Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of NarP regulog to Escherichia coli SECEC SMS-3-5

Reference regulog properties
Source regulog: NarP - Enterobacteriales
Regulator type: Transcription factor
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrate; Nitrite
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Escherichia coli SECEC SMS-3-5
Orthologous TF(s) EcSMS35_2341
Regulated genes 22
Built upon 125 sites [see more]
Predicted regulatory interactions in Escherichia coli SECEC SMS-3-5
Locus tag Position Score Sequence
Position: -218
Score: 4.1
Sequence: TACCGCGTACTGGGTA
Locus tag: EcSMS35_0125
EcSMS35_0125 -218 4.1 TACCGCGTACTGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: aceF
Ortholog function: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
Salmonella typhimurium LT2 STM0153 -204 4.3 TACCTCCTGGTGGGTA
Citrobacter koseri ATCC BAA-895 CKO_03258 -204 4.2 TACTCCCAGGGGAGTA
Serratia proteamaculans 568 Spro_4010 -198 4.2 TACCTCGTAAATGGTA
Position: -90
Score: 3.9
Sequence: TACCTCACAAAGGTTA
Locus tag: EcSMS35_0786
EcSMS35_0786 -90 3.9 TACCTCACAAAGGTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: modA
Ortholog function: Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
Escherichia coli str. K-12 substr. MG1655 b0763 -90 3.9 TACCTCACAAAGGTTA
Salmonella typhimurium LT2 STM0781 -91 4.2 TAATCGTTAATGGGTA
Citrobacter koseri ATCC BAA-895 CKO_02372 -90 4 TAACCTCAATTGGGTA
Position: -143
Score: 4.5
Sequence: TACCTCTCTGGCGGTA
Locus tag: EcSMS35_0902
EcSMS35_0902 -143 4.5 TACCTCTCTGGCGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hcp
Ortholog function: Hydroxylamine reductase (EC 1.7.-.-)
Escherichia coli str. K-12 substr. MG1655 b0873 -143 4.5 TACCTCTCTGGCGGTA
Position: -97
Score: 3.7
Sequence: TAACCAATAAATGGTA
Locus tag: EcSMS35_1392
EcSMS35_1392 -97 3.7 TAACCAATAAATGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yeaR
Ortholog function: Conserved hypothetical protein
Escherichia coli str. K-12 substr. MG1655 b1797 -97 3.7 TAACCAATAAATGGTA
Position: -227
Score: 3.5
Sequence: TAACACTAATGGAGAA
Locus tag: EcSMS35_1611
EcSMS35_1611 -227 3.5 TAACACTAATGGAGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dmsB
Ortholog function: Dimethyl sulfoxide reductase, chain B (EC 1.8.99.-)
Escherichia coli str. K-12 substr. MG1655 b0895 -180 3.4 TACCGAACAATAATTA
Escherichia coli str. K-12 substr. MG1655 b1589 -92 4.7 TAACCCAAAATGGGTA
Salmonella typhimurium LT2 STM0965 -161 4.6 TACCCTATTAGGGGTA
Salmonella typhimurium LT2 STM1497 -95 5 TACTCCCAAAGGGGTA
Citrobacter koseri ATCC BAA-895 CKO_01583 -93 4.8 TACCTATAAGGGGTTA
-20 3.8 TAACTATAATGGAGTG
Position: -92
Score: 4.7
Sequence: TAACCCAAAATGGGTA
Locus tag: EcSMS35_1613
EcSMS35_1613 -92 4.7 TAACCCAAAATGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ynfE
Ortholog function: Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-)
Escherichia coli str. K-12 substr. MG1655 b1587 -92 4.7 TAACCCAAAATGGGTA
Salmonella typhimurium LT2 STM1499 -95 5 TACTCCCAAAGGGGTA
Citrobacter koseri ATCC BAA-895 CKO_01581 -93 4.8 TACCTATAAGGGGTTA
-20 3.8 TAACTATAATGGAGTG
Serratia proteamaculans 568 Spro_1687 -143 4.3 TACCCACTTCTGAGTA
Position: -141
Score: 4.3
Sequence: TACCGCTATTGAGGTA
Locus tag: EcSMS35_1700
EcSMS35_1700 -141 4.3 TACCGCTATTGAGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fdnG
Ortholog function: Formate dehydrogenase N, alpha subunit (EC 1.2.1.2)
