Propagation of Fur regulog to Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853
Source regulog: | Fur - Enterobacteriales |
Regulator type: | Transcription factor |
Regulator family: | FUR |
Regulation mode: | repressor (activator) |
Biological process: | Iron homeostasis |
Effector: | Iron ion, (Fe2+) |
Phylum: | Proteobacteria/gamma |
Propagated regulon: | |
Target genome | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
Orthologous TF(s) | SeD_A0800 |
Regulated genes | 31 |
Locus tag | Position | Score | Sequence | |
---|---|---|---|---|
Position: -44
Score: 4.8 Sequence: GGTAATAATTCTTATTTAC
Locus tag: SeD_A0395
|
||||
SeD_A0395 | -44 | 4.8 | GGTAATAATTCTTATTTAC | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: foxA | ||||
Ortholog function: TonB-dependent siderophore receptor | ||||
Salmonella typhimurium LT2 | STM0364 | -26 | 4.5 | GGTAATAATTCTTATTTAC |
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02304 | -98 | 4.2 | AATAATAATTCGCATTACT |
Enterobacter sp. 638 | Ent638_0493 | -45 | 4.7 | GGTAATAATTCTTATTAAC |
Erwinia amylovora ATCC 49946 | EAM_0358 | -123 | 4.4 | AAAAAAGATAATAATTCTC |
-117 | 5 | GATAATAATTCTCATTTAC | ||
Serratia proteamaculans 568 | Spro_2736 | -140 | 4.9 | GATAAAGATAATAATTATC |
-134 | 5.2 | GATAATAATTATCATTAAT | ||
Position: -132
Score: 4.4 Sequence: ATTATTGATAACTATTTGC
Position: -126
Score: 4.2 Sequence: GATAACTATTTGCATTTGC
Locus tag: SeD_A0681
|
||||
SeD_A0681 | -132 | 4.4 | ATTATTGATAACTATTTGC | |
-126 | 4.2 | GATAACTATTTGCATTTGC | ||
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: fepA | ||||
Ortholog function: TonB-dependent siderophore receptor FepA | ||||
Escherichia coli str. K-12 substr. MG1655 | b0584 | -184 | 4.1 | ATTATTGATAACTATTTGC |
-178 | 4 | GATAACTATTTGCATTTGC | ||
Salmonella typhimurium LT2 | STM0585 | -132 | 4.1 | ATTATTGATAACTATTTGC |
-126 | 4 | GATAACTATTTGCATTTGC | ||
Citrobacter koseri ATCC BAA-895 | CKO_02579 | -246 | 4.4 | GATAACTATTTTCATTTGC |
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00602 | -197 | 4.1 | ATTATTGATAACTATTTGC |
-191 | 4 | GATAACTATTTGCATTTGC | ||
Enterobacter sp. 638 | Ent638_1116 | -196 | 4.4 | ATTATTGATAACTATTTTC |
-190 | 4.4 | GATAACTATTTTCATTTGC | ||
Position: -37
Score: 5 Sequence: GATAACGATAATTACTATC
Position: -31
Score: 5.2 Sequence: GATAATTACTATCATTATC
Locus tag: SeD_A0688
|
||||
SeD_A0688 | -37 | 5 | GATAACGATAATTACTATC | |
-31 | 5.2 | GATAATTACTATCATTATC | ||
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: fepD | ||||
Ortholog function: iron-enterobactin (enterochelin) ABC transporter membrane protein | ||||
Escherichia coli str. K-12 substr. MG1655 | b0590 | -37 | 4.8 | GATAACGATAATTAATTTC |
-31 | 4.9 | GATAATTAATTTCATTATC | ||
Salmonella typhimurium LT2 | STM0592 | -37 | 4.8 | GATAACGATAATTACTATC |
-31 | 5 | GATAATTACTATCATTATC | ||
Citrobacter koseri ATCC BAA-895 | CKO_02571 | -37 | 4.8 | GATAACGATAATTACTATC |
-31 | 5 | GATAATTACTATCATTATC | ||
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00608 | -43 | 4.8 | GATAACGATAATTACTATC |
-37 | 5 | GATAATTACTATCATTATC | ||
