 | ATTCATGACGGCTATCACAATC |
| Serratia proteamaculans 568 | Spro_4309 | -126 | 4.2 | ATTCATGACATCTATCACATTC |
| Proteus mirabilis HI4320 | PMI3702 | -213 | 3.8 | TATTATTATATGATTAAAAAAT |
| -103 | 3.8 | TTCCATGATTAAGATCACAACT | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3990 | -161 | 4.3 | TTTCATGACCTTCATCACATTC |
|
Position: -69
Score: 3.8 Sequence: TAAAGATATTAATCTCACAAAT
Locus tag: PAU_03647
|
||||
| PAU_03647 | -69 | 3.8 | TAAAGATATTAATCTCACAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gltB | ||||
| Ortholog function: glutamate synthase, large subunit | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3212 | -199 | 4.2 | AATTTTGCGCTAAAGCACATTT |
| Salmonella typhimurium LT2 | STM3330 | -288 | 3.7 | ATCTGTGCTACAGCACACTTTT |
| Enterobacter sp. 638 | Ent638_3656 | -298 | 3.9 | GATAGTGAGTCAGATCACACTC |
| Edwardsiella tarda EIB202 | ETAE_0527 | -278 | 4.9 | AACTGTGATGCAGCCCACATTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4009 | -241 | 4 | ATATTTGACCTGATTTATATTT |
|
Position: -250
Score: 5.1 Sequence: TATTGTGACGACGGTCACAATT
Locus tag: PAU_03741
|
||||
| PAU_03741 | -250 | 5.1 | TATTGTGACGACGGTCACAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glpT | ||||
| Ortholog function: glycerol-3-phosphate transporter | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2240 | -219 | 3.7 | TTGTTTGATTTCGCGCATATTC |
| -179 | 3.6 | AAACGTGATTTCATGCGTCATT | ||
| -129 | 4.6 | ATGTGTGCGGCAATTCACATTT | ||
| Salmonella typhimurium LT2 | STM2283 | -220 | 3.6 | ATGTTTGATTTCGCGCATAATC |
| -180 | 4.2 | AAACGTGATTTCGTGCGCCTTT | ||
| -131 | 5.2 | ATATGTGCTGTAATTCACATTA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00537 | -221 | 3.6 | TTGTTTGATTTCGCGCATAATC |
| -181 | 4 | AAACGTGATTTCGTGCGCTTTT | ||
| -132 | 4.8 | ATCTGTGCTGTAATTCACATTA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02646 | -218 | 3.8 | TTGTTTGATTTCGAGCATATTC |
| -178 | 4.6 | TTATGTGATTTCGTGCTCACAT | ||
| -128 | 4.5 | AATTGTGCGATGTTTCACAGTA | ||
| Enterobacter sp. 638 | Ent638_2804 | -201 | 3.6 | TTGTTTGATTTCGAACATAATC |
| -161 | 3.8 | AAGCGTGATCTCATGCGCTTAT | ||
| -111 | 4 | ATCTGTGCGTTGATTCACAGTA | ||
| Erwinia amylovora ATCC 49946 | EAM_0195 | -240 | 3.7 | AAACGCGATGCGGTTAACGATG |
| -147 | 3.7 | ATTTGTGCCTCTCTTCACGGTC | ||
| Serratia proteamaculans 568 | Spro_0199 | -249 | 4.5 | GAATGTGATCATAATCACGATT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4166 | -253 | 3.7 | ATGTTTGATAAAGAGCAAAAAC |
| -193 | 4.9 | AAGTGTGATTTGCATCACTAAA | ||
| Edwardsiella tarda EIB202 | ETAE_3116 | -200 | 3.7 | ATATGAGCGATCTCTCACAGTA |
| Proteus mirabilis HI4320 | PMI3591 | -291 | 3.6 | ATGTTTGATAATGAGCAAAAAC |
| -232 | 5.4 | ATATGTGATACTAATCACAAAT | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4119 | -250 | 4.9 | TATTGTGACAATTGTCACAATT |
|