Escherichia coli str. K-12 substr. MG1655 b1474 -141 4.3 TACCGCTATTGAGGTA
Salmonella typhimurium LT2 STM1570 -188 4.1 TACCTCCCTGGAGTTA
Position: -55
Score: 4.7
Sequence: TACTCCAATGTGGGTA
Locus tag: EcSMS35_1876
EcSMS35_1876 -55 4.7 TACTCCAATGTGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompW
Ortholog function: Outer membrane protein W precursor
Escherichia coli str. K-12 substr. MG1655 b1256 -55 4.5 TACTCCAATGTAGGTA
Salmonella typhimurium LT2 STM1732 -55 4.7 TACTTCATTGTGGGTA
Citrobacter koseri ATCC BAA-895 CKO_01333 -55 4.5 TACTCCATTGTAGGTA
Yersinia pestis KIM y2044 -43 4.7 TACTCATTTGTAGGTA
Serratia proteamaculans 568 Spro_2674 -28 4.5 TACCCGTAAGTAGGTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2303 -56 4.9 TACCTACTTAGGGGTA
Edwardsiella tarda EIB202 ETAE_1528 -52 3.7 TCACTCAATATGGTTA
Proteus mirabilis HI4320 PMI1350 -59 4.9 TACTTATTAATGGGTA
Photorhabdus luminescens subsp. laumondii TTO1 plu2478 -55 3.8 TTCTAATATATGAGTA
Position: -215
Score: 4.7
Sequence: TACCCAGAAGTGAGTA
Locus tag: EcSMS35_1901
EcSMS35_1901 -215 4.7 TACCCAGAAGTGAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhE
Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
Escherichia coli str. K-12 substr. MG1655 b1241 -215 4.7 TACCCAGAAGTGAGTA
Salmonella typhimurium LT2 STM1749 -216 4.6 TACTCAGAAGTGAGTA
Citrobacter koseri ATCC BAA-895 CKO_01318 -216 4.6 TACTCAGAAGTGAGTA
Yersinia pestis KIM y2023 -260 4 TACCTAAGAATAGTTA
Serratia proteamaculans 568 Spro_2704 -252 4 TACCCAAGAGTAGTTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2326 -289 4 CACCCACAAATAGGTA
Edwardsiella tarda EIB202 ETAE_1508 -239 4.4 TACCCAAGAATGAGTA
Position: -158
Score: 4.3
Sequence: TTATCCTAAAGGGGTA
Locus tag: EcSMS35_1915
EcSMS35_1915 -158 4.3 TTATCCTAAAGGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: narG
Ortholog function: Respiratory nitrate reductase, alpha chain (EC 1.7.99.4)
Escherichia coli str. K-12 substr. MG1655 b1224 -158 4.3 TTATCCTAAAGGGGTA
Salmonella typhimurium LT2 STM1764 -159 4.3 TCCTCCCAAAGGAGTA
Citrobacter koseri ATCC BAA-895 CKO_01301 -158 4.6 TCCTCCTTAAGGGGTA
Position: -180
Score: 3.4
Sequence: TACCGAACAATAATTA
Locus tag: EcSMS35_2226
EcSMS35_2226 -180 3.4 TACCGAACAATAATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dmsA
Ortholog function: Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-)
Escherichia coli str. K-12 substr. MG1655 b0894 -180 3.4 TACCGAACAATAATTA
Salmonella typhimurium LT2 STM0964 -161 4.6 TACCCTATTAGGGGTA
Citrobacter koseri ATCC BAA-895 CKO_02177 -166 5.2 TACCCCTTTGGGGGTA
Position: -91
Score: 4
Sequence: TACATAAAATGGGGTA
Locus tag: EcSMS35_2341
EcSMS35_2341 -91 4 TACATAAAATGGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: narP
Ortholog function: Nitrate/nitrite response regulator protein NarP, LuxR family
Escherichia coli str. K-12 substr. MG1655 b2193 -91 4 TACATAAAATGGGGTA
Serratia proteamaculans 568 Spro_3490 -243 4.8 TCCCCCTAAAGGGGTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1901 -257 4.3 TCACCCTTTAGAGGTA
Edwardsiella tarda EIB202 ETAE_1111 -169 4.1 TTCCTCTTTTGGGTTA
Position: -22
Score: 4.2
Sequence: TACTTTTCAAGGAGTA
Locus tag: EcSMS35_2610
EcSMS35_2610 -22 4.2 TACTTTTCAAGGAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: talA
Ortholog function: Transaldolase (EC 2.2.1.2)
Escherichia coli str. K-12 substr. MG1655 b2464 -22 4.2 TACTTTTCAAGGAGTA