Enterobacter sp. 638 | Ent638_1122 | -30 | 4.8 | GATAACGATAATTACTATC |
-24 | 5 | GATAATTACTATCATTATC | ||
Serratia proteamaculans 568 | Spro_3424 | -48 | 4.4 | AATAATGATAATAAAACTC |
-42 | 4.4 | GATAATAAAACTCATTTAT | ||
Position: -98
Score: 5 Sequence: GATAATGATAGTAATTATC
Position: -92
Score: 4.9 Sequence: GATAGTAATTATCGTTATC
Locus tag: SeD_A0689
|
||||
SeD_A0689 | -98 | 5 | GATAATGATAGTAATTATC | |
-92 | 4.9 | GATAGTAATTATCGTTATC | ||
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: ybdA | ||||
Ortholog function: enterobactin exporter EntS, MFS family | ||||
Escherichia coli str. K-12 substr. MG1655 | b0591 | -98 | 4.8 | GATAATGAAATTAATTATC |
-92 | 4.9 | GAAATTAATTATCGTTATC | ||
Salmonella typhimurium LT2 | STM0593 | -98 | 4.9 | GATAATGATAGTAATTATC |
-92 | 4.8 | GATAGTAATTATCGTTATC | ||
Citrobacter koseri ATCC BAA-895 | CKO_02570 | -99 | 4.9 | GATAATGATAGTAATTATC |
-93 | 4.8 | GATAGTAATTATCGTTATC | ||
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00609 | -94 | 4.9 | GATAATGATAGTAATTATC |
-88 | 4.8 | GATAGTAATTATCGTTATC | ||
Enterobacter sp. 638 | Ent638_1123 | -94 | 4.9 | GATAATGATAGTAATTATC |
-88 | 4.8 | GATAGTAATTATCGTTATC | ||
Serratia proteamaculans 568 | Spro_3423 | -112 | 4.4 | ATAAATGAGTTTTATTATC |
-106 | 4.4 | GAGTTTTATTATCATTATT | ||
Position: -160
Score: 4.5 Sequence: TATAATAATGATTATTATT
Position: -157
Score: 4.9 Sequence: AATAATGATTATTATTTCT
Position: -42
Score: 4.7 Sequence: GAAAATGAGAAGCATTAAC
Locus tag: SeD_A0690
|
||||
SeD_A0690 | -160 | 4.5 | TATAATAATGATTATTATT | |
-157 | 4.9 | AATAATGATTATTATTTCT | ||
-42 | 4.7 | GAAAATGAGAAGCATTAAC | ||
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: fepB | ||||
Ortholog function: ferric enterobactin (enterochelin) binding protein; periplasmic component | ||||
Salmonella typhimurium LT2 | STM0594 | -160 | 4.2 | TATAATAATGATTATTATT |
-157 | 4.6 | AATAATGATTATTATTTCT | ||
Position: -170
Score: 5.1 Sequence: AGAAATAATAATCATTATT
Locus tag: SeD_A0691
|
||||
SeD_A0691 | -170 | 5.1 | AGAAATAATAATCATTATT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: entC | ||||
Ortholog function: isochorismate synthetase, siderophore biosynthesis | ||||
Escherichia coli str. K-12 substr. MG1655 | b0593 | -163 | 4.6 | AATAATGCTTCTCATTTTC |
-48 | 5 | ATAAATGATAATCATTATT | ||
Salmonella typhimurium LT2 | STM0595 | -170 | 4.9 | AGAAATAATAATCATTATT |
-164 | 4.4 | AATAATCATTATTATACAC | ||
Position: -82
Score: 5 Sequence: TATAATGATACGCATTATC
Locus tag: SeD_A0800
|
||||
SeD_A0800 | -82 | 5 | TATAATGATACGCATTATC | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: fur | ||||
Ortholog function: ferric uptake transcription regulator | ||||
Escherichia coli str. K-12 substr. MG1655 | b0683 | -83 | 4.9 | TATAATGATACGCATTATC |
Salmonella typhimurium LT2 | STM0693 | -82 | 4.9 | TATAATGATACGCATTATC |
Enterobacter sp. 638 | Ent638_1198 | -83 | 4.5 | TATAATGAAACGCATTATC |
Edwardsiella tarda EIB202 | ETAE_2610 | -193 | 4.4 | TATAATGAATCTCACTATT |
Proteus mirabilis HI4320 | PMI0543 | -179 | 4.2 | AATATTGAGAATGATAATT |
-173 | 4.5 | GAGAATGATAATTATTCAA | ||
