Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagated regulons of Dickeya dadantii Ech586

Type Regulator Effector Pathway Genes Sites
TF AcrR Rhodamine 6G; Ethidium bromide; Proflavin Multidrug resistance 2 2
TF AraC Arabinose Arabinose utilization 3 5
TF ArgR Arginine Arginine biosynthesis; Arginine degradation 10 26
TF BirA Biotin Biotin biosynthesis 2 2
TF Crp Cyclic 3',5'-AMP Carbon catabolism 163 345
TF CueR Copper ion, (Cu+) Copper resistance 3 3
TF DeoR Deoxyribonucleoside utilization 1 2
TF ExuR Galacturonate Galacturonate utilization 2 4
TF FabR Unsaturated acyl-ACP; Unsaturated acyl-CoA Fatty acid biosynthesis 3 3
TF FadR Palmitoyl-CoA; Oleoyl-CoA Fatty acid degradation 5 6
TF Fnr Oxygen Energy metabolism; Anaerobic metabolism 62 118
TF FruR Fructose-1-phosphate; Fructose-1,6-diphosphate Central carbohydrate metabolism 13 14
TF Fur Iron ion, (Fe2+) Iron homeostasis 20 68
TF GalR/GalS Galactose Galactose utilization 1 1
TF GcvA Glycine Glycine metabolism 2 3
TF GlpR Glycerol 3-phosphate Glycerol utilization 5 9
TF GntR Gluconate Gluconate utilization 1 2
TF HexR 2-keto-3-deoxy-6-phosphogluconate Central carbohydrate metabolism 3 4
TF HutC cis-Urocanic acid Histidine utilization 3 5
TF IclR Pyruvate; Glyoxylate Glyoxylate bypass 1 1
TF IlvY 2-Acetolactate Branched-chain amino acid biosynthesis 2 4
TF IscR Iron-sulfur cluster redox state Iron-sulfur cluster biogenesis 2 2
TF KdgR 2-keto-3-deoxygluconate Pectin and polygalacturonate utlization 23 29
TF LacI Allolactose Lactose utilization 1 1
TF LeuO Guanosine 3',5'-bis(diphosphate) 2 3
TF LexA DNA damage SOS response 14 17
TF LfaR Sugar utilization 2 2
TF LysR LL-2,6-Diaminopimelate Lysine biosynthesis 2 2
TF MetR Homocysteine Methionine biosynthesis 5 8
TF ModE Molybdate Molybdopterin biosynthesis; Molybdenum homeostasis 2 2
TF MprA 2,4-Dinitrophenol; Carbonyl cyanide m-chlorophenylhydrazone Multidrug resistance 3 3
TF NadR NAD NAD biosynthesis 3 4
TF NagC N-acetylglucosamine-6-phosphate N-acetylglucosamine utilization 3 5
TF NarP Nitrate; Nitrite Nitrate and nitrite respiration 11 16
TF NhaR Potassium ion Osmotic stress response 2 2
TF NorR Nitric oxide Nitrosative stress response 2 2
TF NrdR Deoxyribonucleotides Ribonucleotide reductases 2 6
TF NsrR Nitric oxide Nitrosative stress response 6 13
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 10 23
TF PdhR Pyruvate Pyruvate metabolism 2 3
TF PhnF Phosphonate utilization 1 1
TF PurR Hypoxanthine; Guanine Purine metabolism 20 27
TF QorR Energy metabolism 1 1
TF RhaR Rhamnose Rhamnose utilization 2 2
TF RhaS Rhamnose Rhamnose utilization 3 3
TF SdaR Glycerate Glucarate utilization; Galactarate utilization 3 3
TF TrpR Tryptophan Tryptophan biosynthesis 1 1
TF TyrR Tyrosine; Phenylalanine Aromatic amino acid metabolism 4 5
TF UxuR Glucuronate Glucuronate utilization 2 2
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 4 5