Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Fur regulog to Dickeya dadantii Ech586

Reference regulog properties
Source regulog: Fur - Enterobacteriales
Regulator type: Transcription factor
Regulator family: FUR
Regulation mode: repressor (activator)
Biological process: Iron homeostasis
Effector: Iron ion, (Fe2+)
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Dickeya dadantii Ech586
Orthologous TF(s) Dd586_1162
Regulated genes 20
Built upon 656 sites [see more]
Predicted regulatory interactions in Dickeya dadantii Ech586
Locus tag Position Score Sequence
Position: -88
Score: 4.4
Sequence: AATAATGAGAACGACTATC
Locus tag: Dd586_0340
Dd586_0340 -88 4.4 AATAATGAGAACGACTATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: exbB
Ortholog function: TonB-dependent siderophore transporter component ExbB
Escherichia coli str. K-12 substr. MG1655 b3006 -82 4.1 AGTAATGAGAACGACTATC
Salmonella typhimurium LT2 STM3159 -82 4.1 AGTAATGAGAACGACTATC
Citrobacter koseri ATCC BAA-895 CKO_04401 -97 4.1 AGTAATGAGAACGACTATC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03426 -97 4.3 ACTAATGAGAACCACTATC
Enterobacter sp. 638 Ent638_3417 -97 4.3 ACTAATGAGAACCACTATC
Yersinia pestis KIM y3495 -71 4.8 ACTAATGATAATTACTATC
Serratia proteamaculans 568 Spro_4211 -94 4.4 AATAATGAGAACTACTATC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0358 -206 4.3 AATAATGAGAACGACTATC
Proteus mirabilis HI4320 PMI0029 -170 4.8 AGTAATGATAATTACTATC
Photorhabdus luminescens subsp. laumondii TTO1 plu3941 -98 5.1 AATAATGATAATTACTATC
Position: -35
Score: 5.2
Sequence: GATATTAGTTATCATTATC
Locus tag: Dd586_0622
Dd586_0622 -35 5.2 GATATTAGTTATCATTATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: yjjZ
Ortholog function: putative membrane protein
Escherichia coli str. K-12 substr. MG1655 b4567 -60 4.4 GCAAATGATAAAAATTATC
-37 5.2 GATATTGGTTATCATTATC
Salmonella typhimurium LT2 STM4552 -37 5.2 GATATTGGTTATCATTATC
-31 4.2 GGTTATCATTATCAATTCC
Citrobacter koseri ATCC BAA-895 CKO_03427 2 4.9 GCTATTGGTTATCATTATC
8 4.1 GGTTATCATTATCGGTATC
Enterobacter sp. 638 Ent638_0529 -37 5.2 GATATTGGTTATCATTATC
-31 4 GGTTATCATTATCATATTG
Erwinia amylovora ATCC 49946 EAM_0565 -70 4.3 CAAAGTGATAATGATTAAC
-64 4.3 GATAATGATTAACATATGC
-47 4.9 GCTATTGGTAATCATTATC
-41 4.8 GGTAATCATTATCATTTAT
Yersinia pestis KIM y3754 -4 4.9 GATATTGGTTATGATTATC
2 5.2 GGTTATGATTATCATTATC
Serratia proteamaculans 568 Spro_0646 -39 4.7 GATATTAGTTCTCATTATC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0738 -89 5 GATATTAGTTATCATTATC
-83 4.5 AGTTATCATTATCATTTTT
Proteus mirabilis HI4320 PMI2497 -27 5.3 AATAATGAAAATCATTATC
-21 5.2 GAAAATCATTATCATTAAC
Photorhabdus luminescens subsp. laumondii TTO1 plu4253 -92 5.2 GATATTGGTAATCATTATC
-86 4.7 GGTAATCATTATCATTTGT