Photorhabdus luminescens subsp. laumondii TTO1 | plu1327 | -106 | 4.2 | GGTTTTCATTTTCATTAGC |
Position: -47
Score: 5.2 Sequence: TATAATGAGAATTATTATC
Position: -41
Score: 4.7 Sequence: GAGAATTATTATCATTACA
Locus tag: SeD_A0867
|
||||
SeD_A0867 | -47 | 5.2 | TATAATGAGAATTATTATC | |
-41 | 4.7 | GAGAATTATTATCATTACA | ||
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: gpmA | ||||
Ortholog function: phosphoglyceromutase 1 | ||||
Escherichia coli str. K-12 substr. MG1655 | b0755 | -47 | 5 | TATAATGAGAATTATTATC |
-41 | 4.7 | GAGAATTATTATCATTAAA | ||
Salmonella typhimurium LT2 | STM0772 | -47 | 5 | TATAATGAGAATTATTATC |
-41 | 4.5 | GAGAATTATTATCATTACA | ||
Citrobacter koseri ATCC BAA-895 | CKO_02381 | -46 | 5 | TATAATGAGAATTATTATC |
-40 | 4.5 | GAGAATTATTATCATTCAA | ||
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00768 | -96 | 4.6 | TATAATGAGAATAGTTATC |
Enterobacter sp. 638 | Ent638_1246 | -164 | 4.7 | TATAATGAGAATTGTTATC |
-158 | 4.1 | GAGAATTGTTATCATTCAA | ||
Yersinia pestis KIM | y3048 | -103 | 5.3 | TATAATGATAATAATTATC |
-97 | 4.6 | GATAATAATTATCATTGAA | ||
Serratia proteamaculans 568 | Spro_1288 | -51 | 4.9 | TATAATGATTTTCGTTATC |
Edwardsiella tarda EIB202 | ETAE_2569 | -49 | 4.6 | CATGATGATAATAATTATC |
-43 | 5.3 | GATAATAATTATCATTATA | ||
Position: -136
Score: 4.5 Sequence: TTTAATCATAATAAATATT
Locus tag: SeD_A0926
|
||||
SeD_A0926 | -136 | 4.5 | TTTAATCATAATAAATATT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: dps | ||||
Ortholog function: DNA protection ferritin-like protein | ||||
Salmonella typhimurium LT2 | STM0831 | -188 | 4.4 | TAAAATGAGAATTATTACC |
-136 | 4 | TTTAATCAAAATAAATATT | ||
Citrobacter koseri ATCC BAA-895 | CKO_02310 | -188 | 4.5 | GTGAATGAGAATTATTAAC |
-137 | 4.3 | TTTAATCATTTTCAATATT | ||
Enterobacter sp. 638 | Ent638_1299 | -118 | 4.1 | TAACATTATTATCACTATT |
Position: -44
Score: 4.2 Sequence: ATTCATAGTAATGATTATC
Position: -38
Score: 5.3 Sequence: AGTAATGATTATCAATATC
Locus tag: SeD_A1293
|
||||
SeD_A1293 | -44 | 4.2 | ATTCATAGTAATGATTATC | |
-38 | 5.3 | AGTAATGATTATCAATATC | ||
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: sdiA | ||||
Ortholog function: transcriptional regulator of ftsQAZ gene cluster (LuxR/UhpA family) | ||||
Escherichia coli str. K-12 substr. MG1655 | b1916 | -38 | 4.4 | ATAAATGATACTCACTCTC |
Salmonella typhimurium LT2 | STM1950 | -44 | 4.4 | ATTCATAATAATGATTATC |
-38 | 5.3 | AATAATGATTATCAATATC | ||
Citrobacter koseri ATCC BAA-895 | CKO_01029 | -44 | 4.4 | AAACATTATAATGATTATC |
-38 | 5 | TATAATGATTATCAATCTC | ||
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02414 | -78 | 4.6 | ATTTATAATAATGATTATC |
-72 | 4.4 | AATAATGATTATCAATCAG | ||
Enterobacter sp. 638 | Ent638_2503 | -39 | 4.2 | AATAATGATTAGTTTTTTC |
Position: -236
Score: 4.1 Sequence: ATTGTTGATAACTATTTTC
Position: -230
Score: 4.2 Sequence: GATAACTATTTTCATTTAG
Locus tag: SeD_A1581
|
||||
SeD_A1581 | -236 | 4.1 | ATTGTTGATAACTATTTTC | |
-230 | 4.2 | GATAACTATTTTCATTTAG | ||
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: oppA | ||||
Ortholog function: oligopeptide ABC transporter; periplasmic binding protein | ||||