Position: -123
Score: 3.6 Sequence: AATTGTGATACATCATTAACAT
Locus tag: PAU_03742
|
||||
| PAU_03742 | -123 | 3.6 | AATTGTGATACATCATTAACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glpQ | ||||
| Ortholog function: glycerophosphoryl diester phosphodiesterase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2239 | -219 | 3.7 | TTGTTTGATTTCGCGCATATTC |
| -179 | 3.6 | AAACGTGATTTCATGCGTCATT | ||
| -129 | 4.6 | ATGTGTGCGGCAATTCACATTT | ||
| Salmonella typhimurium LT2 | STM2282 | -220 | 3.6 | ATGTTTGATTTCGCGCATAATC |
| -180 | 4.2 | AAACGTGATTTCGTGCGCCTTT | ||
| -131 | 5.2 | ATATGTGCTGTAATTCACATTA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00538 | -221 | 3.6 | TTGTTTGATTTCGCGCATAATC |
| -181 | 4 | AAACGTGATTTCGTGCGCTTTT | ||
| -132 | 4.8 | ATCTGTGCTGTAATTCACATTA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02645 | -218 | 3.8 | TTGTTTGATTTCGAGCATATTC |
| -178 | 4.6 | TTATGTGATTTCGTGCTCACAT | ||
| -128 | 4.5 | AATTGTGCGATGTTTCACAGTA | ||
| Serratia proteamaculans 568 | Spro_0198 | -249 | 4.5 | GAATGTGATCATAATCACGATT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4167 | -253 | 3.7 | ATGTTTGATAAAGAGCAAAAAC |
| -193 | 4.9 | AAGTGTGATTTGCATCACTAAA | ||
| Edwardsiella tarda EIB202 | ETAE_3117 | -200 | 3.7 | ATATGAGCGATCTCTCACAGTA |
| Proteus mirabilis HI4320 | PMI3590 | -291 | 3.6 | ATGTTTGATAATGAGCAAAAAC |
| -232 | 5.4 | ATATGTGATACTAATCACAAAT | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4120 | -250 | 4.9 | TATTGTGACAATTGTCACAATT |
|
Position: -146
Score: 5.5 Sequence: TTTTGTGATTTTAATCACAAAA
Position: -94
Score: 4.6 Sequence: TAAAGTGATATTTATCACTAAA
Locus tag: PAU_03888
|
||||
| PAU_03888 | -146 | 5.5 | TTTTGTGATTTTAATCACAAAA | |
| -94 | 4.6 | TAAAGTGATATTTATCACTAAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: udp | ||||
| Ortholog function: Uridine phosphorylase (EC 2.4.2.3) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3831 | -144 | 5.2 | TTATGTGATTTGCATCACTTTT |
| -92 | 4.2 | CATGGTGATGAGTATCACGAAA | ||
| Salmonella typhimurium LT2 | STM3968 | -144 | 5.1 | TATTGTGATGAACATCACTTTT |
| -92 | 4.1 | CATAGTGATGGCTGTCACGAAA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00173 | -143 | 5.2 | TTATGTGATGTAAATCACTATT |
| -91 | 3.9 | CATGGTGATGAGCGTCACGAAA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04327 | -143 | 5.2 | TAATGTGATGTGTATCACTATT |
| -91 | 4.1 | CTTGGTGACTATCATCACAAAA | ||
| Enterobacter sp. 638 | Ent638_3962 | -143 | 4.7 | TAGTGTGATGCATGTCACTATT |
| Erwinia amylovora ATCC 49946 | EAM_0200 | -143 | 4.6 | AATTGCGACTTGTATCACCTTT |
| -90 | 4 | ATTAAGGATGTTCATCACATAA | ||
| Yersinia pestis KIM | y0444 | -149 | 5.4 | ATGTGTGATTTAAATCACAATT |
| -97 | 4 | CAAGGTGACATAAATCACGAAA | ||
| Serratia proteamaculans 568 | Spro_0244 | -143 | 5.3 | TTTTGTGACTTTAATCACAAAA |
