Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of FadR regulog to Yersinia pestis biovar Medievalis str. 91001

Reference regulog properties
Source regulog: FadR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: activator (repressor)
Biological process: Fatty acid degradation
Effector: Palmitoyl-CoA; Oleoyl-CoA
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Yersinia pestis biovar Medievalis str. 91001
Orthologous TF(s) YP1946
Regulated genes 10
Built upon 130 sites [see more]
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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

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Predicted regulatory interactions in Yersinia pestis biovar Medievalis str. 91001
Locus tag Position Score Sequence
Position: -36
Score: 4.7
Sequence: AACAGGTCAGACCTCCT
Locus tag: YP0688
YP0688 -36 4.7 AACAGGTCAGACCTCCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadE
Ortholog function: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Escherichia coli str. K-12 substr. MG1655 b0221 -38 4.5 AAGTGGTCAGACCTCCT
Salmonella typhimurium LT2 STM0309 -39 4.5 AAGTGGTCAGACCTCCT
Citrobacter koseri ATCC BAA-895 CKO_02965 -39 4.5 AAGTGGTCAGACCTCCT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00235 -40 4.5 AAGTGGTCAGACCTCCT
Enterobacter sp. 638 Ent638_0758 -39 4.5 AAGTGGTCAGACCTCCT
Erwinia amylovora ATCC 49946 EAM_0890 -38 5.1 AACAGGTCCGACCACTT
Yersinia pestis KIM y0946 -36 4.7 AACAGGTCAGACCTCCT
Serratia proteamaculans 568 Spro_0949 -35 5.1 AACAGGTCAGACCTCTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3474 -129 5.1 AACAGGTCAGACCTCTT
Proteus mirabilis HI4320 PMI0348 -44 4.6 AACAGGTCTGACCTCTG
Photorhabdus luminescens subsp. laumondii TTO1 plu1192 -57 4.6 AACAGGTCCGACCTCTG
Position: -49
Score: 3.8
Sequence: TTGAGGTCCTACCAGTT
Locus tag: YP0780
YP0780 -49 3.8 TTGAGGTCCTACCAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadM
Ortholog function: Long-chain acyl-CoA thioesterase FadM (EC=3.1.2.-)
Escherichia coli str. K-12 substr. MG1655 b0443 -59 4.5 AAGAGGTCATACCAGTT
Salmonella typhimurium LT2 STM0454 -70 3.9 TAGAGGTCATACCAGTT
Citrobacter koseri ATCC BAA-895 CKO_02717 -59 4.4 ATGAGGTCATACCAGTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00405 -54 4.3 AAGTGGTGTGACCTCTT
Enterobacter sp. 638 Ent638_0910 -58 4.1 AAGAGGTCATACCAGTC
Yersinia pestis KIM y1033 -49 3.8 TTGAGGTCCTACCAGTT
Serratia proteamaculans 568 Spro_1101 -97 4.3 TACAGGTCTTACCAGTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1154 -44 4.4 ATCAGGTCGTACCAGTT
Position: -42
Score: 4.6
Sequence: ATCTGGTCATACCTCCT
Locus tag: YP1719
YP1719 -42 4.6 ATCTGGTCATACCTCCT
Supported by regulated orthologs from reference regulons