Escherichia coli str. K-12 substr. MG1655 | b1243 | -245 | 4.7 | GGTAATGAGAATAATTAAC |
Citrobacter koseri ATCC BAA-895 | CKO_01320 | -247 | 4.3 | GGTGATGAGAATTATTTTC |
-241 | 4 | GAGAATTATTTTCAATAAG | ||
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02197 | -216 | 4.4 | GCAAATGAGAATTATTTTT |
Enterobacter sp. 638 | Ent638_2302 | -247 | 4 | GTAGATGAGAATGATTTTC |
Position: -134
Score: 5.4 Sequence: GAGAATAATAATCATTATT
Position: -131
Score: 4.2 Sequence: AATAATAATCATTATTTAT
Locus tag: SeD_A1754
|
||||
SeD_A1754 | -134 | 5.4 | GAGAATAATAATCATTATT | |
-131 | 4.2 | AATAATAATCATTATTTAT | ||
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: yncD | ||||
Ortholog function: TonB-dependent siderophore outer membrane receptor | ||||
Salmonella typhimurium LT2 | STM1587 | -179 | 5.1 | GAGAATAATAATCATTATT |
Serratia proteamaculans 568 | Spro_2926 | -150 | 4.1 | GTTAATTAAAATCAATAGT |
-96 | 4.2 | GCTAACTATTTTCATTTTT | ||
Position: -103
Score: 5.5 Sequence: AATAATGATTATTATTCTC
Locus tag: SeD_A1755
|
||||
SeD_A1755 | -103 | 5.5 | AATAATGATTATTATTCTC | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: yncE | ||||
Ortholog function: putative receptor, ATP binding | ||||
Escherichia coli str. K-12 substr. MG1655 | b1452 | -103 | 4.6 | AATAATGATTACCATTCCC |
Salmonella typhimurium LT2 | STM1586 | -103 | 5.2 | AATAATGATTATTATTCTC |
Citrobacter koseri ATCC BAA-895 | CKO_01494 | -202 | 4.5 | AATAATGATTACTATTCGC |
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01908 | -103 | 4.5 | AATAATGATTACTATTCGC |
Enterobacter sp. 638 | Ent638_2098 | -100 | 4.8 | AATAATGATTACTATTCTC |
Serratia proteamaculans 568 | Spro_0586 | -143 | 4.8 | AATAATGATTACTATTCTC |
Position: -66
Score: 4.8 Sequence: TGAAGTGATAATCATTATC
Position: -60
Score: 5.2 Sequence: GATAATCATTATCACTAAC
Locus tag: SeD_A1973
|
||||
SeD_A1973 | -66 | 4.8 | TGAAGTGATAATCATTATC | |
-60 | 5.2 | GATAATCATTATCACTAAC | ||
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: sufA | ||||
Ortholog function: scaffold protein for iron-sulfur cluster assembly | ||||
Escherichia coli str. K-12 substr. MG1655 | b1684 | -65 | 4.4 | TGAACTGATAATCATTATC |
-59 | 5.1 | GATAATCATTATCACTAAC | ||
Salmonella typhimurium LT2 | STM1369 | -66 | 4.7 | TGAAGTGATAATCATTATC |
-60 | 5.1 | GATAATCATTATCACTAAC | ||
Citrobacter koseri ATCC BAA-895 | CKO_01717 | -66 | 4.7 | TGAAGTGATAATCATTATC |
-60 | 5.1 | GATAATCATTATCACTAAC | ||
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02141 | -66 | 4.7 | TGAAGTGATAATCATTATC |
-60 | 5.1 | GATAATCATTATCACTAAC | ||
Enterobacter sp. 638 | Ent638_1760 | -67 | 4.4 | TGAAGTGATAATCGTTATC |
-61 | 4.7 | GATAATCGTTATCACTAAC | ||
Yersinia pestis KIM | y1934 | -129 | 4.5 | TGAAGTGATAATTATTATC |
-123 | 4.8 | GATAATTATTATCACTACC | ||
Serratia proteamaculans 568 | Spro_2179 | -77 | 4.4 | TGAAGTGATAATCGTTATC |
-71 | 4.7 | GATAATCGTTATCACTAAC | ||
Proteus mirabilis HI4320 | PMI1416 | -66 | 4.4 | GATAAGGGTTATCATTACC |
-60 | 4 | GGTTATCATTACCATTAGA | ||
Photorhabdus luminescens subsp. laumondii TTO1 | plu2622 | -87 | 4.4 | GATAAAGGTTATCATTACC |
