Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of NarP regulog to Salmonella enterica subsp. enterica serovar Typhi str. J185

Reference regulog properties
Source regulog: NarP - Enterobacteriales
Regulator type: Transcription factor
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrate; Nitrite
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Salmonella enterica subsp. enterica serovar Typhi str. J185
Orthologous TF(s) SentesTy_010100022474
Regulated genes 20
Built upon 125 sites [see more]
Predicted regulatory interactions in Salmonella enterica subsp. enterica serovar Typhi str. J185
Locus tag Position Score Sequence
Position: -22
Score: 4.2
Sequence: TACTTTTCAAGGAGTA
Locus tag: SentesTy_010100001144
SentesTy_010100001144 -22 4.2 TACTTTTCAAGGAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: talA
Ortholog function: Transaldolase (EC 2.2.1.2)
Escherichia coli str. K-12 substr. MG1655 b2464 -22 4.2 TACTTTTCAAGGAGTA
Salmonella typhimurium LT2 STM2473 -22 4.2 TACTTTTCAAGGAGTA
Citrobacter koseri ATCC BAA-895 CKO_00330 -22 4.2 TACTTTTCAAGGAGTA
Position: -99
Score: 3.7
Sequence: TAACCAATAAATGGTA
Locus tag: SentesTy_010100001219
SentesTy_010100001219 -99 3.7 TAACCAATAAATGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yeaR
Ortholog function: Conserved hypothetical protein
Salmonella typhimurium LT2 STM1271 -99 3.7 TAACCAATAAATGGTA
Position: -132
Score: 4.8
Sequence: TACCTCTATCGGGGTA
Locus tag: SentesTy_010100003768
SentesTy_010100003768 -132 4.8 TACCTCTATCGGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: napF
Ortholog function: Periplasmic nitrate reductase, ferredoxin-type protein NapF
Escherichia coli str. K-12 substr. MG1655 b2208 -129 4.6 TACCCCGATCGGGGTA
Salmonella typhimurium LT2 STM2261 -132 4.8 TACCTCTATCGGGGTA
Yersinia pestis KIM y1442 -158 4.3 TACTCATTATTCGGTA
Serratia proteamaculans 568 Spro_3488 -322 4.7 TACCCCTTTAGGGGGA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1898 -111 4.4 TACCTCTAAAGGGTGA
Edwardsiella tarda EIB202 ETAE_1114 -156 3.9 TAACCCAAAAGAGGAA
Position: -91
Score: 4.2
Sequence: TAATCGTTAATGGGTA
Locus tag: SentesTy_010100006781
SentesTy_010100006781 -91 4.2 TAATCGTTAATGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: modA
Ortholog function: Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
Escherichia coli str. K-12 substr. MG1655 b0763 -90 3.9 TACCTCACAAAGGTTA
Salmonella typhimurium LT2 STM0781 -91 4.2 TAATCGTTAATGGGTA
Citrobacter koseri ATCC BAA-895 CKO_02372 -90 4 TAACCTCAATTGGGTA
Position: -105
Score: 4.3
Sequence: TACCTGATAGTGGGTA
Locus tag: SentesTy_010100008030
SentesTy_010100008030 -105 4.3 TACCTGATAGTGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yfbV
Ortholog function: Predicted membrane protein
Escherichia coli str. K-12 substr. MG1655 b2295 -104 4.3 TACCTGATAGTGGGTA
Salmonella typhimurium LT2 STM2336 -104 4.3 TACCTGATAGTGGGTA
Citrobacter koseri ATCC BAA-895 CKO_00500 -105 4.3 TACCTGATAGTGGGTA
Position: -177
Score: 4.5
Sequence: TAACTCTAAAGTGGTA
Locus tag: SentesTy_010100008840
SentesTy_010100008840 -177 4.5 TAACTCTAAAGTGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrfA
Ortholog function: Nitrite reductase, cytochrome c(552)
Escherichia coli str. K-12 substr. MG1655 b4070 -175 4.5 TAACTCTAAAGTGGTA
Salmonella typhimurium LT2 STM4277 -177 4.5 TAACTCTAAAGTGGTA
Citrobacter koseri ATCC BAA-895 CKO_03814 -180 4.5 TAACTCTAAAGTGGTA
Position: -100
Score: 4.7
Sequence: TACCCATAAAGGAGCA
Locus tag: SentesTy_010100008940
SentesTy_010100008940 -100 4.7 TACCCATAAAGGAGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: frdA
Ortholog function: Fumarate reductase subunit A (EC 1.3.5.4)
Escherichia coli str. K-12 substr. MG1655 b4154 -101 4.7 TACCTATAAAGGAGCA
Salmonella typhimurium LT2 STM4343 -100 4.7 TACCCATAAAGGAGCA
Citrobacter koseri ATCC BAA-895 CKO_03678 -60 4.7 TACCTATAAAGGAGCA
Position: -48
Score: 4.3
Sequence: TTCCCATAATTGGGTA
Locus tag: SentesTy_010100017288
SentesTy_010100017288 -48 4.3 TTCCCATAATTGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: arcB
Ortholog function: Aerobic respiration control sensor protein arcB (EC 2.7.3.-)
Escherichia coli str. K-12 substr. MG1655 b3210 -112 4.6 TACCTCCAACGGAGTA
Salmonella typhimurium LT2 STM3328 -48 4.3 TTCCCATAATTGGGTA