Position: -65
Score: 4.6
Sequence: GCACTTGATAATCATTATC
Position: -59
Score: 4.3
Sequence: GATAATCATTATCAACTTT
Locus tag: Dd586_0776
Dd586_0776 -65 4.6 GCACTTGATAATCATTATC
-59 4.3 GATAATCATTATCAACTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mntH
Ortholog function: Mn2+/Fe2+ transporter, NRAMP family
Escherichia coli str. K-12 substr. MG1655 b2392 -68 4.7 GAATTTGATAATCATTCTC
-62 4.2 GATAATCATTCTCGTTTGG
Salmonella typhimurium LT2 STM2408 -68 4.5 GCACTTGATAATCATTATC
-62 4.8 GATAATCATTATCAATAAA
Citrobacter koseri ATCC BAA-895 CKO_00404 -50 4.3 GCACTTGATAATCATTCTC
-44 4.5 GATAATCATTCTCAATAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02743 -68 4.3 GAACTTGATAATCATTCGC
-62 4.3 GATAATCATTCGCATTTTG
Enterobacter sp. 638 Ent638_2926 -67 4.8 GATCTTGATAATCATTCTC
-61 4.8 GATAATCATTCTCATTTTG
Yersinia pestis KIM y1500 -78 4 GCGCTTGATAATTATTCTC
-72 4.6 GATAATTATTCTCATTTAA
Serratia proteamaculans 568 Spro_3415 -66 4.3 GCACTTGATAATTATTATC
-60 5.2 GATAATTATTATCATTTAC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0843 -63 4.5 GCACTTGATAATCATTATC
-57 5.2 GATAATCATTATCATTTTT
Edwardsiella tarda EIB202 ETAE_1142 -134 4.5 GCAGTTGATAATCATTATC
Position: -143
Score: 5
Sequence: GATAATGAATATCATTTGT
Position: -125
Score: 5.1
Sequence: TAAAATAATTACCATTATC
Position: -112
Score: 4.3
Sequence: ATTATCAATAATTATTTAC
Locus tag: Dd586_0783
Dd586_0783 -143 5 GATAATGAATATCATTTGT
-125 5.1 TAAAATAATTACCATTATC
-112 4.3 ATTATCAATAATTATTTAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: ECA0877
Ortholog function: TonB-like protein
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0877 -269 4.4 TAAAACGATTATCATTTGT
-263 4.1 GATTATCATTTGTATTATT
Position: -56
Score: 4.2
Sequence: GCAAATAAAAATAATTCTT
Position: -50
Score: 4.9
Sequence: AAAAATAATTCTTATTATT
Position: -47
Score: 4.5
Sequence: AATAATTCTTATTATTTTT
Locus tag: Dd586_1100
Dd586_1100 -56 4.2 GCAAATAAAAATAATTCTT
-50 4.9 AAAAATAATTCTTATTATT
-47 4.5 AATAATTCTTATTATTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Spro_1015
Ortholog function: iron(III) ABC transporter, periplasmic protein
Yersinia pestis KIM y3342 -41 4.2 ACAAACGATTTTGATTATC
-35 4.6 GATTTTGATTATCATTCGC
Serratia proteamaculans 568 Spro_1015 -52 4.3 GCTAATGAGAGTGATTATC
Position: -86
Score: 4.6
Sequence: ATTAATAAGAACTATTATC
Position: -80
Score: 4.5
Sequence: AAGAACTATTATCATTCTT
Locus tag: Dd586_1311
Dd586_1311 -86 4.6 ATTAATAAGAACTATTATC
-80 4.5 AAGAACTATTATCATTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yijD
Ortholog function: iron permease FTR1
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01045 -76 5 TGTAATGATAATCACTATC
-70 4.2 GATAATCACTATCATAAAT
Enterobacter sp. 638 Ent638_1545 -76 4.9 CGTAATGATAATCACTATC
Erwinia amylovora ATCC 49946 EAM_2059 -80 4.6 GATAATGATAATCCCTATC