| -125 | 3.7 | AAAAGTTATGTAGATTGCATTC | ||
| -91 | 4.1 | CATAGTGATGGTTGTCACGAAA | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0185 | -197 | 5.1 | AAAAGTGATTTAAGTCACATTT |
| Edwardsiella tarda EIB202 | ETAE_0143 | -148 | 4.7 | TATTGTGAAAATAATCACAGTT |
| Proteus mirabilis HI4320 | PMI3532 | -145 | 5.1 | ATTTGTGATAACTATCACGTTT |
| -93 | 3.6 | ACAGGTGACGTCAATCACTAAA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4417 | -271 | 5.2 | TTTTGTGATTTATATCTCAAAA |
| -219 | 4 | TGAAGTGACATTTATCACTAAA | ||
|
Position: -149
Score: 3.6 Sequence: ATTTTTTATACACATCAGCAAA
Position: -79
Score: 3.6 Sequence: AAAAGAGACTTCAATCACGGAA
Locus tag: PAU_03932
|
||||
| PAU_03932 | -149 | 3.6 | ATTTTTTATACACATCAGCAAA | |
| -79 | 3.6 | AAAAGAGACTTCAATCACGGAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pgi | ||||
| Ortholog function: Glucose-6-phosphate isomerase (EC 5.3.1.9) | ||||
| Salmonella typhimurium LT2 | STM4221 | -61 | 3.7 | TTCTGTGACTGGCGTTACAATC |
| Citrobacter koseri ATCC BAA-895 | CKO_03893 | -61 | 4.1 | TTTTGTGACTGGCGTTACAATC |
| Serratia proteamaculans 568 | Spro_4477 | -80 | 3.7 | AAAAGAGATCATAATCACAGTC |
| Proteus mirabilis HI4320 | PMI2754 | -245 | 3.7 | CAGTGAGATGTTAAACACAGTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4379 | -205 | 3.8 | TGACGCGATGAGAATCATAAAA |
|
Position: -80
Score: 4.7 Sequence: TACTTTGAGCCAGTTCACATTT
Locus tag: PAU_04023
|
||||
| PAU_04023 | -80 | 4.7 | TACTTTGAGCCAGTTCACATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: deaD | ||||
| Ortholog function: ATP-independent RNA helicase | ||||
| Salmonella typhimurium LT2 | STM3280.S | -154 | 3.9 | CTTTTTGATTGCCATCACCTTC |
| -99 | 4.4 | TACTTTGAGCCGGTTCACACTT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_04559 | -103 | 3.9 | CTTTTTGATTGCCATCACCTTC |
| -48 | 4.4 | TACTTTGAGCCGGTTCACACTT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03570 | -154 | 3.8 | TTTTTTGCTTGCCATCACCTTC |
| -99 | 4.4 | TACTTTGAGCCGGTTCACACAT | ||
| Enterobacter sp. 638 | Ent638_3599 | -154 | 4.1 | TCTTATGATTGCCATCACCTTA |
| -99 | 4.4 | TACTTTGAGCCGGTTCACACTT | ||
| Erwinia amylovora ATCC 49946 | EAM_3065 | -99 | 4.8 | TAATTTGAGCCGGTTCACACTT |
| Yersinia pestis KIM | y0696 | -96 | 4.8 | TAATTTGAGCCGGTTCACACTT |
| Serratia proteamaculans 568 | Spro_0495 | -96 | 4.8 | TAATTTGAGCCGGTTCACACTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0718 | -96 | 4.4 | CAATTTGAGCCGGTTCACACTT |
| Edwardsiella tarda EIB202 | ETAE_0411 | -96 | 4.8 | TAATTTGAGCCGGTTCACACTT |
| Proteus mirabilis HI4320 | PMI3424 | -80 | 5 | TAATTTGAGCCAGTTCACATTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4523 | -95 | 5 | TAATTTGAGCCAGTTCACATTT |
|
Position: -99
Score: 3.7 Sequence: TGTTTTGATGATGGTAATAAAA
Locus tag: PAU_04060
|
||||
| PAU_04060 | -99 | 3.7 | TGTTTTGATGATGGTAATAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cysQ | ||||
