Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of AlsR regulog to Escherichia coli SECEC SMS-3-5

Reference regulog properties
Source regulog: AlsR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: RpiR
Regulation mode: repressor
Biological process: Allose utilization
Effector: D-allose
Phylum: Gammaproteobacteria
Propagated regulon:
Target genome Escherichia coli SECEC SMS-3-5
Orthologous TF(s) EcSMS35_4555
Regulated genes 2
Built upon 5 sites [see more]
Predicted regulatory interactions in Escherichia coli SECEC SMS-3-5
Locus tag Position Score Sequence
Position: -264
Score: 4.8
Sequence: TATCTGTTTTACAGAGT
Locus tag: EcSMS35_4555
EcSMS35_4555 -264 4.8 TATCTGTTTTACAGAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: alsR
Ortholog function: Transcriptional regulator of D-allose utilization, RpiR family
Citrobacter koseri ATCC BAA-895 CKO_03784 -56 4.4 GGCCTGTTCTACACACC
-1 4.1 AATGAGTCAGTCAGAAT
Escherichia coli str. K-12 substr. MG1655 b4089 -264 5.3 GATCTGTTTTACAGAGT
Position: -111
Score: 4.8
Sequence: ACTCTGTAAAACAGATA
Locus tag: EcSMS35_4556
EcSMS35_4556 -111 4.8 ACTCTGTAAAACAGATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rpiB
Ortholog function: D-allose-6-phosphate isomerase (EC 5.3.1.-) / Ribose 5-phosphate isomerase B (EC 5.3.1.6)
Citrobacter koseri ATCC BAA-895 CKO_03782 -106 4.4 GGTGTGTAGAACAGGCC
Escherichia coli str. K-12 substr. MG1655 b4090 -111 5.3 ACTCTGTAAAACAGATC
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