Yersinia pestis KIM y2452 -84 4.4 CAGAATGATAATCACAATC
-78 4.3 GATAATCACAATCGTTTTA
Serratia proteamaculans 568 Spro_2929 -109 4.8 CAGAATGATAATCACTATC
Position: -35
Score: 5
Sequence: GATAATGATTCTTATTTCC
Locus tag: Dd586_1654
Dd586_1654 -35 5 GATAATGATTCTTATTTCC
Supported by regulated orthologs from reference regulons
Ortholog gene name: EAM_1649
Ortholog function: hypothetical protein
Erwinia amylovora ATCC 49946 EAM_1649 -41 4.7 TAATATGATAATGATTATC
-35 5.5 GATAATGATTATCATTAGC
-29 4 GATTATCATTAGCATAACC
Serratia proteamaculans 568 Spro_2178 24 4.8 AAATATGATAATGATTATC
30 5 GATAATGATTATCATTCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1858 -43 4.7 TAATATGATAATGATTATC
-37 4.9 GATAATGATTATCATTTCA
Position: -347
Score: 4.5
Sequence: GGTATCGATTATCAATAAC
Locus tag: Dd586_2144
Dd586_2144 -347 4.5 GGTATCGATTATCAATAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhE
Ortholog function: iron-containing aldehyde-alcohol dehydrogenase
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02199 -332 4 TTTAATGCTAATCGTTTTT
-326 3.2 GCTAATCGTTTTTTTAATT
Yersinia pestis KIM y2023 -339 5 GATAATGACAATCATTCTC
-333 3.7 GAcAATcATtcTCAaaAaa
Serratia proteamaculans 568 Spro_2704 -330 3.9 GTTATCAAGAATGATTCTC
-324 4.2 AAGAATGATTCTCAAAAAC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2326 -368 4.5 CCTAATGATATTGATTATC
-362 5.2 GATATTGATTATCAATATC
Edwardsiella tarda EIB202 ETAE_1508 -317 4 aAagATGAgAtTCATTcTC
-311 4.3 GAgAtTcATtcTCATTAaa
Proteus mirabilis HI4320 PMI1486 -300 4.5 GTAATTAATTATCATTACC
-294 4 AATTATCATTACCATTTAA
Photorhabdus luminescens subsp. laumondii TTO1 plu2496 -191 3.9 ccaAtcaATAATaATTATC
-185 4.4 AATAATAATTATCACTGAC
Position: -191
Score: 5
Sequence: GGTAATGAAAATAATTATC
Position: -185
Score: 3.7
Sequence: GAAAATAATTATCAAAGCT
Position: -179
Score: 3.6
Sequence: AATTATCAAAGCTATTTTC
Position: -153
Score: 3.7
Sequence: GAGAATAATGAAAATTATT
Position: -150
Score: 5.1
Sequence: AATAATGAAAATTATTCTC
Position: -144
Score: 4.2
Sequence: GAAAATTATTCTCATAACT
Locus tag: Dd586_2179
Dd586_2179 -191 5 GGTAATGAAAATAATTATC
-185 3.7 GAAAATAATTATCAAAGCT
-179 3.6 AATTATCAAAGCTATTTTC
-153 3.7 GAGAATAATGAAAATTATT
-150 5.1 AATAATGAAAATTATTCTC
-144 4.2 GAAAATTATTCTCATAACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ftnA
Ortholog function: ferritin
Escherichia coli str. K-12 substr. MG1655 b1905 -127 3.4 GgTAATGcgttTtATTccC
-121 3 GcgttTtATtccCATTcgt
Salmonella typhimurium LT2 STM1935 -100 4 AATAATTAAATTTAATATT
Citrobacter koseri ATCC BAA-895 CKO_01042 -97 4.3 AATAATTAAATTTATTATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02402 -161 4 ATAAATTAAAAGCATTCTC
-155 3.8 TAAAAGCATTCTCATTTAT
Enterobacter sp. 638 Ent638_2486 -103 3.7 TATTTTAATAAATAATATC
-97 3.6 AATAAATAATATCTTTATT
