Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of LexA regulog to Salmonella enterica subsp. enterica serovar Typhi str. E98-2068

Reference regulog properties
Source regulog: LexA - Enterobacteriales
Regulator type: Transcription factor
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Salmonella enterica subsp. enterica serovar Typhi str. E98-2068
Orthologous TF(s) SentesTyp_010100024265
Regulated genes 16
Built upon 265 sites [see more]
Predicted regulatory interactions in Salmonella enterica subsp. enterica serovar Typhi str. E98-2068
Locus tag Position Score Sequence
Position: -71
Score: 4.8
Sequence: ATCTGGATAAACATCCAGTC
Locus tag: SentesTyp_010100000868
SentesTyp_010100000868 -71 4.8 ATCTGGATAAACATCCAGTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: ruvA
Ortholog function: Holliday junction helicase subunit A
Escherichia coli str. K-12 substr. MG1655 b1861 -69 5 CGCTGGATATCTATCCAGCA
Salmonella typhimurium LT2 STM1895 -71 4.8 ATCTGGATAAACATCCAGTC
Citrobacter koseri ATCC BAA-895 CKO_01099 -70 4.6 GGCTGGATATCTATCCAGCC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02376 -69 4.6 GGCTGGATATCTATCCAGCC
Enterobacter sp. 638 Ent638_2430 -69 4.6 GGCTGGATAAACATCCAGCC
Erwinia amylovora ATCC 49946 EAM_2004 -68 5 AGCTGGATATCTATCCAGCT
Yersinia pestis KIM y2253 -244 4.4 GGCTGGATATCCATCCAGCC
Serratia proteamaculans 568 Spro_2777 -91 4.6 GGCTGGATATTCATCCAGCC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2492 -84 4.9 TGCTGGATATTCATCCAGCC
Edwardsiella tarda EIB202 ETAE_1439 -74 4.6 GGCTGGATATTCATCCAGCC
Proteus mirabilis HI4320 PMI1115 -68 4.5 GGCTGGATATACGTCCAGCT
Photorhabdus luminescens subsp. laumondii TTO1 plu2111 -85 4.6 GGCTGGATATGCATCCAGCT
Position: -70
Score: 4.9
Sequence: TGCTGTTTTTATAAACAATG
Locus tag: SentesTyp_010100006142
SentesTyp_010100006142 -70 4.9 TGCTGTTTTTATAAACAATG
Supported by regulated orthologs from reference regulons
Ortholog gene name: mug
Ortholog function: DNA glycosylase, G/U mismatch specific
Escherichia coli str. K-12 substr. MG1655 b3068 -69 4.9 TGCTGTTTTTATAAACAATG
Salmonella typhimurium LT2 STM3212 -70 4.9 TGCTGTTTTTATAAACAATG
Citrobacter koseri ATCC BAA-895 CKO_04467 -70 4.7 TGCTGTTTTTATAAACAACG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03475 -69 4.9 TGCTGTTTTTATAAACAATG
Enterobacter sp. 638 Ent638_3474 -70 4.9 TGCTGTTTTTATAAACAATG
Position: -39
Score: 5.9
Sequence: TACTGTGTTTATATACAGTA
Locus tag: SentesTyp_010100006164
SentesTyp_010100006164 -39 5.9 TACTGTGTTTATATACAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dinI
Ortholog function: DNA damage-inducible protein
Salmonella typhimurium LT2 STM2621 -39 5.7 TACTGTGTTTATATACAGTG
Salmonella typhimurium LT2 STM1019 -39 5.7 TACTGTGTTTATATACAGTG
Citrobacter koseri ATCC BAA-895 CKO_01890 -25 6.1 TACTGTATAaAaATACAGTA
Enterobacter sp. 638 Ent638_2256 -38 5.5 CACTGTATAAATGTACAGTT
Position: -100
Score: 5.7
Sequence: TACTGTATATTCAAACAGGT
Locus tag: SentesTyp_010100011389