Citrobacter koseri ATCC BAA-895 CKO_04614 -49 3.8 TGCTCAGAATTGAGTA
Position: -30
Score: 4.5
Sequence: TACCTCGAAGTGAGCA
Locus tag: SentesTy_010100022846
SentesTy_010100022846 -30 4.5 TACCTCGAAGTGAGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: atpI
Ortholog function: ATP synthase maturation
Escherichia coli str. K-12 substr. MG1655 b3739 -31 4.6 TACCTCGAAGGGAGCA
Salmonella typhimurium LT2 STM3872 -30 4.5 TACCTCGAAGTGAGCA
Citrobacter koseri ATCC BAA-895 CKO_00079 -30 4.6 TACCTCGAAGGGAGCA
Serratia proteamaculans 568 Spro_0001 -33 4.6 TACCTCCTCAGGGGTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4519 -33 4.3 TACCTCTGAAAAGGTA
Edwardsiella tarda EIB202 ETAE_3526 -156 4.4 TACCTCCTGGGGGGTA
Position: -204
Score: 4.3
Sequence: TACCTCCTGGTGGGTA
Locus tag: SentesTy_010100023903
SentesTy_010100023903 -204 4.3 TACCTCCTGGTGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pdhR
Ortholog function: Pyruvate utilization transcriptional regulator PdhR, GntR family
Salmonella typhimurium LT2 STM0151 -204 4.3 TACCTCCTGGTGGGTA
Citrobacter koseri ATCC BAA-895 CKO_03260 -204 4.2 TACTCCCAGGGGAGTA
Serratia proteamaculans 568 Spro_4012 -198 4.2 TACCTCGTAAATGGTA
Position: -78
Score: 3.9
Sequence: CACCCCGAAAGAGTTA
Locus tag: SentesTy_010100025364
SentesTy_010100025364 -78 3.9 CACCCCGAAAGAGTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dnrN
Ortholog function: Nitric oxide-dependent regulator DnrN
Escherichia coli str. K-12 substr. MG1655 b4209 -79 3.7 TGCTACGTAAGGGTTA
Salmonella typhimurium LT2 STM4399 -78 3.9 CACCCCGAAAGAGTTA
Citrobacter koseri ATCC BAA-895 CKO_03623 -78 3.9 TGACCCGAAAGGGTTA
Yersinia pestis KIM y0652 -108 4.4 TACCCACTTGGAGTTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3606 -81 4.8 TACCTCGTAAGCGGTA
Position: -55
Score: 4.7
Sequence: TACTTCATTGTGGGTA
Locus tag: SentesTy_010100026261
SentesTy_010100026261 -55 4.7 TACTTCATTGTGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompW
Ortholog function: Outer membrane protein W precursor
Escherichia coli str. K-12 substr. MG1655 b1256 -55 4.5 TACTCCAATGTAGGTA
Salmonella typhimurium LT2 STM1732 -55 4.7 TACTTCATTGTGGGTA
Citrobacter koseri ATCC BAA-895 CKO_01333 -55 4.5 TACTCCATTGTAGGTA
Yersinia pestis KIM y2044 -43 4.7 TACTCATTTGTAGGTA
Serratia proteamaculans 568 Spro_2674 -28 4.5 TACCCGTAAGTAGGTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2303 -56 4.9 TACCTACTTAGGGGTA
Edwardsiella tarda EIB202 ETAE_1528 -52 3.7 TCACTCAATATGGTTA
Proteus mirabilis HI4320 PMI1350 -59 4.9 TACTTATTAATGGGTA
Photorhabdus luminescens subsp. laumondii TTO1 plu2478 -55 3.8 TTCTAATATATGAGTA
Position: -216
Score: 4.6
Sequence: TACTCAGAAGTGAGTA
Locus tag: SentesTy_010100026356
SentesTy_010100026356 -216 4.6 TACTCAGAAGTGAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhE
Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
Escherichia coli str. K-12 substr. MG1655 b1241 -215 4.7 TACCCAGAAGTGAGTA
Salmonella typhimurium LT2 STM1749 -216 4.6 TACTCAGAAGTGAGTA
Citrobacter koseri ATCC BAA-895 CKO_01318 -216 4.6 TACTCAGAAGTGAGTA
Yersinia pestis KIM y2023 -260 4 TACCTAAGAATAGTTA
Serratia proteamaculans 568 Spro_2704 -252 4 TACCCAAGAGTAGTTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2326 -289 4 CACCCACAAATAGGTA
Edwardsiella tarda EIB202 ETAE_1508 -239 4.4 TACCCAAGAATGAGTA
Position: -131
Score: 4.4
Sequence: TACCCATTATGAGTTA
Locus tag: SentesTy_010100026426
SentesTy_010100026426 -131 4.4 TACCCATTATGAGTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: caiT
Ortholog function: L-carnitine/gamma-butyrobetaine antiporter
Salmonella typhimurium LT2 STM0074 -131 4.1 TACCCATCATGAGTTA
Position: -98
Score: 5
Sequence: TACTCCCAAAGGGGTA
Locus tag: SentesTy_010100027500
SentesTy_010100027500 -98 5 TACTCCCAAAGGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ynfE
Ortholog function: Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-)
Escherichia coli str. K-12 substr. MG1655 b1587 -92 4.7 TAACCCAAAATGGGTA
Salmonella typhimurium LT2 STM1499 -95 5 TACTCCCAAAGGGGTA
Citrobacter koseri ATCC BAA-895 CKO_01581 -93 4.8 TACCTATAAGGGGTTA
-20 3.8 TAACTATAATGGAGTG
Serratia proteamaculans 568 Spro_1687 -143 4.3 TACCCACTTCTGAGTA
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