| Ortholog function: PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4214 | -126 | 3.6 | AACAGTGAAGAATGCCACAATT |
| Salmonella typhimurium LT2 | STM4404 | -144 | 3.9 | TTTTTTGCGAGTGTTCACAGAA |
| Citrobacter koseri ATCC BAA-895 | CKO_03615 | -178 | 4.1 | TTTTTAGATCTGAAACACAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04608 | -178 | 4.1 | TTTTATGAGCGATAGCACAGAA |
| -126 | 3.7 | AAATGTGAATCTTGCCAGAAAA | ||
| -57 | 3.9 | TGATGCGATATAAATAAAACAA | ||
| Enterobacter sp. 638 | Ent638_0393 | -167 | 3.9 | TTTTTCGATCCAAGCCACAAAA |
| Erwinia amylovora ATCC 49946 | EAM_0455 | -158 | 4.2 | AAATGTGACACAGCACGAATAA |
| Serratia proteamaculans 568 | Spro_0454 | -180 | 3.7 | AACTGTGAAGTGTGGCAGAAAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3601 | -258 | 3.7 | TAAAGTGATTATCGTCTCTAAA |
|
Position: -126
Score: 4 Sequence: AGGTGTTAAATTGATCACGTTT
Locus tag: PAU_04124
|
||||
| PAU_04124 | -126 | 4 | AGGTGTTAAATTGATCACGTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cyaA | ||||
| Ortholog function: Adenylate cyclase (EC 4.6.1.1) | ||||
| Proteus mirabilis HI4320 | PMI3333 | -130 | 4 | AGGTGTTAAATTGATCACGTTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4643 | -126 | 4 | AGGTGTTAAATTGATCACGTTT |
|
Position: -200
Score: 3.8 Sequence: ATAAGTAATACTTATAAAATAT
Locus tag: PAU_04239
|
||||
| PAU_04239 | -200 | 3.8 | ATAAGTAATACTTATAAAATAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fsaB | ||||
| Ortholog function: fructose 6-phosphate aldolase 2 | ||||
| Enterobacter sp. 638 | Ent638_4030 | -214 | 3.7 | ACGCATGATCCCCATCACATTC |
|
Position: -213
Score: 4.1 Sequence: ATTTGCGAGCCACATCGAATAA
Position: -195
Score: 4.3 Sequence: ATAAATGATTCATATCACCTTT
Locus tag: PAU_04248
|
||||
| PAU_04248 | -213 | 4.1 | ATTTGCGAGCCACATCGAATAA | |
| -195 | 4.3 | ATAAATGATTCATATCACCTTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cytR | ||||
| Ortholog function: transcriptional repressor | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3934 | -128 | 3.9 | AAATTCAATATTCATCACACTT |
| Citrobacter koseri ATCC BAA-895 | CKO_03060 | -129 | 3.8 | AAATTAAATATCCATCACACTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04229 | -162 | 3.6 | TCTTGCGAGCCGGATCGAAAAA |
| -143 | 3.9 | AAATTTAACAAGCATCACGTTT | ||
| Yersinia pestis KIM | y0297 | -177 | 3.7 | TTCTGCGAGCCAGTTCGAAAAA |
| -135 | 3.6 | TTATGCAAATTAGGTAACAAAT | ||
| Edwardsiella tarda EIB202 | ETAE_3434 | -258 | 4.2 | AAGTGCGATCGGGATCGAAAAA |
| -175 | 3.6 | ATATGTGATCATATACTCATCG | ||
| Proteus mirabilis HI4320 | PMI3218 | -207 | 4.3 | TTTTGCGAACTACCTCATAAAA |
| -189 | 3.9 | AAAAACGATTGGTATCACACTT | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4760 | -213 | 4.2 | ATTTGCGAGCCATATCGAATAA |
| -195 | 4.6 | ATAAATGATTTATATCACACTT | ||