SentesTyp_010100011389 -100 5.7 TACTGTATATTCAAACAGGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: uvrA
Ortholog function: excinuclease ABC subunit A
Escherichia coli str. K-12 substr. MG1655 b4058 -103 5.5 TACTGTATATTCATTCAGGT
Salmonella typhimurium LT2 STM4254 -100 5.7 TACTGTATATTCAAACAGGT
Citrobacter koseri ATCC BAA-895 CKO_03843 -102 5.3 TACTGTATATCCATTCAGGT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04445 -105 5.5 TACTGTATATTCATTCAGGT
Enterobacter sp. 638 Ent638_0261 -100 5.7 TACTGTATATTCAAACAGGT
Erwinia amylovora ATCC 49946 EAM_0307 -101 4.5 CACTGGTTATCCATTCAGGC
Yersinia pestis KIM y0580 -318 4.8 CACTGGATATCCATTCAGGT
Serratia proteamaculans 568 Spro_4440 -140 5.2 TACTGGATATTCATTCAGGT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3689 -107 5.5 TACTGGATATTCATTCAGTT
Edwardsiella tarda EIB202 ETAE_3184 -92 5.3 TACTGGATATCCATTCAGTT
Proteus mirabilis HI4320 PMI2746 -84 5.3 TACTGTATATCCATTCAGCT
Photorhabdus luminescens subsp. laumondii TTO1 plu4350 -209 5.3 TACTGTATATCTAATCAGTC
Position: -41
Score: 6.2
Sequence: TACTGTATGAATATACAGTA
Locus tag: SentesTyp_010100011854
SentesTyp_010100011854 -41 6.2 TACTGTATGAATATACAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sulA
Ortholog function: Cell division inhibitor sulA
Escherichia coli str. K-12 substr. MG1655 b0958 -42 5.6 TACTGTACATCCATACAGTA
Salmonella typhimurium LT2 STM1071 -41 6.2 TACTGTATGAATATACAGTA
Citrobacter koseri ATCC BAA-895 CKO_02110 -41 6 TACTGTATATCCATACAGTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00987 -39 6 TACTGTATATGCATACAGTA
Enterobacter sp. 638 Ent638_1470 -34 6.2 TACTGTATATTCATACAGTA
Erwinia amylovora ATCC 49946 EAM_1378 -40 5.7 TACTGTATATCCATACAGTC
Yersinia pestis KIM y2734 -39 6.1 TACTGTATATACATACAGCA
Serratia proteamaculans 568 Spro_1755 -41 5.9 TACTGTATAAACATACAGTG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1752 -41 6.1 TACTGTATGTTCATACAGTA
Edwardsiella tarda EIB202 ETAE_1269 -115 5.9 TACTGTATAAGCATACAGTA
Proteus mirabilis HI4320 PMI0786 -39 6.3 TACTGTATATACATACAGTA
Photorhabdus luminescens subsp. laumondii TTO1 plu1776 -40 6 TACTGTATATTAATACAGTT
Position: -95
Score: 4.8
Sequence: TACTGATGTTATATACAGGT
Locus tag: SentesTyp_010100017209
SentesTyp_010100017209 -95 4.8 TACTGATGTTATATACAGGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yjiW
Ortholog function: LexA regulated, putative SOS response
Escherichia coli str. K-12 substr. MG1655 b4347 -95 5 TACTGATGATATATACAGGT
Salmonella typhimurium LT2 STM4523 -94 4.4 TACTGATGTTATGTACAGGT
Position: -93
Score: 5.6
Sequence: TACTGTTTTTTCATCCAGTA
Locus tag: SentesTyp_010100018499
SentesTyp_010100018499 -93 5.6 TACTGTTTTTTCATCCAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: uvrB
Ortholog function: Excinuclease ABC subunit B
Escherichia coli str. K-12 substr. MG1655 b0779 -94 5.6 AACTGTTTTTTTATCCAGTA
Salmonella typhimurium LT2 STM0798 -93 5.6 TACTGTTTTTTCATCCAGTA