Erwinia amylovora ATCC 49946 EAM_2940 -131 4.4 TGGAATGATTATCAATTAC
Yersinia pestis KIM y2524 -93 4.4 AATAATGTGAATGATTATC
-87 4.1 GTGAATGATTATCATGATG
Serratia proteamaculans 568 Spro_1942 -174 4.5 GAAAATAGTTATCATAATT
-168 4 AGTTATCATAATTATTTAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2473 -158 4.6 TTAAATGATAATGAATATC
-152 4.8 GATAATGAATATCAATAGC
Proteus mirabilis HI4320 PMI1007 -184 4.7 GTTAATGATAATCAATTCC
-178 4.1 GATAATCAATTCCATTAAT
Photorhabdus luminescens subsp. laumondii TTO1 plu2689 -147 4.4 TTAAATGAGATTCATTTTC
-141 4.4 GAGATTCATTTTCATTTTT
Position: -121
Score: 4.8
Sequence: ATTAATAAGAATCATTTTT
Locus tag: Dd586_2468
Dd586_2468 -121 4.8 ATTAATAAGAATCATTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sfuA
Ortholog function: iron(III) ABC transporter, periplasmic protein
Yersinia pestis KIM y1526 -108 4.8 AACAATGATAATCATTTTT
-102 4.7 GATAATCATTTTTATTACC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3137 -169 4.2 CGAAATAATAATAACTATC
-163 4.7 AATAATAACTATCATTATT
-157 4.4 AACTATCATTATTATTATC
Position: -220
Score: 4.3
Sequence: AATAATGCATATGATTATT
Position: -214
Score: 4.9
Sequence: GCATATGATTATTATTATC
Position: -208
Score: 5
Sequence: GATTATTATTATCATTAAT
Locus tag: Dd586_2809
Dd586_2809 -220 4.3 AATAATGCATATGATTATT
-214 4.9 GCATATGATTATTATTATC
-208 5 GATTATTATTATCATTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ybdA
Ortholog function: enterobactin exporter EntS, MFS family
Escherichia coli str. K-12 substr. MG1655 b0591 -98 4.8 GATAATGAAATTAATTATC
-92 4.9 GAAATTAATTATCGTTATC
Salmonella typhimurium LT2 STM0593 -98 4.9 GATAATGATAGTAATTATC
-92 4.8 GATAGTAATTATCGTTATC
Citrobacter koseri ATCC BAA-895 CKO_02570 -99 4.9 GATAATGATAGTAATTATC
-93 4.8 GATAGTAATTATCGTTATC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00609 -94 4.9 GATAATGATAGTAATTATC
-88 4.8 GATAGTAATTATCGTTATC
Enterobacter sp. 638 Ent638_1123 -94 4.9 GATAATGATAGTAATTATC
-88 4.8 GATAGTAATTATCGTTATC
Serratia proteamaculans 568 Spro_3423 -112 4.4 ATAAATGAGTTTTATTATC
-106 4.4 GAGTTTTATTATCATTATT
Position: -213
Score: 4.4
Sequence: AATATTGAGAAACATTTTC
Position: -207
Score: 4.2
Sequence: GAGAAACATTTTCATTTGC
Locus tag: Dd586_2816
Dd586_2816 -213 4.4 AATATTGAGAAACATTTTC
-207 4.2 GAGAAACATTTTCATTTGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: CKO_02589
Ortholog function: TonB-dependent siderophore receptor
Citrobacter koseri ATCC BAA-895 CKO_02589 -114 4.2 GCAAATGGTAATGATTTGC
-108 4.3 GGTAATGATTTGCAATAAC
Enterobacter sp. 638 Ent638_1079 -109 4.3 GGGAATGATTTGCAATATC
Proteus mirabilis HI4320 PMI0363 -103 4.9 TAGAATAATAATAATTATC
-97 5 AATAATAATTATCATTAGT
Position: -90
Score: 4.4
Sequence: TTATATGATAATAATTATT
Position: -87
Score: 4.3
Sequence: TATGATAATAATTATTAAA
Position: -84
Score: 4.7
Sequence: GATAATAATTATTAAACTC