-81 | 4.3 | GGTTATCATTACCATTATA | ||
Position: -47
Score: 4.6 Sequence: ATTATTGATAATAATAATC
Position: -41
Score: 4.8 Sequence: GATAATAATAATCATTGTG
Locus tag: SeD_A1999
|
||||
SeD_A1999 | -47 | 4.6 | ATTATTGATAATAATAATC | |
-41 | 4.8 | GATAATAATAATCATTGTG | ||
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: hemP | ||||
Ortholog function: hemin uptake protein | ||||
Escherichia coli str. K-12 substr. MG1655 | b1705 | -47 | 4.1 | AATATTGATAATAAGAATC |
-41 | 4.6 | GATAATAAGAATCATTGTT | ||
Salmonella typhimurium LT2 | STM1346 | -47 | 4.5 | ATTATTGATAATAATAATC |
-41 | 4.7 | GATAATAATAATCATTGTG | ||
Citrobacter koseri ATCC BAA-895 | CKO_01729 | -50 | 4.7 | AATATTGATAATAATAATC |
-44 | 4.9 | GATAATAATAATCATTGTT | ||
Citrobacter koseri ATCC BAA-895 | CKO_03737 | 14 | 4.1 | CTTGATGATAATCATTCTT |
20 | 4.8 | GATAATCATTCTTGTTATC | ||
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02163 | -10 | 4.8 | ATTATTGATAATGATTATC |
-4 | 5.1 | GATAATGATTATCATTGTT | ||
Enterobacter sp. 638 | Ent638_1742 | -50 | 4.2 | TTTGTTGATAATGATTATC |
-44 | 5.1 | GATAATGATTATCATTGTT | ||
Serratia proteamaculans 568 | Spro_2170 | -68 | 4 | TCACATGATAATGATTCTC |
-62 | 4.6 | GATAATGATTCTCACTTTG | ||
Edwardsiella tarda EIB202 | ETAE_1796 | -10 | 4.1 | TTATACGATAATGATTATC |
-4 | 5.1 | GATAATGATTATCATTAAG | ||
Proteus mirabilis HI4320 | PMI1424 | -52 | 5.1 | GATAACGATAATGATTATC |
-46 | 5.4 | GATAATGATTATCATAATC | ||
-40 | 4.4 | GATTATCATAATCATAACC | ||
Photorhabdus luminescens subsp. laumondii TTO1 | plu2631 | -54 | 4.7 | TATAACGATAATAATTCTC |
-48 | 4.6 | GATAATAATTCTCACTATG | ||
Position: -131
Score: 4.6 Sequence: GCACTTGATAATCATTATC
Position: -125
Score: 4.9 Sequence: GATAATCATTATCAATAAA
Locus tag: SeD_A2772
|
||||
SeD_A2772 | -131 | 4.6 | GCACTTGATAATCATTATC | |
-125 | 4.9 | GATAATCATTATCAATAAA | ||
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: mntH | ||||
Ortholog function: Mn2+/Fe2+ transporter, NRAMP family | ||||
Escherichia coli str. K-12 substr. MG1655 | b2392 | -68 | 4.7 | GAATTTGATAATCATTCTC |
-62 | 4.2 | GATAATCATTCTCGTTTGG | ||
Salmonella typhimurium LT2 | STM2408 | -68 | 4.5 | GCACTTGATAATCATTATC |
-62 | 4.8 | GATAATCATTATCAATAAA | ||
Citrobacter koseri ATCC BAA-895 | CKO_00404 | -50 | 4.3 | GCACTTGATAATCATTCTC |
-44 | 4.5 | GATAATCATTCTCAATAAA | ||
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02743 | -68 | 4.3 | GAACTTGATAATCATTCGC |
-62 | 4.3 | GATAATCATTCGCATTTTG | ||
Enterobacter sp. 638 | Ent638_2926 | -67 | 4.8 | GATCTTGATAATCATTCTC |
-61 | 4.8 | GATAATCATTCTCATTTTG | ||
Yersinia pestis KIM | y1500 | -78 | 4 | GCGCTTGATAATTATTCTC |
-72 | 4.6 | GATAATTATTCTCATTTAA | ||
Serratia proteamaculans 568 | Spro_3415 | -66 | 4.3 | GCACTTGATAATTATTATC |
-60 | 5.2 | GATAATTATTATCATTTAC | ||
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0843 | -63 | 4.5 | GCACTTGATAATCATTATC |
-57 | 5.2 | GATAATCATTATCATTTTT | ||
Edwardsiella tarda EIB202 | ETAE_1142 | -134 | 4.5 | GCAGTTGATAATCATTATC |
Position: -70
Score: 5.1 Sequence: GATATTGGTAATTATTATC
Position: -64
Score: 5.3 Sequence: GGTAATTATTATCATTCTC
Locus tag: SeD_A3071