Citrobacter koseri ATCC BAA-895 CKO_02348 -93 5.4 CACTGTTTTTTCATCCAGTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00804 -95 5.7 CACTGTTTAAATATCCAGTA
Enterobacter sp. 638 Ent638_1271 -95 5.4 CACTGGATTTACATCCAGTA
Erwinia amylovora ATCC 49946 EAM_1216 -96 4.7 AGCTGTGATTATATCCAGTG
Yersinia pestis KIM y3026 -97 5.3 AGCTGGTTTTATATCCAGTA
Serratia proteamaculans 568 Spro_1317 -130 5.3 AGCTGGTTTTATATCCAGTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2820 -232 5.6 TgCTGTtTtTATATcCAGTA
Edwardsiella tarda EIB202 ETAE_2547 -106 5.2 AGCTGGGTAAATATCCAGTA
Proteus mirabilis HI4320 PMI0607 -51 5.3 AGCTGGATTTTTATCCAGTA
Photorhabdus luminescens subsp. laumondii TTO1 plu1491 -56 5.3 AGCTGGTTTTATATCCAGTA
Position: -37
Score: 5.5
Sequence: TACTGTATATAAACACAGGT
Locus tag: SentesTyp_010100020090
SentesTyp_010100020090 -37 5.5 TACTGTATATAAACACAGGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yebG
Ortholog function: SOS regulon DNA damage-inducible protein
Escherichia coli str. K-12 substr. MG1655 b1848 -37 5.3 TACTGTATAAAATCACAGTT
Salmonella typhimurium LT2 STM1882 -37 5.5 TACTGTATATAAACACAGGT
Citrobacter koseri ATCC BAA-895 CKO_01118 -38 4.8 TGCTGTACATAATTACAGGT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02363 -35 5.9 TACTGTATAAAAATACAGTG
Enterobacter sp. 638 Ent638_1887 -33 5.3 CACTGTATATAATTACAGTG
Erwinia amylovora ATCC 49946 EAM_1993 -35 5.7 TACTGTATAAAAACACAGTT
Yersinia pestis KIM y2530 -47 5.2 CACTGTGATTATATACAGTT
Serratia proteamaculans 568 Spro_2803 -44 6.1 TACTGTATAAAAATACAGTA
Edwardsiella tarda EIB202 ETAE_1833 -31 5.8 TACTGTATATAAAAACAGTG
Position: -35
Score: 5.4
Sequence: TACTGTACACTTAAACAGTA
Locus tag: SentesTyp_010100020495
SentesTyp_010100020495 -35 5.4 TACTGTACACTTAAACAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dinB
Ortholog function: DNA polymerase IV (EC 2.7.7.7)
Escherichia coli str. K-12 substr. MG1655 b0231 -34 4.8 CACTGTATACTTTACCAGTG
Salmonella typhimurium LT2 STM0313 -35 5.4 TACTGTACACTTAAACAGTA
Citrobacter koseri ATCC BAA-895 CKO_02960 -35 5.8 TACTGTATACTTAAACAGTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00247 1 5.2 TGCTGTATGGGTATACAGTG
Enterobacter sp. 638 Ent638_0762 -37 5.8 TACTGTATACTTATCCAGTA
Erwinia amylovora ATCC 49946 EAM_0894 -36 5.4 GACTGTATACTTATCCAGTA
Yersinia pestis KIM y0959 -41 5.3 GACTGTATACTTATACAGCT
Serratia proteamaculans 568 Spro_0962 -35 5.7 GCCTGTATATTTATACAGTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3468 -36 5.5 ATCTGTATATTCATACAGTA
Edwardsiella tarda EIB202 ETAE_0788 -42 5.6 TGCTGTATACTCATACAGTA
Proteus mirabilis HI4320 PMI0362 -39 6.1 TACTGTATATTTAAACAGTA
Photorhabdus luminescens subsp. laumondii TTO1 plu1239 -42 4.8 TTATGTATGTTTATACAGTT
Position: -68
Score: 5.6
Sequence: TACTGTATAAAAAACCAGTT
Position: -46
Score: 5.3
Sequence: TACTGTATTTAATTACAGTC
Locus tag: SentesTyp_010100023570
SentesTyp_010100023570 -68 5.6 TACTGTATAAAAAACCAGTT
-46 5.3 TACTGTATTTAATTACAGTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: recN
Ortholog function: DNA repair protein RecN
