Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of GntR regulog to Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7

Reference regulog properties
Source regulog: GntR - Enterobacteriales  
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor
Biological process: Gluconate utilization
Effector: Gluconate
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7
Orthologous TF(s) SPAB_04399
Regulated genes 4
Built upon 61 sites [see more]
Predicted regulatory interactions in Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7
Locus tag Position Score Sequence
Position: -178
Score: 5.8
Sequence: ACATGTTACCCGTATCATTC
Locus tag: SPAB_04371
SPAB_04371 -178 5.8 ACATGTTACCCGTATCATTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: gntT
Ortholog function: High-affinity H+/gluconate symporter
Escherichia coli str. K-12 substr. MG1655 b3415 -178 5.9 AGATGTTACCCGTATCATTC
-37 4.9 TGACGTTACCCATAACAAAT
Salmonella typhimurium LT2 STM3512 -178 6 ATATGTTACCCGTATCATTC
-37 4.7 TGACGTTACCCATAACAAAG
Citrobacter koseri ATCC BAA-895 CKO_04836 -178 6 ATATGTTACCCGTATCATTC
-37 4.9 CGACGTTACCCATAACAAAT
Position: -61
Score: 6.4
Sequence: CAATGTTACCGATAACAGTT
Locus tag: SPAB_04398
SPAB_04398 -61 6.4 CAATGTTACCGATAACAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gntK
Ortholog function: Thermoresistant gluconokinase (EC 2.7.1.12)
Salmonella typhimurium LT2 STM3542 -61 6.4 CAATGTTACCGATAACAGTT
-48 5.1 AACAGTTACCCGTAACAAAT
Position: -117
Score: 4.3
Sequence: TCACGTTATGCGTAACATTG
Locus tag: SPAB_05642
SPAB_05642 -117 4.3 TCACGTTATGCGTAACATTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: idnD
Ortholog function: L-idonate 5-dehydrogenase (EC 1.1.1.264)
Escherichia coli str. K-12 substr. MG1655 b4267 -146 3.8 TAtTtcTACtGaTAAgAaTT
-116 3.8 TcAcGTTAtgcGTAACATag
Salmonella typhimurium LT2 STM4484 -116 4.3 TcAcGTTAtgcGTAACATTg
Serratia proteamaculans 568 Spro_3287 -120 4.2 TcAcGTTAaaGGTAACAgcT
Position: -119
Score: 5.1
Sequence: CAATGTTACGCATAACGTGA
Locus tag: SPAB_05643
SPAB_05643 -119 5.1 CAATGTTACGCATAACGTGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: idnK
Ortholog function: Thermoresistant gluconokinase (EC 2.7.1.12)
Escherichia coli str. K-12 substr. MG1655 b4268 -119 5 CTATGTTACGCATAACGTGA
Salmonella typhimurium LT2 STM4485 -119 5.1 CAATGTTACGCATAACGTGA
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