|
||||
SeD_A3071 | -70 | 5.1 | GATATTGGTAATTATTATC | |
-64 | 5.3 | GGTAATTATTATCATTCTC | ||
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: iroB | ||||
Ortholog function: putative glycosyl transferase, related to UDP-glucuronosyltransferase | ||||
Salmonella typhimurium LT2 | STM2773 | -70 | 4.9 | GATATTGGTAATTATTATC |
-64 | 5.1 | GGTAATTATTATCATTCTC | ||
-58 | 4.5 | TATTATCATTCTCATTAAC | ||
Position: -110
Score: 5.5 Sequence: GATAATTATTATCATTAGC
Locus tag: SeD_A3075
|
||||
SeD_A3075 | -110 | 5.5 | GATAATTATTATCATTAGC | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: iroN | ||||
Ortholog function: TonB-dependent siderophore receptor | ||||
Salmonella typhimurium LT2 | STM2777 | -116 | 4.8 | TTGAATGATAATTATTATC |
-110 | 5.2 | GATAATTATTATCATTAGC | ||
Position: -99
Score: 4.7 Sequence: GCAAATAAGAATTATTTTC
Position: -93
Score: 4.5 Sequence: AAGAATTATTTTCATTTAT
Locus tag: SeD_A3171
|
||||
SeD_A3171 | -99 | 4.7 | GCAAATAAGAATTATTTTC | |
-93 | 4.5 | AAGAATTATTTTCATTTAT | ||
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: sitA | ||||
Ortholog function: iron ABC transporter, periplasmic substrate-binding protein | ||||
Salmonella typhimurium LT2 | STM2861 | -99 | 4.5 | GCAAATAAGAATTATTTTC |
-93 | 4.2 | AAGAATTATTTTCATTTAT | ||
Citrobacter koseri ATCC BAA-895 | CKO_04090 | -84 | 4.5 | GTAAATAAGAATTATTTTC |
-78 | 4.2 | AAGAATTATTTTCATTTAT | ||
Citrobacter koseri ATCC BAA-895 | CKO_00940 | -111 | 4.1 | GATAAAGATAATTTTTCTC |
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03078 | -99 | 4.5 | GCAAATAAGAATTATTTTC |
-93 | 4.2 | AAGAATTATTTTCATTTAT | ||
Enterobacter sp. 638 | Ent638_1111 | -98 | 4.9 | TTTAATGATAATTATTTTC |
-92 | 4.5 | GATAATTATTTTCATTTAA | ||
Yersinia pestis KIM | y1897 | -39 | 5.2 | GGTATTGATAATCATTTTC |
-33 | 4.7 | GATAATCATTTTCATTTGT | ||
Serratia proteamaculans 568 | Spro_2133 | -41 | 5.4 | GATATTGATAATCATTTTC |
-35 | 4.6 | GATAATCATTTTCATTTGA | ||
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2392 | -53 | 5.1 | GATATTGATAATTATTCTC |
Proteus mirabilis HI4320 | PMI1027 | -63 | 4.2 | TGAAATGATATTGATAATC |
-57 | 5.5 | GATATTGATAATCATTATC | ||
Photorhabdus luminescens subsp. laumondii TTO1 | plu2672 | -49 | 5.2 | GATATTGATAATCGTTATC |
-43 | 4.5 | GATAATCGTTATCATATAC | ||
Position: -68
Score: 4.1 Sequence: CTGATTAACAATCATTATC
Position: -62
Score: 4.5 Sequence: AACAATCATTATCATTTAA
Locus tag: SeD_A3570
|
||||
SeD_A3570 | -68 | 4.1 | CTGATTAACAATCATTATC | |
-62 | 4.5 | AACAATCATTATCATTTAA | ||
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: yqjH | ||||
Ortholog function: FAD-binding 9, siderophore-interacting domain protein | ||||
Escherichia coli str. K-12 substr. MG1655 | b3070 | -71 | 4.2 | ATGATTAACAATCATTATC |
-65 | 4.6 | AACAATCATTATCATTTGC | ||
Salmonella typhimurium LT2 | STM3214 | -62 | 4.3 | AACAATCATTATCATTTAA |
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03499 | -62 | 4.5 | GGCAATCATTATCATTTGC |
Enterobacter sp. 638 | Ent638_3524 | -61 | 4.1 | AGCAATCATTATCATTTAA |
Position: -55
Score: 4.8 Sequence: TGTAATCATAACCATTCTC
Position: -49