Escherichia coli str. K-12 substr. MG1655 b2616 -68 5.7 TACTGTATATAAAACCAGTT
-46 4.9 TACTGTACACAATAACAGTA
-28 4.7 TAATGGTTTTTCATACAGGA
Salmonella typhimurium LT2 STM2684 -68 5.6 TACTGTATAAAAAACCAGTT
-46 5.3 TACTGTATTTAATTACAGTC
-28 4.5 TCATGGTTTTTCATACAGGA
Citrobacter koseri ATCC BAA-895 CKO_03938 -68 5.6 TACTGTATAAAAAACCAGTT
-46 5.1 TACTGTATGTAATCACAGTC
-28 4.5 TCATGGTTTTTCATACAGGA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02938 -68 5.2 TACTGGATAAAAAACCAGTC
-46 5.2 TACTGTACGAAAACACAGTA
-28 4.9 TATTGGTTTTTCATACAGGA
Enterobacter sp. 638 Ent638_3096 -68 5.6 TACTGTATAAAAAACCAGTT
-46 5.8 TACTGTATAGAAATACAGTT
Erwinia amylovora ATCC 49946 EAM_2529 -68 5.7 TACTGTTTATAAAACCAGTA
-46 4.3 TACTGTATGAAAAACCATAT
-28 4.8 ATCTGTGTTTTCATACAGGA
Yersinia pestis KIM y3075 39 5.5 TACTGTATATAAAACCAGTC
61 4.5 TACTGTGTTCAAATACAGAC
Serratia proteamaculans 568 Spro_3686 -68 5.5 TACTGTATATAAAACCAGTC
-46 5 TACTGTATGAAACCACAGTT
-28 4.5 TTATGTATTTATACACAGGA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0840 -61 5.7 TACTGTATATAAAACCAGTT
-39 5.4 TACTGTATGTAAACACAGTC
Edwardsiella tarda EIB202 ETAE_2737 -68 5.6 TACTGTATAAAAAACCAGTT
-46 4.6 TACTGGCATTAAACACAGTA
Proteus mirabilis HI4320 PMI1902 -66 5.6 TACTGTATAAAAAACCAGTT
-44 5.1 TACTGTATGTAATTACAGAT
Photorhabdus luminescens subsp. laumondii TTO1 plu3374 -68 5.6 TACTGTATAAAAAACCAGTT
-46 4.8 TACTGTATGAAGATACAGAG
-28 4.5 AGGTGTTTTTATACACAGGA
Position: -47
Score: 5.2
Sequence: AACTGTATATACTCACAGCA
Position: -26
Score: 4.9
Sequence: GACTGTATATACACCCAGGG
Locus tag: SentesTyp_010100024265
SentesTyp_010100024265 -47 5.2 AACTGTATATACTCACAGCA
-26 4.9 GACTGTATATACACCCAGGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: lexA
Ortholog function: SOS-response repressor and protease LexA (EC 3.4.21.88)
Escherichia coli str. K-12 substr. MG1655 b4043 -47 5.1 TGCTGTATATACTCACAGCA
-26 5.2 AACTGTATATACACCCAGGG
Salmonella typhimurium LT2 STM4237 -47 5.2 AACTGTATATACTCACAGCA
-26 4.4 GATTGTATATACACCCAGGG
Citrobacter koseri ATCC BAA-895 CKO_03872 -47 5 AGCTGTATATACTCACAGCA
-26 5.2 AACTGTATATACACCCAGGG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04431 -47 5 AGCTGTATATACTCACAGCA
-26 5.2 AACTGTATATACACCCAGGG
Enterobacter sp. 638 Ent638_0247 -47 5 GACTGTATATACTCACAGCA
-26 5.2 AACTGTATATACACCCAGGG
Erwinia amylovora ATCC 49946 EAM_0264 -46 4.9 ACCTGTATATACTCACAGTC
-26 5 GACTGTATAAACAACCAGGG
Yersinia pestis KIM y0572 -47 5 AGCTGTATATACTCACAGCA
-26 5.4 AACTGTATAAACAAACAGGG
Serratia proteamaculans 568 Spro_4460 -47 5 ACCTGTATATACTCACAGCA
-26 5.2 GACTGTATAAACAAACAGGG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0630 -47 5 ACCTGTATATACTCACAGCA
-26 5 GACTGTATAAACAACCAGGG
Edwardsiella tarda EIB202 ETAE_0230 -47 5 ACCTGTATATACTCACAGCA
-26 5 AACTGTATAAACGAACAGGG
Proteus mirabilis HI4320 PMI2749 -47 4.9 ACCTGTATATACTCACAGTC
-26 5.2 GACTGTATAAACAAACAGGG
Photorhabdus luminescens subsp. laumondii TTO1 plu4374 -26 5.2 GACTGTATAAACAAACAGGG
Position: -41
Score: 5.7