Salmonella typhimurium LT2 STM2473 -22 4.2 TACTTTTCAAGGAGTA
Citrobacter koseri ATCC BAA-895 CKO_00330 -22 4.2 TACTTTTCAAGGAGTA
Position: -118
Score: 4.5
Sequence: TACTCATTAATGAGCA
Locus tag: EcSMS35_2833
EcSMS35_2833 -118 4.5 TACTCATTAATGAGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: norV
Ortholog function: Nitric oxide reductase, flavorubredoxin (EC 1.18.1.-)
Escherichia coli str. K-12 substr. MG1655 b2710 -118 4.6 TACTCATTAATGGGCA
Citrobacter koseri ATCC BAA-895 CKO_04064 -118 4.2 TACCATTTTATGAGTA
Position: -101
Score: 5.2
Sequence: TACCCCTTAAGGAGTA
Locus tag: EcSMS35_3647
EcSMS35_3647 -101 5.2 TACCCCTTAAGGAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nirB
Ortholog function: Nitrite reductase large subunit (EC 1.7.1.4)
Escherichia coli str. K-12 substr. MG1655 b3365 -101 5.1 TACCCATTAAGGAGTA
Salmonella typhimurium LT2 STM3474 -101 5 TACCCATTAAGAGGTA
Citrobacter koseri ATCC BAA-895 CKO_04789 -101 5.2 TACCTCTTAAGGAGTA
Yersinia pestis KIM y3945 -100 4.5 TACCACCTTAGAGGTA
Serratia proteamaculans 568 Spro_4595 -197 4.5 TACTCCCGAATGGGTA
-101 4.5 TACCACATTAGAGGTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4079 -100 4.8 TACCCACAAAGAAGTA
Proteus mirabilis HI4320 PMI1479 -134 4.1 TACTACTTTGGTAGTA
Position: -193
Score: 4.6
Sequence: TACCTCGAAGGGAGCA
Locus tag: EcSMS35_4107
EcSMS35_4107 -193 4.6 TACCTCGAAGGGAGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: atpI
Ortholog function: ATP synthase maturation
Escherichia coli str. K-12 substr. MG1655 b3739 -31 4.6 TACCTCGAAGGGAGCA
Salmonella typhimurium LT2 STM3872 -30 4.5 TACCTCGAAGTGAGCA
Citrobacter koseri ATCC BAA-895 CKO_00079 -30 4.6 TACCTCGAAGGGAGCA
Serratia proteamaculans 568 Spro_0001 -33 4.6 TACCTCCTCAGGGGTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4519 -33 4.3 TACCTCTGAAAAGGTA
Edwardsiella tarda EIB202 ETAE_3526 -156 4.4 TACCTCCTGGGGGGTA
Position: -175
Score: 4.5
Sequence: TAACTCTAAAGTGGTA
Locus tag: EcSMS35_4532
EcSMS35_4532 -175 4.5 TAACTCTAAAGTGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrfA
Ortholog function: Nitrite reductase, cytochrome c(552)
Escherichia coli str. K-12 substr. MG1655 b4070 -175 4.5 TAACTCTAAAGTGGTA
Salmonella typhimurium LT2 STM4277 -177 4.5 TAACTCTAAAGTGGTA
Citrobacter koseri ATCC BAA-895 CKO_03814 -180 4.5 TAACTCTAAAGTGGTA
Position: -101
Score: 4.7
Sequence: TACCTATAAAGGAGCA
Locus tag: EcSMS35_4625
EcSMS35_4625 -101 4.7 TACCTATAAAGGAGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: frdA
Ortholog function: Fumarate reductase subunit A (EC 1.3.5.4)
Escherichia coli str. K-12 substr. MG1655 b4154 -101 4.7 TACCTATAAAGGAGCA
Salmonella typhimurium LT2 STM4343 -100 4.7 TACCCATAAAGGAGCA
Citrobacter koseri ATCC BAA-895 CKO_03678 -60 4.7 TACCTATAAAGGAGCA
Position: -79
Score: 3.7
Sequence: TGCTACGTAAGGGTTA
Locus tag: EcSMS35_4688
EcSMS35_4688 -79 3.7 TGCTACGTAAGGGTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dnrN
Ortholog function: Nitric oxide-dependent regulator DnrN
Escherichia coli str. K-12 substr. MG1655 b4209 -79 3.7 TGCTACGTAAGGGTTA
Salmonella typhimurium LT2 STM4399 -78 3.9 CACCCCGAAAGAGTTA
Citrobacter koseri ATCC BAA-895 CKO_03623 -78 3.9 TGACCCGAAAGGGTTA
Yersinia pestis KIM y0652 -108 4.4 TACCCACTTGGAGTTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3606 -81 4.8 TACCTCGTAAGCGGTA
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