Score: 4.4 Sequence: CATAACCATTCTCATTTAC
Locus tag: SeD_A3811
|
||||
SeD_A3811 | -55 | 4.8 | TGTAATCATAACCATTCTC | |
-49 | 4.4 | CATAACCATTCTCATTTAC | ||
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: bfd | ||||
Ortholog function: bacterioferritin-associated ferredoxin | ||||
Escherichia coli str. K-12 substr. MG1655 | b3337 | -51 | 3.9 | tgaAATaAgAActATTtTC |
-45 | 3.9 | aAgAActATttTCATTtat | ||
Salmonella typhimurium LT2 | STM3444 | -55 | 4.6 | TGTAATCATAACCATTCTC |
-49 | 4.3 | CATAACCATTCTCATTTAC | ||
Citrobacter koseri ATCC BAA-895 | CKO_04744 | -55 | 4.3 | TGTAATCATAACTATTCTC |
-49 | 4.2 | CATAACTATTCTCATTTAC | ||
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03723 | -55 | 4.6 | TGTAATCATAACCATTCTC |
-49 | 3.9 | cATAAccATtcTCATTtaa | ||
Enterobacter sp. 638 | Ent638_3755 | -55 | 4.7 | TGTAATCATAATTATTCTC |
-49 | 4.2 | CATAATTATTCTCACTTAC | ||
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4034 | -132 | 3.9 | tgaAATaAaAATaATTcTt |
-126 | 4.4 | AAAAATAATTCTTATTTAC | ||
Proteus mirabilis HI4320 | PMI3252 | -57 | 4.2 | TGAAATAACAATGATTATC |
-51 | 4.8 | AACAATGATTATCATTTAC | ||
Photorhabdus luminescens subsp. laumondii TTO1 | plu4729 | -59 | 4.4 | TGAAATGAGACTCATTATT |
-53 | 3.6 | GAgAcTcATtATtATTtaa | ||
Position: -304
Score: 4.2 Sequence: ACTATTAATTATCACTTTA
Position: -133
Score: 4.6 Sequence: AGAAACCATTCTCATTATC
Locus tag: SeD_A3874
|
||||
SeD_A3874 | -304 | 4.2 | ACTATTAATTATCACTTTA | |
-133 | 4.6 | AGAAACCATTCTCATTATC | ||
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: feoA | ||||
Ortholog function: ferrous iron transport protein A | ||||
Escherichia coli str. K-12 substr. MG1655 | b3408 | -138 | 3.4 | GcTgATagaAAcCATTcTC |
-132 | 4.5 | AGAAACCATTCTCATTATC | ||
Salmonella typhimurium LT2 | STM3505 | -140 | 3.5 | GAagATagaAAcCATTcTC |
-133 | 4.5 | AGAAACCATTCTCATTATC | ||
Citrobacter koseri ATCC BAA-895 | CKO_04830 | -139 | 4.1 | GATGATAAAAACCATTCTC |
-133 | 4.7 | AAAAACCATTCTCATTATC | ||
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03778 | -133 | 4.1 | GATGATAAAAACCATTCTC |
-127 | 4.7 | AAAAACCATTCTCATTATC | ||
Enterobacter sp. 638 | Ent638_3821 | -62 | 4.5 | AGAAACCATTCTCATTATC |
Yersinia pestis KIM | y3912 | -118 | 4.1 | GAGCATGAAAATAATTCTC |
-112 | 4.4 | GAAAATAATTCTCAGTATT | ||
Serratia proteamaculans 568 | Spro_4628 | -155 | 4.3 | GAATACGATAATGATTCTC |
-149 | 4.9 | GATAATGATTCTCACTATT | ||
Edwardsiella tarda EIB202 | ETAE_3283 | -163 | 4.3 | GAAAACGATTATCAGTTTT |
-157 | 4.1 | GATTATCAGTTTTATTATA | ||
Proteus mirabilis HI4320 | PMI2920 | -138 | 4 | AAAGATGGTTATAATTCTC |
-132 | 4.3 | GGTTATAATTCTCATTTGC | ||
-59 | 4.8 | GTTAATAATTATCAGTATC | ||
-53 | 4.6 | AATTATCAGTATCATTATT | ||
Photorhabdus luminescens subsp. laumondii TTO1 | plu0209 | -244 | 4 | AATGTTGGTTATTATTCTC |
-238 | 4.2 | GGTTATTATTCTCATTTGC | ||
Position: -118
Score: 5 Sequence: GGCAATAATAATCATTCTC
Position: -112
Score: 4.9 Sequence: AATAATCATTCTCATTCGC
Locus tag: SeD_A3916
|
||||
SeD_A3916 | -118 | 5 | GGCAATAATAATCATTCTC | |
-112 | 4.9 | AATAATCATTCTCATTCGC | ||
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: yhhY | ||||