Locus tag: Dd586_3074
Dd586_3074 -90 4.4 TTATATGATAATAATTATT
-87 4.3 TATGATAATAATTATTAAA
-84 4.7 GATAATAATTATTAAACTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: yiuA
Ortholog function: siderophore ABC transporter, substrate binding periplasmic protein
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00520 -54 4.1 GAGAATAATTCTCAGAATC
Enterobacter sp. 638 Ent638_0573 -131 4.4 TCAATTGATAAGCATTATC
Erwinia amylovora ATCC 49946 EAM_2096 -48 4.5 AAGAATGATAATATTTATC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3241 -77 4.2 ATATACGATAATAATTATC
-71 4.7 GATAATAATTATCAAACTC
Position: -44
Score: 5.5
Sequence: GATAATCAGTATCATTATC
Locus tag: Dd586_3077
Dd586_3077 -44 5.5 GATAATCAGTATCATTATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: EAM_2941
Ortholog function: Fe3+-hydroxamate ABC transporter, periplasmic component
Erwinia amylovora ATCC 49946 EAM_2941 -41 4.1 GAAACTGATAATAATAATC
-35 5.5 GATAATAATAATCATTTTC
-29 4.1 AATAATCATTTTCTTTTGC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3246 -51 5 AATAATGATAACTATTATC
Position: -113
Score: 4.9
Sequence: AATAATGGTTCTCATTAGC
Locus tag: Dd586_3551
Dd586_3551 -113 4.9 AATAATGGTTCTCATTAGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: CKO_00978
Ortholog function: FAD-binding 9 siderophore-interacting domain protein
Citrobacter koseri ATCC BAA-895 CKO_00978 -90 4.3 GATAAGGTTTCTCATTATC
Serratia proteamaculans 568 Spro_0924 -93 4.3 AATAATATTTATTGTTATC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0065 -106 4.3 AATGGTGATAATGATTATC
-100 4.9 GATAATGATTATCGTTAGT
Position: -62
Score: 4
Sequence: TGAAATAAAAACCATTCTT
Position: -56
Score: 4.3
Sequence: AAAAACCATTCTTATTTAC
Locus tag: Dd586_3739
Dd586_3739 -62 4 TGAAATAAAAACCATTCTT
-56 4.3 AAAAACCATTCTTATTTAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: bfd
Ortholog function: bacterioferritin-associated ferredoxin
Escherichia coli str. K-12 substr. MG1655 b3337 -51 3.9 tgaAATaAgAActATTtTC
-45 3.9 aAgAActATttTCATTtat
Salmonella typhimurium LT2 STM3444 -55 4.6 TGTAATCATAACCATTCTC
-49 4.3 CATAACCATTCTCATTTAC
Citrobacter koseri ATCC BAA-895 CKO_04744 -55 4.3 TGTAATCATAACTATTCTC
-49 4.2 CATAACTATTCTCATTTAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03723 -55 4.6 TGTAATCATAACCATTCTC
-49 3.9 cATAAccATtcTCATTtaa
Enterobacter sp. 638 Ent638_3755 -55 4.7 TGTAATCATAATTATTCTC
-49 4.2 CATAATTATTCTCACTTAC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4034 -132 3.9 tgaAATaAaAATaATTcTt
-126 4.4 AAAAATAATTCTTATTTAC
Proteus mirabilis HI4320 PMI3252 -57 4.2 TGAAATAACAATGATTATC
-51 4.8 AACAATGATTATCATTTAC
Photorhabdus luminescens subsp. laumondii TTO1 plu4729 -59 4.4 TGAAATGAGACTCATTATT
-53 3.6 GAgAcTcATtATtATTtaa
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