Sequence: TACTGTACATTAATACAGTA
Locus tag: SentesTyp_010100029647
SentesTyp_010100029647 -41 5.7 TACTGTACATTAATACAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sbmC
Ortholog function: DNA gyrase inhibitor
Escherichia coli str. K-12 substr. MG1655 b2009 -34 6.1 TACTGTATATAAAAACAGTA
Salmonella typhimurium LT2 STM2061 -41 5.5 TACTGTACATTCATACAGCA
Citrobacter koseri ATCC BAA-895 CKO_00775 -157 5.7 TGCTGTGTTTATATACAGTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02467 -42 5.8 AGCTGTATATTCATACAGTA
Enterobacter sp. 638 Ent638_2577 -35 5.3 TAGTGTATAAATACACAGTA
Position: -33
Score: 5.5
Sequence: TACTGGATGAATAACCAGTT
Locus tag: SentesTyp_010100032741
SentesTyp_010100032741 -33 5.5 TACTGGATGAATAACCAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cho
Ortholog function: endonuclease of nucleotide excision repair
Escherichia coli str. K-12 substr. MG1655 b1741 -33 5.1 CACTGGATAGATAACCAGCA
Salmonella typhimurium LT2 STM1309 -6 5.5 TACTGGATGAATAACCAGTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01227 -32 5.3 TACTGGATGGATAGACAGTA
Position: -22
Score: 5.2
Sequence: TACTGTATGAATTGACAGTT
Locus tag: SentesTyp_010100032761
SentesTyp_010100032761 -22 5.2 TACTGTATGAATTGACAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ydjM
Ortholog function: membrane-bound metal-dependent hydrolase
Escherichia coli str. K-12 substr. MG1655 b1728 -52 4.4 CACTGTATAAAAATCCTATA
-34 4.7 TACTGTACGTATCGACAGTT
Salmonella typhimurium LT2 STM1321 -52 4.4 TACTGTATAAAAACCCTATA
-34 5.2 TACTGTATGAATTGACAGTT
Citrobacter koseri ATCC BAA-895 CKO_01754 -52 4.4 TACTGTATAAAAACCCTATA
-34 5.2 TACTGTATGAATTGACAGTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01239 -34 5 TACTGTATGAATCGACAGTT
Enterobacter sp. 638 Ent638_1715 -34 5.2 TACTGTATGAATTGACAGTT
Erwinia amylovora ATCC 49946 EAM_1619 -56 4.3 TACTGTATATATTCCCTATA
-38 4.8 TACTGGATGCATTGACAGTT
Yersinia pestis KIM y1879 -39 5 TACTGGATAAATCAACAGCT
Serratia proteamaculans 568 Spro_2124 -39 5.4 TACTGGATAAATTAACAGTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2409 -36 5.4 TACTGTATAAAATAACAGTT
Edwardsiella tarda EIB202 ETAE_1569 -109 5.5 TTCTGTATATTTATACAGCA
Proteus mirabilis HI4320 PMI1020 -54 5.2 CACTGTATAAATGAACAGCA
Photorhabdus luminescens subsp. laumondii TTO1 plu2679 -37 5 GACTGTATGGATAGACAGTT
Position: -35
Score: 6.1
Sequence: TACTGTATATAAAAACAGTA
Locus tag: SentesTyp_010100037822
SentesTyp_010100037822 -35 6.1 TACTGTATATAAAAACAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: umuD
Ortholog function: DNA polymerase V, subunit UmuD
Escherichia coli str. K-12 substr. MG1655 b1183 -39 6.1 TACTGTATATAAAAACAGTA
Salmonella typhimurium LT2 STM1998 -35 6.1 TACTGTATATAAAAACAGTA
Citrobacter koseri ATCC BAA-895 CKO_01842 -38 5.9 TACTGTATATATAATCAGTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01438 -40 5.8 TACTGTATATAAAAACAGTG
Enterobacter sp. 638 Ent638_2213 -34 5.9 TACTGTATGTAAAAACAGTA
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