Ortholog function: GCN5-related N-acetyltransferase | ||||
Salmonella typhimurium LT2 | STM3546 | -119 | 4.7 | GGCAATAATAATCATTCTC |
-113 | 4.7 | AATAATCATTCTCATTCGC | ||
Position: -99
Score: 4.9 Sequence: GGCATTGATAATCATTTTC
Position: -93
Score: 5.2 Sequence: GATAATCATTTTCAATATC
Locus tag: SeD_A4453
|
||||
SeD_A4453 | -99 | 4.9 | GGCATTGATAATCATTTTC | |
-93 | 5.2 | GATAATCATTTTCAATATC | ||
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: sodA | ||||
Ortholog function: manganese/iron superoxide dismutase | ||||
Escherichia coli str. K-12 substr. MG1655 | b3908 | -99 | 4.7 | GGCATTGATAATCATTTTC |
-93 | 5 | GATAATCATTTTCAATATC | ||
Salmonella typhimurium LT2 | STM4055 | -99 | 4.7 | GGCATTGATAATCATTTTC |
-93 | 5 | GATAATCATTTTCAATATC | ||
Citrobacter koseri ATCC BAA-895 | CKO_03093 | -88 | 4.3 | GGCATTGATAAGCATTTTC |
-82 | 4.4 | GATAAGCATTTTCAATATC | ||
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04217 | -88 | 4.3 | GGCATTGATAAGCATTTTC |
-82 | 4 | GATAAGCATTTTCAATACC | ||
Enterobacter sp. 638 | Ent638_4063 | -100 | 4.7 | GGCATTGATAATCATTTTC |
-94 | 5 | GATAATCATTTTCAATATC | ||
Yersinia pestis KIM | y4080 | -104 | 4.4 | AGGTTTGATAATCATTTTC |
-98 | 5 | GATAATCATTTTCAATATC | ||
Serratia proteamaculans 568 | Spro_0081 | -105 | 4.7 | GGCATTGATAATCATTTTC |
-99 | 5 | GATAATCATTTTCAATATC | ||
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0092 | -105 | 4.9 | AATAATCATTTTCAATATC |
Proteus mirabilis HI4320 | PMI3036 | -95 | 4.6 | GGATATGATAATGATTTTC |
-89 | 5.2 | GATAATGATTTTCATTAAC | ||
Photorhabdus luminescens subsp. laumondii TTO1 | plu0075 | -102 | 4.3 | GGTATTGATAAGCATTTCC |
Position: -37
Score: 5.3 Sequence: GATATTGGTTATCATTATC
Locus tag: SeD_A4966
|
||||
SeD_A4966 | -37 | 5.3 | GATATTGGTTATCATTATC | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: yjjZ | ||||
Ortholog function: putative membrane protein | ||||
Escherichia coli str. K-12 substr. MG1655 | b4567 | -60 | 4.4 | GCAAATGATAAAAATTATC |
-37 | 5.2 | GATATTGGTTATCATTATC | ||
Salmonella typhimurium LT2 | STM4552 | -37 | 5.2 | GATATTGGTTATCATTATC |
-31 | 4.2 | GGTTATCATTATCAATTCC | ||
Citrobacter koseri ATCC BAA-895 | CKO_03427 | 2 | 4.9 | GCTATTGGTTATCATTATC |
8 | 4.1 | GGTTATCATTATCGGTATC | ||
Enterobacter sp. 638 | Ent638_0529 | -37 | 5.2 | GATATTGGTTATCATTATC |
-31 | 4 | GGTTATCATTATCATATTG | ||
Erwinia amylovora ATCC 49946 | EAM_0565 | -70 | 4.3 | CAAAGTGATAATGATTAAC |
-64 | 4.3 | GATAATGATTAACATATGC | ||
-47 | 4.9 | GCTATTGGTAATCATTATC | ||
-41 | 4.8 | GGTAATCATTATCATTTAT | ||
Yersinia pestis KIM | y3754 | -4 | 4.9 | GATATTGGTTATGATTATC |
2 | 5.2 | GGTTATGATTATCATTATC | ||
Serratia proteamaculans 568 | Spro_0646 | -39 | 4.7 | GATATTAGTTCTCATTATC |
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0738 | -89 | 5 | GATATTAGTTATCATTATC |
-83 | 4.5 | AGTTATCATTATCATTTTT | ||
Proteus mirabilis HI4320 | PMI2497 | -27 | 5.3 | AATAATGAAAATCATTATC |
-21 | 5.2 | GAAAATCATTATCATTAAC | ||
Photorhabdus luminescens subsp. laumondii TTO1 | plu4253 | -92 | 5.2 | GATATTGGTAATCATTATC |
-86 | 4.7 | GGTAATCATTATCATTTGT | ||